Ss1.1-Pig4-TMW8033C04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGCGTTTGGATGGTGCCTGGTGGTTCCTGCGACGACGAGGGGTGGTGTCTGACCACTG CTACCCATTCTCTGGCCATGAGCGGAATGAGGCTGGCCCTGCACCCCGCTGCATGATGCA CAGTCGAGCCATGGGTCGGGGCAAGCGCCAGGCTACTGCCCGCTGCCCTAATAGCTATGT CCACGCCAATGACATCTACCAGGTCACTCCTGCCTACCGCCTTGGCTCCAATGAGAAGGA TATCATGAAGGAGCTGATGGAGAATGGCCCCGTTCAAGCCCTCATGGAGGTGCACGAGGA CTTCTTCCTGTACCAGAGCGGCATCTACAGCCACACACCCGTGAGCCACGGGAGGCCGGA GAGATACCGCAGGCATGGGACCCACTCGGTCAAGATCACAGGGTGGGGCGAAGAGACGCT GCCAGATGGAAGGATGCTCAAATACTGGACGGCGGCCAACTCCTGGGGCCCAGGCTGGGG CGAGAGGGGCCACTTCCGCATCGTGCGCGGTGCCAACGAGTGCGACATCGAGAGCTTCGT GCTGGGCGTCTGGGGCCGCGTGGGAATGGAGGACATGGGTCACCCCTGAGGCCGCGGGCA CCACGCTGGGAAGAGCCCCCTGTGGGGCGGCAGCCTCCGCCCCCCCGCCCGCTTGCCCGA CGGAGCTCTGGCGCCAGGGGTCTAATCCCCGCAGGTTCGCTGACACAGCGCCCTGCCTGG GAGCCGCGGGCAGGCAAGGCTGGTGGAGCCCCCAGACCTCCCAGCCGGGACAGAGCAGGG CCTGGCAGGGGTAGAGCAAGACCCCCACGCAAGACCACTGAAGCCAGGACACCCCCAAGT CTCGGGCCCCACCACCCCACCCTTGTACTCTTATTCTTCAAAGGTATTTATTTTTCTTTT CACTATTTTAAAATAAAAGCAAAGTATTGATAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGCGTTTGGATGGTGCCTGGTGGTTCCTGCGACGACGAGGGGTGGTGTCTGACCACTG CTACCCATTCTCTGGCCATGAGCGGAATGAGGCTGGCCCTGCACCCCGCTGCATGATGCA CAGTCGAGCCATGGGTCGGGGCAAGCGCCAGGCTACTGCCCGCTGCCCTAATAGCTATGT CCACGCCAATGACATCTACCAGGTCACTCCTGCCTACCGCCTTGGCTCCAATGAGAAGGA TATCATGAAGGAGCTGATGGAGAATGGCCCCGTTCAAGCCCTCATGGAGGTGCACGAGGA CTTCTTCCTGTACCAGAGCGGCATCTACAGCCACACACCCGTGAGCCACGGGAGGCCGGA GAGATACCGCAGGCATGGGACCCACTCGGTCAAGATCACAGGGTGGGGCGAAGAGACGCT GCCAGATGGAAGGATGCTCAAATACTGGACGGCGGCCAACTCCTGGGGCCCAGGCTGGGG CGAGAGGGGCCACTTCCGCATCGTGCGCGGTGCCAACGAGTGCGACATCGAGAGCTTCGT GCTGGGCGTCTGGGGCCGCGTGGGAATGGAGGACATGGGTCACCCCTGAGGCCGCGGGCA CCACGCTGGGAAGAGCCCCCTGTGGGGCGGCAGCCTCCGCCCCCCCGCCCGCTTGCCCGA CGGAGCTCTGGCGCCAGGGGTCTAATCCCCGCAGGTTCGCTGACACAGCGCCCTGCCTGG GAGCCGCGGGCAGGCAAGGCTGGTGGAGCCCCCAGACCTCCCAGCCGGGACAGAGCAGGG CCTGGCAGGGGTAGAGCAAGACCCCCACGCAAGACCACTGAAGCCAGGACACCCCCAAGT CTCGGGCCCCACCACCCCACCCTTGTACTCTTATTCTTCAAAGGTATTTATTTTTCTTTT CACTATTTTAAAATAAAAGCAAAGTATTGATAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 277-395, - strand, RNAz p=0.622637 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 277-395, - strand, RNAz p=0.622637 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 42-231, gnl|bosTau2|chr2 (75660200-75660389) | |
| 42-231, gnl|canFam2|chr2 (72415513-72415360) | |
| 42-231, gnl|danRer3|chr19 (58033529-58033682) | |
| 42-231, gnl|dasNov1|scaffold_39453 (39649-39492) | |
| 42-231, gnl|echTel1|scaffold_278334 (4249-4093) | |
| 42-231, gnl|fr1|chrUn (115678192-115678054) | |
| 42-231, gnl|galGal2|chrUn (135861496-135861356) | |
| 42-231, gnl|hg17|chr1 (31719816-31719972) | |
| 42-231, gnl|Hg17|chr1 (31719844-31720033) | |
| 42-231, gnl|loxAfr1|scaffold_15833 (39627-39471) | |
| 42-231, gnl|mm7|chr4 (129612264-129612116) | |
| 42-231, gnl|Mm7|chr4 (129612242-129612053) | |
| 42-231, gnl|monDom2|scaffold_43 (8313919-8313761) | |
| 42-231, gnl|panTro1|chr1 (32447061-32447217) | |
| 42-231, gnl|rheMac2|chr1 (34337030-34337186) | |
| 42-231, gnl|rn3|chr5 (149210384-149210233) | |
| 42-231, gnl|tetNig1|chr21 (1438040-1438177) | |
| 42-231, gnl|xenTro1|scaffold_399 (680684-680829) | |
| 277-404, gnl|bosTau2|chr2 (75660815-75660942) | |
| 277-404, gnl|canFam2|chr2 (72414886-72414730) | |
| 277-404, gnl|danRer3|chr19 (58039051-58039182) | |
| 277-404, gnl|echTel1|scaffold_278334 (3499-3342) | |
| 277-404, gnl|fr1|chrUn (115676493-115676345) | |
| 277-404, gnl|hg17|chr1 (31720432-31720588) | |
| 277-404, gnl|Hg17|chr1 (31720445-31720572) | |
| 277-404, gnl|loxAfr1|scaffold_15833 (39015-38858) | |
| 277-404, gnl|mm7|chr4 (129611689-129611529) | |
| 277-404, gnl|Mm7|chr4 (129611674-129611547) | |
| 277-404, gnl|monDom2|scaffold_43 (8313157-8313000) | |
| 277-404, gnl|oryCun1|scaffold_198690 (139-295) | |
| 277-404, gnl|panTro1|chr1 (32447677-32447833) | |
| 277-404, gnl|rheMac2|chr1 (34337602-34337758) | |
| 277-404, gnl|rn3|chr5 (149209837-149209681) | |
| 277-404, gnl|tetNig1|chr21 (1439744-1439891) | |
| 277-404, gnl|xenTro1|scaffold_399 (683120-683252) | |
| 448-933, gnl|bosTau2|chr2 (75661999-75662506) | |
| 448-933, gnl|Hg17|chr1 (31721532-31722380) | |
| 448-933, gnl|Mm7|chr4 (129610853-129610251) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-231, gnl|bosTau2|chr2 (75660200-75660389) | |
| 42-231, gnl|canFam2|chr2 (72415513-72415360) | |
| 42-231, gnl|danRer3|chr19 (58033529-58033682) | |
| 42-231, gnl|dasNov1|scaffold_39453 (39649-39492) | |
| 42-231, gnl|echTel1|scaffold_278334 (4249-4093) | |
| 42-231, gnl|fr1|chrUn (115678192-115678054) | |
| 42-231, gnl|galGal2|chrUn (135861496-135861356) | |
| 42-231, gnl|hg17|chr1 (31719816-31719972) | |
| 42-231, gnl|Hg17|chr1 (31719844-31720033) | |
| 42-231, gnl|loxAfr1|scaffold_15833 (39627-39471) | |
| 42-231, gnl|mm7|chr4 (129612264-129612116) | |
| 42-231, gnl|Mm7|chr4 (129612242-129612053) | |
| 42-231, gnl|monDom2|scaffold_43 (8313919-8313761) | |
| 42-231, gnl|panTro1|chr1 (32447061-32447217) | |
| 42-231, gnl|rheMac2|chr1 (34337030-34337186) | |
| 42-231, gnl|rn3|chr5 (149210384-149210233) | |
| 42-231, gnl|tetNig1|chr21 (1438040-1438177) | |
| 42-231, gnl|xenTro1|scaffold_399 (680684-680829) | |
| 277-404, gnl|bosTau2|chr2 (75660815-75660942) | |
| 277-404, gnl|canFam2|chr2 (72414886-72414730) | |
| 277-404, gnl|danRer3|chr19 (58039051-58039182) | |
| 277-404, gnl|echTel1|scaffold_278334 (3499-3342) | |
| 277-404, gnl|fr1|chrUn (115676493-115676345) | |
| 277-404, gnl|hg17|chr1 (31720432-31720588) | |
| 277-404, gnl|Hg17|chr1 (31720445-31720572) | |
| 277-404, gnl|loxAfr1|scaffold_15833 (39015-38858) | |
| 277-404, gnl|mm7|chr4 (129611689-129611529) | |
| 277-404, gnl|Mm7|chr4 (129611674-129611547) | |
| 277-404, gnl|monDom2|scaffold_43 (8313157-8313000) | |
| 277-404, gnl|oryCun1|scaffold_198690 (139-295) | |
| 277-404, gnl|panTro1|chr1 (32447677-32447833) | |
| 277-404, gnl|rheMac2|chr1 (34337602-34337758) | |
| 277-404, gnl|rn3|chr5 (149209837-149209681) | |
| 277-404, gnl|tetNig1|chr21 (1439744-1439891) | |
| 277-404, gnl|xenTro1|scaffold_399 (683120-683252) | |
| 448-933, gnl|bosTau2|chr2 (75661999-75662506) | |
| 448-933, gnl|Hg17|chr1 (31721532-31722380) | |
| 448-933, gnl|Mm7|chr4 (129610853-129610251) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| amn (1.25313) | |
| cga (1.11638) | |
| pla (0.802032) | |
| hlv (0.278513) | |
| col (0.195008) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cli (0.152812) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (1.25313) | |
| cga (1.11638) | |
| pla (0.802032) | |
| hlv (0.278513) | |
| col (0.195008) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cli (0.152812) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) |