Ss1.1-Pig4-TMW8033C18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCCCCCAGTCAATGTGCCACAGGTATCCTCCATGCAGATGGGAGCAGTCGATCTCTTG GGAGGAGGACTGGATAGTCTGCTTGGCAGTGACCTTGGCGGGGGCATTGGAGGAAGTCCG GCAGTGGGACAGTCCTTCATCCCATCATCAGTGCCTGCCACCTTTGCTCCTTCACCTACT CCTGCTGTGGTCAGCAGTGGTCTGAATGACTTGTTTGAGCTCTCCACGGGGATAGGCATG GCGCCTGGTGGATACGTGGCTCCTAAGGCTGTCTGGCTGCCTGCAGTAAAGGCTAAAGGC TTGGAGATTTCAGGAACATTTACTCACCGCCAAGGGCATATCTATATGGAAATGAACTTC ACCAACAAAGCTCTGCAGCACATGACGGACTTTGCAATTCAGTTTAACAAGAATAGTTTT GGGGTCATCCCCAGCACTCCTCTGGCCATCCATACCCCACTGATGCCAAACCAGAGCATT GATGTCTCCCTGCCTCTCAACACTTTGGGCCCAGTCATGAAGATGGAACCTCTAAACAAC CTGCAGGTGGCGGTGAAAAACAATATTGATGTCTTCTACTTCAGCTGCCTCATTCCACTG AACGTGCTTTTTGTAGAAGATGGCAAAATGGAGCGCCAGGTCTTCCTTGCAACATGGAAG GATATTCCCAATGAAAATGAACTTCAATTTCAGATTAAGGAATGTCATTTAAATGCTGAC ACTGTTTCCAGCAAGTTGCAAAACAACAATGTTTATACTATTGCCAAGAGGAATGTGGAA GGGCAAGACATGCTGTACCAATCCCTGAAGCTTACTAACGGCATTTGGATTTTGGCCGAA CTACGTATCCAGCCAGGAAATCCCAATTACACGCTGTCGCTGAAGTGTAGAGCCCCTGAG GTCTCCCAGTACATCTACCAGGTCTACGACAGCATTTTGAAAAACTAGTAGACTGGTCCA GTGCCCTCCGGCCACCCTGCAATCGGTGCAAGCCAAGAACTCTTAATTGGAAGAAGTTGT ATGCACTGAGGCCACCTGCCAAGGTAGTGACTAGTCTAACCTGTGCTAATATTAGGGCAC AACCTGTTGGATAGTTTTAGCTTCCTGTGAACGTTTGTAACCACTGCTTCAATCACTTCC CACCTCTTGCCACCTGCTGCTCTCTGTCCCTATCATGGGCTTCTCTACCCTGTGCCAGTG GCTGGCATTTTTGAGTGTAGTTTGATATTTTGTAATTGAGAGCTCATTTCAAAAGCAGTA AAAAACAAAAAATATTAAAGCAAGGAAAAGTGTCACTGAAACGTAAACTGCACTTTATTG TTTATATTTTTGTACATATGAGAAATTGAGGGAATAGTGTGTAACTGCTAGAAACGTTTA AACAACTTACTGTCATTAATTGCAGAGTCCTGGAGGAAAAAATGCAGTTTGTCGCTTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCCCCCAGTCAATGTGCCACAGGTATCCTCCATGCAGATGGGAGCAGTCGATCTCTTG GGAGGAGGACTGGATAGTCTGCTTGGCAGTGACCTTGGCGGGGGCATTGGAGGAAGTCCG GCAGTGGGACAGTCCTTCATCCCATCATCAGTGCCTGCCACCTTTGCTCCTTCACCTACT CCTGCTGTGGTCAGCAGTGGTCTGAATGACTTGTTTGAGCTCTCCACGGGGATAGGCATG GCGCCTGGTGGATACGTGGCTCCTAAGGCTGTCTGGCTGCCTGCAGTAAAGGCTAAAGGC TTGGAGATTTCAGGAACATTTACTCACCGCCAAGGGCATATCTATATGGAAATGAACTTC ACCAACAAAGCTCTGCAGCACATGACGGACTTTGCAATTCAGTTTAACAAGAATAGTTTT GGGGTCATCCCCAGCACTCCTCTGGCCATCCATACCCCACTGATGCCAAACCAGAGCATT GATGTCTCCCTGCCTCTCAACACTTTGGGCCCAGTCATGAAGATGGAACCTCTAAACAAC CTGCAGGTGGCGGTGAAAAACAATATTGATGTCTTCTACTTCAGCTGCCTCATTCCACTG AACGTGCTTTTTGTAGAAGATGGCAAAATGGAGCGCCAGGTCTTCCTTGCAACATGGAAG GATATTCCCAATGAAAATGAACTTCAATTTCAGATTAAGGAATGTCATTTAAATGCTGAC ACTGTTTCCAGCAAGTTGCAAAACAACAATGTTTATACTATTGCCAAGAGGAATGTGGAA GGGCAAGACATGCTGTACCAATCCCTGAAGCTTACTAACGGCATTTGGATTTTGGCCGAA CTACGTATCCAGCCAGGAAATCCCAATTACACGCTGTCGCTGAAGTGTAGAGCCCCTGAG GTCTCCCAGTACATCTACCAGGTCTACGACAGCATTTTGAAAAACTAGTAGACTGGTCCA GTGCCCTCCGGCCACCCTGCAATCGGTGCAAGCCAAGAACTCTTAATTGGAAGAAGTTGT ATGCACTGAGGCCACCTGCCAAGGTAGTGACTAGTCTAACCTGTGCTAATATTAGGGCAC AACCTGTTGGATAGTTTTAGCTTCCTGTGAACGTTTGTAACCACTGCTTCAATCACTTCC CACCTCTTGCCACCTGCTGCTCTCTGTCCCTATCATGGGCTTCTCTACCCTGTGCCAGTG GCTGGCATTTTTGAGTGTAGTTTGATATTTTGTAATTGAGAGCTCATTTCAAAAGCAGTA AAAAACAAAAAATATTAAAGCAAGGAAAAGTGTCACTGAAACGTAAACTGCACTTTATTG TTTATATTTTTGTACATATGAGAAATTGAGGGAATAGTGTGTAACTGCTAGAAACGTTTA AACAACTTACTGTCATTAATTGCAGAGTCCTGGAGGAAAAAATGCAGTTTGTCGCTTAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 271-408, gnl|bosTau2|chr17 (39360371-39360234) | |
| 271-408, gnl|canFam2|chr26 (25669427-25669582) | |
| 271-408, gnl|danRer3|chr5 (14322691-14322526) | |
| 271-408, gnl|dasNov1|scaffold_37623 (43519-43376) | |
| 271-408, gnl|echTel1|scaffold_295808 (48951-48798) | |
| 271-408, gnl|fr1|chrUn (2112631-2112482) | |
| 271-408, gnl|galGal2|chr15 (11002710-11002552) | |
| 271-408, gnl|hg17|chr22 (28054794-28054952) | |
| 271-408, gnl|Hg17|chr22 (28054953-28054816) | |
| 271-408, gnl|loxAfr1|scaffold_8358 (19449-19608) | |
| 271-408, gnl|mm7|chr11 (4989793-4989638) | |
| 271-408, gnl|Mm7|chr11 (4989635-4989772) | |
| 271-408, gnl|monDom2|scaffold_89 (3136560-3136715) | |
| 271-408, gnl|panTro1|chr23_random (8672527-8672685) | |
| 271-408, gnl|rheMac2|chr10 (73161181-73161337) | |
| 271-408, gnl|rn3|chr14 (85709561-85709409) | |
| 271-408, gnl|tetNig1|chr12 (6679064-6678915) | |
| 271-408, gnl|xenTro1|scaffold_207 (415812-415959) | |
| 414-548, gnl|bosTau2|chr19 (8061683-8061549) | |
| 414-548, gnl|canFam2|chr9 (41306080-41305907) | |
| 414-548, gnl|danRer3|chr5 (67064481-67064341) | |
| 414-548, gnl|dasNov1|scaffold_59082 (7738-7566) | |
| 414-548, gnl|echTel1|scaffold_299079 (2542-2418) | |
| 414-548, gnl|fr1|chrUn (196283374-196283523) | |
| 414-548, gnl|galGal2|chr19 (4131771-4131603) | |
| 414-548, gnl|hg17|chr17 (31033811-31033983) | |
| 414-548, gnl|Hg17|chr17 (31033824-31033958) | |
| 414-548, gnl|loxAfr1|scaffold_9481 (33593-33765) | |
| 414-548, gnl|mm7|chr11 (83439544-83439712) | |
| 414-548, gnl|Mm7|chr11 (83439555-83439689) | |
| 414-548, gnl|monDom2|scaffold_44 (7262158-7261986) | |
| 414-548, gnl|oryCun1|scaffold_204337 (26882-26710) | |
| 414-548, gnl|panTro1|chr19 (34556224-34556396) | |
| 414-548, gnl|rheMac2|chr16 (30950140-30950312) | |
| 414-548, gnl|rn3|chr10 (71464056-71464228) | |
| 414-548, gnl|tetNig1|chr7 (10220292-10220435) | |
| 414-548, gnl|xenTro1|scaffold_38 (1014502-1014320) | |
| 729-876, gnl|bosTau2|chr17 (39357200-39357053) | |
| 729-876, gnl|Hg17|chr22 (28051065-28050918) | |
| 729-876, gnl|Mm7|chr11 (4992280-4992427) | |
| 1013-1386, gnl|bosTau2|chr19 (8026491-8026113) | |
| 1013-1386, gnl|Hg17|chr17 (31074922-31075312) | |
| 1013-1386, gnl|Mm7|chr11 (83472629-83472996) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 271-408, gnl|bosTau2|chr17 (39360371-39360234) | |
| 271-408, gnl|canFam2|chr26 (25669427-25669582) | |
| 271-408, gnl|danRer3|chr5 (14322691-14322526) | |
| 271-408, gnl|dasNov1|scaffold_37623 (43519-43376) | |
| 271-408, gnl|echTel1|scaffold_295808 (48951-48798) | |
| 271-408, gnl|fr1|chrUn (2112631-2112482) | |
| 271-408, gnl|galGal2|chr15 (11002710-11002552) | |
| 271-408, gnl|hg17|chr22 (28054794-28054952) | |
| 271-408, gnl|Hg17|chr22 (28054953-28054816) | |
| 271-408, gnl|loxAfr1|scaffold_8358 (19449-19608) | |
| 271-408, gnl|mm7|chr11 (4989793-4989638) | |
| 271-408, gnl|Mm7|chr11 (4989635-4989772) | |
| 271-408, gnl|monDom2|scaffold_89 (3136560-3136715) | |
| 271-408, gnl|panTro1|chr23_random (8672527-8672685) | |
| 271-408, gnl|rheMac2|chr10 (73161181-73161337) | |
| 271-408, gnl|rn3|chr14 (85709561-85709409) | |
| 271-408, gnl|tetNig1|chr12 (6679064-6678915) | |
| 271-408, gnl|xenTro1|scaffold_207 (415812-415959) | |
| 414-548, gnl|bosTau2|chr19 (8061683-8061549) | |
| 414-548, gnl|canFam2|chr9 (41306080-41305907) | |
| 414-548, gnl|danRer3|chr5 (67064481-67064341) | |
| 414-548, gnl|dasNov1|scaffold_59082 (7738-7566) | |
| 414-548, gnl|echTel1|scaffold_299079 (2542-2418) | |
| 414-548, gnl|fr1|chrUn (196283374-196283523) | |
| 414-548, gnl|galGal2|chr19 (4131771-4131603) | |
| 414-548, gnl|hg17|chr17 (31033811-31033983) | |
| 414-548, gnl|Hg17|chr17 (31033824-31033958) | |
| 414-548, gnl|loxAfr1|scaffold_9481 (33593-33765) | |
| 414-548, gnl|mm7|chr11 (83439544-83439712) | |
| 414-548, gnl|Mm7|chr11 (83439555-83439689) | |
| 414-548, gnl|monDom2|scaffold_44 (7262158-7261986) | |
| 414-548, gnl|oryCun1|scaffold_204337 (26882-26710) | |
| 414-548, gnl|panTro1|chr19 (34556224-34556396) | |
| 414-548, gnl|rheMac2|chr16 (30950140-30950312) | |
| 414-548, gnl|rn3|chr10 (71464056-71464228) | |
| 414-548, gnl|tetNig1|chr7 (10220292-10220435) | |
| 414-548, gnl|xenTro1|scaffold_38 (1014502-1014320) | |
| 729-876, gnl|bosTau2|chr17 (39357200-39357053) | |
| 729-876, gnl|Hg17|chr22 (28051065-28050918) | |
| 729-876, gnl|Mm7|chr11 (4992280-4992427) | |
| 1013-1386, gnl|bosTau2|chr19 (8026491-8026113) | |
| 1013-1386, gnl|Hg17|chr17 (31074922-31075312) | |
| 1013-1386, gnl|Mm7|chr11 (83472629-83472996) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| tes (1.24688) | |
| ldo (0.679018) | |
| cte (0.58548) | |
| cut (0.509771) | |
| fcc (0.39557) | |
| spl (0.286369) | |
| ste (0.270416) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (1.24688) | |
| ldo (0.679018) | |
| cte (0.58548) | |
| cut (0.509771) | |
| fcc (0.39557) | |
| spl (0.286369) | |
| ste (0.270416) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |