Ss1.1-Pig4-TMW8033C11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGCACAACAAGGCGGCGCCGCCGCAGATCCCGGACACCCGGCGGGAGCTGGCAGAGCT CGTGAAGCGGAAGCAGGAGCTGGCGGAAACACTGGCAAACTTAGAGAGACAGATCTATGC TTTTGAAGGAAGCTACCTGGAAGACACTCAGATGTATGGCAATATTATTCGTGGCTGGGA TCGGTATCTGACCAACCAAAAAAACTCCAATAGCAAAAACGATCGAAGGAACCGGAAGTT TAAGGAAGCGGAGCGGCTCTTCAGTAAATCCTCAGTTACTTCAGCAGCCGCAGTAAGTGC ATTGGCTGGAGTTCAGGACCAGCTCATTGAGAAGAGGGAACCAGGAAGTGGGACGGAAAG TGATACTTCTCCTGACTTCCACAATCAGGAAAACGAGCCCAGCCAGGAGGACCCTGAGGA TCTGGATGGATCTGTGCAGGGAGTGAAACCTCAGAAGGCTGCTTCTTCTACTTCCTCAGG GAGTCATCACAGCAGCCATAAAAAACGGAAGAATAAAAACCGGCACAGGATTGATCTGAA GTTAAACAAAAAACCACGCGCTGACTATTAGAAGACTCATTAGTGCAGAAGCTTCCAGGC TGCAGAGCCCTGCTTCCCTCCTCCGACCTCACAAAGATAAACATCCCTTACCTGAGTGGT GGCCATCCATCTCTGCTTGCCCAGACCCAGTGCCTGTGACTCTGAGTAGTTTGTTCGGAA ACGTGGTGACAAACAAGTCATTTCTGTAAGACCACATCGGATCATTCACTTTGTGTCATT TTTAGTAACAGAACTGCAGGAAGACCCAAGACATGGTTATAGTCCCAGCAAGCTGCTAAC TGTGCATTTCTCCCTTCTTGGAATGAACGTCTCCCCCCAGACTGGCTGGCACCAGCTTCA TCTGTGATACGCGTCGGAAAATGTTCTCTGGGTTTGTTTTTATGCTGAAAGTAGGACACA GGTCACATTTCAGAGGGAGGCTGTAAATATCTGGTGTTTTCTTATTTTGTTTGTGTTTTA TCATTTTTCTGTTGTTGTTTTTACCATCTTATTTTCTTTGGGGACTTTTCATAATGCCGT TGTACAGCTCATACCTTCCTGCTTACATATCTGATCATCTGTTTTGTGCAGTTGCCAATA TTCTGAACTGAAAATAATCTGGTTTACCATAAATAAAATGGGGACTTGGCTTTTGGGGGG TTTTTTGCAGGGGGAAGGTAAAGAGTGTTTATTTAAGAATTACCTATCTTAAATCTGAGT TGGAAGCAGTTTCATGTTCAAGGAACAGGAAAAGCTGAAAAGTGGGTTTAAATCAGTCCT TTTAAAATAGATATTTTTATTCTTTTTGTATAAATAAAATTTCACAGGCTTTGACTTCTC ATGCTTTACTTTTAAATCGGAAGTTGTTTTCTCACTTATTTATTCGTATCATGCCTTACG GAAATTTCTCTTTTTCCATCTCTTCTCTCTTTGCTGATATTTGCCTGATTAAATAATTGT TCTGAAAACCACTAAGGCAAATGGAAAGGCTCCATACTGTACCCAAAGCTGATAACATCC AGAGCTCTTGAGCCGAGTGAATGCATGATCACCGAGAGGCCGTGACGCCCAGCAGATGCC CTGTCCTTTCGGGGTGGATGGGCTGAGGAACCTGCTGACGGCTATTACCCGCCTCTGGAA CGACCCACCTCAGCTGCACATCGGCATCACATGGGATGCCTAAAAAGTACTGATGCCTGG GTCCCACCTGCCAAGACTGACGCAGGTGCAATCTAGCACTGGGGGGAGTCTTTCAAAGAG TCCCTGGGATTCTGATAAGAAGCCAAGTTGCGAACCACTGCATCAGAAGACTGGATGGTT CGATTTCAGTTCTCTGTCCTGAATCAGTTTAAGGGATGCAATGTGGGGCCTCACCTTTCC TTTGACTCTATTTAGTCATAGTCCCTTACTTATGTCCATATCTCTGTTAGAAAAAAAGAT GTTCCATTTGTGATAATATCGGTAGGACTGAACCAAGGATTGCGTCTGTGATCAAAACAC GTCTACCCTGTCAGATGTGCAAAAGCTTTCACTCTTGTTCTCAAATAAACGTTGTTTTTT TTTTTTAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGCACAACAAGGCGGCGCCGCCGCAGATCCCGGACACCCGGCGGGAGCTGGCAGAGCT CGTGAAGCGGAAGCAGGAGCTGGCGGAAACACTGGCAAACTTAGAGAGACAGATCTATGC TTTTGAAGGAAGCTACCTGGAAGACACTCAGATGTATGGCAATATTATTCGTGGCTGGGA TCGGTATCTGACCAACCAAAAAAACTCCAATAGCAAAAACGATCGAAGGAACCGGAAGTT TAAGGAAGCGGAGCGGCTCTTCAGTAAATCCTCAGTTACTTCAGCAGCCGCAGTAAGTGC ATTGGCTGGAGTTCAGGACCAGCTCATTGAGAAGAGGGAACCAGGAAGTGGGACGGAAAG TGATACTTCTCCTGACTTCCACAATCAGGAAAACGAGCCCAGCCAGGAGGACCCTGAGGA TCTGGATGGATCTGTGCAGGGAGTGAAACCTCAGAAGGCTGCTTCTTCTACTTCCTCAGG GAGTCATCACAGCAGCCATAAAAAACGGAAGAATAAAAACCGGCACAGGATTGATCTGAA GTTAAACAAAAAACCACGCGCTGACTATTAGAAGACTCATTAGTGCAGAAGCTTCCAGGC TGCAGAGCCCTGCTTCCCTCCTCCGACCTCACAAAGATAAACATCCCTTACCTGAGTGGT GGCCATCCATCTCTGCTTGCCCAGACCCAGTGCCTGTGACTCTGAGTAGTTTGTTCGGAA ACGTGGTGACAAACAAGTCATTTCTGTAAGACCACATCGGATCATTCACTTTGTGTCATT TTTAGTAACAGAACTGCAGGAAGACCCAAGACATGGTTATAGTCCCAGCAAGCTGCTAAC TGTGCATTTCTCCCTTCTTGGAATGAACGTCTCCCCCCAGACTGGCTGGCACCAGCTTCA TCTGTGATACGCGTCGGAAAATGTTCTCTGGGTTTGTTTTTATGCTGAAAGTAGGACACA GGTCACATTTCAGAGGGAGGCTGTAAATATCTGGTGTTTTCTTATTTTGTTTGTGTTTTA TCATTTTTCTGTTGTTGTTTTTACCATCTTATTTTCTTTGGGGACTTTTCATAATGCCGT TGTACAGCTCATACCTTCCTGCTTACATATCTGATCATCTGTTTTGTGCAGTTGCCAATA TTCTGAACTGAAAATAATCTGGTTTACCATAAATAAAATGGGGACTTGGCTTTTGGGGGG TTTTTTGCAGGGGGAAGGTAAAGAGTGTTTATTTAAGAATTACCTATCTTAAATCTGAGT TGGAAGCAGTTTCATGTTCAAGGAACAGGAAAAGCTGAAAAGTGGGTTTAAATCAGTCCT TTTAAAATAGATATTTTTATTCTTTTTGTATAAATAAAATTTCACAGGCTTTGACTTCTC ATGCTTTACTTTTAAATCGGAAGTTGTTTTCTCACTTATTTATTCGTATCATGCCTTACG GAAATTTCTCTTTTTCCATCTCTTCTCTCTTTGCTGATATTTGCCTGATTAAATAATTGT TCTGAAAACCACTAAGGCAAATGGAAAGGCTCCATACTGTACCCAAAGCTGATAACATCC AGAGCTCTTGAGCCGAGTGAATGCATGATCACCGAGAGGCCGTGACGCCCAGCAGATGCC CTGTCCTTTCGGGGTGGATGGGCTGAGGAACCTGCTGACGGCTATTACCCGCCTCTGGAA CGACCCACCTCAGCTGCACATCGGCATCACATGGGATGCCTAAAAAGTACTGATGCCTGG GTCCCACCTGCCAAGACTGACGCAGGTGCAATCTAGCACTGGGGGGAGTCTTTCAAAGAG TCCCTGGGATTCTGATAAGAAGCCAAGTTGCGAACCACTGCATCAGAAGACTGGATGGTT CGATTTCAGTTCTCTGTCCTGAATCAGTTTAAGGGATGCAATGTGGGGCCTCACCTTTCC TTTGACTCTATTTAGTCATAGTCCCTTACTTATGTCCATATCTCTGTTAGAAAAAAAGAT GTTCCATTTGTGATAATATCGGTAGGACTGAACCAAGGATTGCGTCTGTGATCAAAACAC GTCTACCCTGTCAGATGTGCAAAAGCTTTCACTCTTGTTCTCAAATAAACGTTGTTTTTT TTTTTTAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 412-529, - strand, RNAz p=0.976258 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 412-529, - strand, RNAz p=0.976258 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 85-201, gnl|bosTau2|chr3 (75780154-75780270) | |
| 85-201, gnl|canFam2|chr15 (7954346-7954150) | |
| 85-201, gnl|dasNov1|scaffold_24679 (375-562) | |
| 85-201, gnl|fr1|chrUn (86040786-86040925) | |
| 85-201, gnl|hg17|chr1 (37648112-37648300) | |
| 85-201, gnl|Hg17|chr1 (37648233-37648117) | |
| 85-201, gnl|mm7|chr4 (124530914-124530746) | |
| 85-201, gnl|Mm7|chr4 (124530791-124530907) | |
| 85-201, gnl|monDom2|scaffold_43 (12138204-12138010) | |
| 85-201, gnl|oryCun1|scaffold_154292 (3836-3671) | |
| 85-201, gnl|panTro1|chr1 (38488668-38488852) | |
| 85-201, gnl|rheMac2|chr1 (40374920-40375108) | |
| 85-201, gnl|rn3|chr5 (144437622-144437457) | |
| 85-201, gnl|tetNig1|chr21_random (127084-126919) | |
| 85-201, gnl|xenTro1|scaffold_1437 (121342-121164) | |
| 336-529, gnl|bosTau2|chr3 (75841490-75841683) | |
| 336-529, gnl|canFam2|chr15 (7968813-7968593) | |
| 336-529, gnl|canFam2|chr15 (7968612-7968799) | |
| 336-529, gnl|dasNov1|scaffold_26106 (51510-51317) | |
| 336-529, gnl|dasNov1|scaffold_26106 (51326-51505) | |
| 336-529, gnl|echTel1|scaffold_265556 (20740-20960) | |
| 336-529, gnl|echTel1|scaffold_265556 (20941-20754) | |
| 336-529, gnl|fr1|chrUn (86040005-86040228) | |
| 336-529, gnl|fr1|chrUn (86040202-86040019) | |
| 336-529, gnl|galGal2|chr23 (3308514-3308293) | |
| 336-529, gnl|galGal2|chr23 (3308320-3308500) | |
| 336-529, gnl|hg17|chr1 (37636490-37636711) | |
| 336-529, gnl|Hg17|chr1 (37636690-37636497) | |
| 336-529, gnl|hg17|chr2 (209872069-209872256) | |
| 336-529, gnl|loxAfr1|scaffold_172804 (508-288) | |
| 336-529, gnl|loxAfr1|scaffold_172804 (307-494) | |
| 336-529, gnl|mm7|chr4 (124547688-124547470) | |
| 336-529, gnl|mm7|chr4 (124547487-124547674) | |
| 336-529, gnl|Mm7|chr4 (124547486-124547679) | |
| 336-529, gnl|monDom2|scaffold_43 (12154766-12154546) | |
| 336-529, gnl|monDom2|scaffold_43 (12154565-12154752) | |
| 336-529, gnl|oryCun1|scaffold_201047 (17963-18182) | |
| 336-529, gnl|oryCun1|scaffold_201047 (18164-17977) | |
| 336-529, gnl|panTro1|chr1 (38475342-38475563) | |
| 336-529, gnl|panTro1|chr13_random (27289733-27289546) | |
| 336-529, gnl|rheMac2|chr1 (40363004-40363225) | |
| 336-529, gnl|rheMac2|chr12 (72980866-72981054) | |
| 336-529, gnl|rn3|chr5 (144452871-144452653) | |
| 336-529, gnl|rn3|chr5 (144452670-144452857) | |
| 336-529, gnl|tetNig1|chr21_random (127679-127472) | |
| 336-529, gnl|tetNig1|chr21_random (127487-127665) | |
| 336-529, gnl|xenTro1|scaffold_1437 (123395-123183) | |
| 336-529, gnl|xenTro1|scaffold_1437 (123198-123385) | |
| 563-1393, gnl|bosTau2|chr3 (75846868-75847699) | |
| 563-1393, gnl|Hg17|chr1 (37628801-37628002) | |
| 563-1393, gnl|Mm7|chr4 (124553946-124554732) | |
| 1397-2112, gnl|bosTau2|chr17 (18627614-18626889) | |
| 1397-2112, gnl|Hg17|chr1 (37627982-37627269) | |
| 1397-2112, gnl|Mm7|chr4 (124554746-124555366) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-201, gnl|bosTau2|chr3 (75780154-75780270) | |
| 85-201, gnl|canFam2|chr15 (7954346-7954150) | |
| 85-201, gnl|dasNov1|scaffold_24679 (375-562) | |
| 85-201, gnl|fr1|chrUn (86040786-86040925) | |
| 85-201, gnl|hg17|chr1 (37648112-37648300) | |
| 85-201, gnl|Hg17|chr1 (37648233-37648117) | |
| 85-201, gnl|mm7|chr4 (124530914-124530746) | |
| 85-201, gnl|Mm7|chr4 (124530791-124530907) | |
| 85-201, gnl|monDom2|scaffold_43 (12138204-12138010) | |
| 85-201, gnl|oryCun1|scaffold_154292 (3836-3671) | |
| 85-201, gnl|panTro1|chr1 (38488668-38488852) | |
| 85-201, gnl|rheMac2|chr1 (40374920-40375108) | |
| 85-201, gnl|rn3|chr5 (144437622-144437457) | |
| 85-201, gnl|tetNig1|chr21_random (127084-126919) | |
| 85-201, gnl|xenTro1|scaffold_1437 (121342-121164) | |
| 336-529, gnl|bosTau2|chr3 (75841490-75841683) | |
| 336-529, gnl|canFam2|chr15 (7968813-7968593) | |
| 336-529, gnl|canFam2|chr15 (7968612-7968799) | |
| 336-529, gnl|dasNov1|scaffold_26106 (51510-51317) | |
| 336-529, gnl|dasNov1|scaffold_26106 (51326-51505) | |
| 336-529, gnl|echTel1|scaffold_265556 (20740-20960) | |
| 336-529, gnl|echTel1|scaffold_265556 (20941-20754) | |
| 336-529, gnl|fr1|chrUn (86040005-86040228) | |
| 336-529, gnl|fr1|chrUn (86040202-86040019) | |
| 336-529, gnl|galGal2|chr23 (3308514-3308293) | |
| 336-529, gnl|galGal2|chr23 (3308320-3308500) | |
| 336-529, gnl|hg17|chr1 (37636490-37636711) | |
| 336-529, gnl|Hg17|chr1 (37636690-37636497) | |
| 336-529, gnl|hg17|chr2 (209872069-209872256) | |
| 336-529, gnl|loxAfr1|scaffold_172804 (508-288) | |
| 336-529, gnl|loxAfr1|scaffold_172804 (307-494) | |
| 336-529, gnl|mm7|chr4 (124547688-124547470) | |
| 336-529, gnl|mm7|chr4 (124547487-124547674) | |
| 336-529, gnl|Mm7|chr4 (124547486-124547679) | |
| 336-529, gnl|monDom2|scaffold_43 (12154766-12154546) | |
| 336-529, gnl|monDom2|scaffold_43 (12154565-12154752) | |
| 336-529, gnl|oryCun1|scaffold_201047 (17963-18182) | |
| 336-529, gnl|oryCun1|scaffold_201047 (18164-17977) | |
| 336-529, gnl|panTro1|chr1 (38475342-38475563) | |
| 336-529, gnl|panTro1|chr13_random (27289733-27289546) | |
| 336-529, gnl|rheMac2|chr1 (40363004-40363225) | |
| 336-529, gnl|rheMac2|chr12 (72980866-72981054) | |
| 336-529, gnl|rn3|chr5 (144452871-144452653) | |
| 336-529, gnl|rn3|chr5 (144452670-144452857) | |
| 336-529, gnl|tetNig1|chr21_random (127679-127472) | |
| 336-529, gnl|tetNig1|chr21_random (127487-127665) | |
| 336-529, gnl|xenTro1|scaffold_1437 (123395-123183) | |
| 336-529, gnl|xenTro1|scaffold_1437 (123198-123385) | |
| 563-1393, gnl|bosTau2|chr3 (75846868-75847699) | |
| 563-1393, gnl|Hg17|chr1 (37628801-37628002) | |
| 563-1393, gnl|Mm7|chr4 (124553946-124554732) | |
| 1397-2112, gnl|bosTau2|chr17 (18627614-18626889) | |
| 1397-2112, gnl|Hg17|chr1 (37627982-37627269) | |
| 1397-2112, gnl|Mm7|chr4 (124554746-124555366) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| bla (0.373042) | |
| sme (0.305437) | |
| spl (0.286369) | |
| pty (0.285429) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| cty (0.20816) | |
| hea (0.204499) | |
| aor (0.195274) | |
| nep (0.183925) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cki (0.165235) | |
| che (0.136314) | |
| ret (0.128733) | |
| sug (0.127291) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| med (0.116252) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.373042) | |
| sme (0.305437) | |
| spl (0.286369) | |
| pty (0.285429) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| cty (0.20816) | |
| hea (0.204499) | |
| aor (0.195274) | |
| nep (0.183925) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cki (0.165235) | |
| che (0.136314) | |
| ret (0.128733) | |
| sug (0.127291) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| med (0.116252) |