Ss1.1-Pig4-TMW8033C21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAGAAAAATGAAACTGTACACAGCCAGGTGGAGGAGCTCCTGACCACACTGGAGAAGA GTGGTGCCGGCGTCCCCACCGTCGTCCTCAGGAGGCCGAATCAGACGCAGCCTCTCCCCC CATCTTCTCTGCAGCGATTTCTTCGCGCTCGAAACATCTCTGGCGTTGTTCTTGCCGACC ACTCCACTGTCTTCCATAACCACTACTACCAGAGCGTTTACGACACTGCTGAGAACATTA ACGTGAGCTACCCTGAGTGGCAGAGCCCTGAAGAGGACCTGAACTTTGTGACAGACACTG CCAAGGCTCTGGCAGATGTGGCCACAGTGCTGTCACGTGCACTGTACCAGCTTGCAGGAG GAACCAACTTCAGTACCATTCAGGCTGATCCCAAAACGGTTACCCGCCTGCTCTACGGGT TCCTGGTTAGAGCCAACAACTCATGGTTCCAGTCCATCCTCAGGCAAGACCTAAGGTCCT ACTTGGGCGACGGGCCTCTTCAGCATTACATAGCCGTCTCCAGCCCCACCAACACCACAT ACATCGTGCAGTATGCCCTGGCAAATTTGACTGGCAAGGTGATGGACCTTACCCGAGAGC AGTGCCAGGATCCAAGTAAAATCCCCACTGAAAACAAAGACCTGTATGAGTACGCTTGGG TTCAGGGCCCTTTGAATCCCAACGAGACAGACCGGCTGCCCCGGTGTGTGCGTTCCACGG CACGACTGGCCAGGGCCTTGTCCCCTGCCTTTGAACTGAGGCAGTGGGGCTCTACTGAGT ACTCCACATGGACTGAGAGCCGCTGGAAAGATATCCGCGCCCGGATATTTCTGATAGCCA GCAAAGAACTGGAGTTCATCACTCTCATGGTGGGCTTCGGCATCCTCGTCTTCTCTCTCG TTGTCACCTACTGCATCAATGCCAAAGCCGACGTCCTTTTCATTGCTCCCCGGGAACCGG GATCTGTGTCTTACTGAAGAGGACCCCAGCTTTTCCTGCCAGCTCTGCAGTTCACTTCCT AGATCACCTGTCCCACCGAGACATAAACCACTAGTTTGTCACTGGAGCCTCTCTGGGTCT GACTCAGACTAACATTAAAGAAGTGGAACTGCCCAAAAGAGACCATGAGAGATAAATATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAGAAAAATGAAACTGTACACAGCCAGGTGGAGGAGCTCCTGACCACACTGGAGAAGA GTGGTGCCGGCGTCCCCACCGTCGTCCTCAGGAGGCCGAATCAGACGCAGCCTCTCCCCC CATCTTCTCTGCAGCGATTTCTTCGCGCTCGAAACATCTCTGGCGTTGTTCTTGCCGACC ACTCCACTGTCTTCCATAACCACTACTACCAGAGCGTTTACGACACTGCTGAGAACATTA ACGTGAGCTACCCTGAGTGGCAGAGCCCTGAAGAGGACCTGAACTTTGTGACAGACACTG CCAAGGCTCTGGCAGATGTGGCCACAGTGCTGTCACGTGCACTGTACCAGCTTGCAGGAG GAACCAACTTCAGTACCATTCAGGCTGATCCCAAAACGGTTACCCGCCTGCTCTACGGGT TCCTGGTTAGAGCCAACAACTCATGGTTCCAGTCCATCCTCAGGCAAGACCTAAGGTCCT ACTTGGGCGACGGGCCTCTTCAGCATTACATAGCCGTCTCCAGCCCCACCAACACCACAT ACATCGTGCAGTATGCCCTGGCAAATTTGACTGGCAAGGTGATGGACCTTACCCGAGAGC AGTGCCAGGATCCAAGTAAAATCCCCACTGAAAACAAAGACCTGTATGAGTACGCTTGGG TTCAGGGCCCTTTGAATCCCAACGAGACAGACCGGCTGCCCCGGTGTGTGCGTTCCACGG CACGACTGGCCAGGGCCTTGTCCCCTGCCTTTGAACTGAGGCAGTGGGGCTCTACTGAGT ACTCCACATGGACTGAGAGCCGCTGGAAAGATATCCGCGCCCGGATATTTCTGATAGCCA GCAAAGAACTGGAGTTCATCACTCTCATGGTGGGCTTCGGCATCCTCGTCTTCTCTCTCG TTGTCACCTACTGCATCAATGCCAAAGCCGACGTCCTTTTCATTGCTCCCCGGGAACCGG GATCTGTGTCTTACTGAAGAGGACCCCAGCTTTTCCTGCCAGCTCTGCAGTTCACTTCCT AGATCACCTGTCCCACCGAGACATAAACCACTAGTTTGTCACTGGAGCCTCTCTGGGTCT GACTCAGACTAACATTAAAGAAGTGGAACTGCCCAAAAGAGACCATGAGAGATAAATATG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 26-201, gnl|bosTau2|chr3 (4706845-4706670) | |
| 26-201, gnl|canFam2|chr38 (24881921-24881708) | |
| 26-201, gnl|fr1|chrUn (275881206-275881020) | |
| 26-201, gnl|galGal2|chrUn (8024791-8024609) | |
| 26-201, gnl|hg17|chr1 (157136972-157137191) | |
| 26-201, gnl|Hg17|chr1 (157136977-157137152) | |
| 26-201, gnl|loxAfr1|scaffold_9646 (22211-21993) | |
| 26-201, gnl|mm7|chr1 (172040332-172040115) | |
| 26-201, gnl|Mm7|chr1 (172040325-172040150) | |
| 26-201, gnl|monDom2|scaffold_13 (61128564-61128348) | |
| 26-201, gnl|oryCun1|scaffold_117384 (2544-2758) | |
| 26-201, gnl|panTro1|chr1 (139217101-139217320) | |
| 26-201, gnl|rheMac2|chr1 (138972333-138972552) | |
| 26-201, gnl|rn3|chr13 (88254020-88253812) | |
| 26-201, gnl|tetNig1|chrUn_random (40704836-40705012) | |
| 26-201, gnl|xenTro1|scaffold_96 (2023058-2023238) | |
| 486-640, gnl|bosTau2|chr3 (4703759-4703605) | |
| 486-640, gnl|canFam2|chr38 (24879574-24879409) | |
| 486-640, gnl|dasNov1|scaffold_48666 (1334-1171) | |
| 486-640, gnl|echTel1|scaffold_307757 (5356-5191) | |
| 486-640, gnl|fr1|chrUn (275878577-275878412) | |
| 486-640, gnl|galGal2|chrUn (8022260-8022095) | |
| 486-640, gnl|hg17|chr1 (157139460-157139625) | |
| 486-640, gnl|Hg17|chr1 (157139462-157139616) | |
| 486-640, gnl|mm7|chr1 (172038121-172037956) | |
| 486-640, gnl|Mm7|chr1 (172038117-172037963) | |
| 486-640, gnl|monDom2|scaffold_13 (61125893-61125729) | |
| 486-640, gnl|oryCun1|scaffold_117384 (5770-5935) | |
| 486-640, gnl|panTro1|chr1 (139219581-139219746) | |
| 486-640, gnl|rheMac2|chr1 (138975140-138975305) | |
| 486-640, gnl|rn3|chr13 (88251381-88251216) | |
| 486-640, gnl|tetNig1|chrUn_random (40705785-40705957) | |
| 486-640, gnl|xenTro1|scaffold_96 (2025301-2025461) | |
| 849-1135, gnl|bosTau2|chr3 (4702567-4702279) | |
| 849-1135, gnl|canFam2|chr38 (24878418-24878223) | |
| 849-1135, gnl|canFam2|chr38 (24878418-24877945) | |
| 849-1135, gnl|echTel1|scaffold_307757 (3617-3456) | |
| 849-1135, gnl|echTel1|scaffold_307757 (3616-3169) | |
| 849-1135, gnl|Hg17|chr1 (157141006-157141296) | |
| 849-1135, gnl|hg17|chr12 (49105638-49106107) | |
| 849-1135, gnl|hg17|chr21 (27786330-27786523) | |
| 849-1135, gnl|mm7|chr1 (172036972-172036778) | |
| 849-1135, gnl|mm7|chr1 (172036972-172036512) | |
| 849-1135, gnl|Mm7|chr1 (172036975-172036696) | |
| 849-1135, gnl|monDom2|scaffold_13 (61124336-61124137) | |
| 849-1135, gnl|monDom2|scaffold_13 (61124336-61123893) | |
| 849-1135, gnl|oryCun1|scaffold_203252 (140492-140302) | |
| 849-1135, gnl|oryCun1|scaffold_203252 (140492-140011) | |
| 849-1135, gnl|panTro1|chr10 (50321684-50322151) | |
| 849-1135, gnl|panTro1|chr22 (27785754-27785950) | |
| 849-1135, gnl|rheMac2|chr11 (47569597-47570070) | |
| 849-1135, gnl|rheMac2|chr3 (19144997-19144805) | |
| 849-1135, gnl|rn3|chr13 (88250165-88249971) | |
| 849-1135, gnl|rn3|chr13 (88250165-88249695) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-201, gnl|bosTau2|chr3 (4706845-4706670) | |
| 26-201, gnl|canFam2|chr38 (24881921-24881708) | |
| 26-201, gnl|fr1|chrUn (275881206-275881020) | |
| 26-201, gnl|galGal2|chrUn (8024791-8024609) | |
| 26-201, gnl|hg17|chr1 (157136972-157137191) | |
| 26-201, gnl|Hg17|chr1 (157136977-157137152) | |
| 26-201, gnl|loxAfr1|scaffold_9646 (22211-21993) | |
| 26-201, gnl|mm7|chr1 (172040332-172040115) | |
| 26-201, gnl|Mm7|chr1 (172040325-172040150) | |
| 26-201, gnl|monDom2|scaffold_13 (61128564-61128348) | |
| 26-201, gnl|oryCun1|scaffold_117384 (2544-2758) | |
| 26-201, gnl|panTro1|chr1 (139217101-139217320) | |
| 26-201, gnl|rheMac2|chr1 (138972333-138972552) | |
| 26-201, gnl|rn3|chr13 (88254020-88253812) | |
| 26-201, gnl|tetNig1|chrUn_random (40704836-40705012) | |
| 26-201, gnl|xenTro1|scaffold_96 (2023058-2023238) | |
| 486-640, gnl|bosTau2|chr3 (4703759-4703605) | |
| 486-640, gnl|canFam2|chr38 (24879574-24879409) | |
| 486-640, gnl|dasNov1|scaffold_48666 (1334-1171) | |
| 486-640, gnl|echTel1|scaffold_307757 (5356-5191) | |
| 486-640, gnl|fr1|chrUn (275878577-275878412) | |
| 486-640, gnl|galGal2|chrUn (8022260-8022095) | |
| 486-640, gnl|hg17|chr1 (157139460-157139625) | |
| 486-640, gnl|Hg17|chr1 (157139462-157139616) | |
| 486-640, gnl|mm7|chr1 (172038121-172037956) | |
| 486-640, gnl|Mm7|chr1 (172038117-172037963) | |
| 486-640, gnl|monDom2|scaffold_13 (61125893-61125729) | |
| 486-640, gnl|oryCun1|scaffold_117384 (5770-5935) | |
| 486-640, gnl|panTro1|chr1 (139219581-139219746) | |
| 486-640, gnl|rheMac2|chr1 (138975140-138975305) | |
| 486-640, gnl|rn3|chr13 (88251381-88251216) | |
| 486-640, gnl|tetNig1|chrUn_random (40705785-40705957) | |
| 486-640, gnl|xenTro1|scaffold_96 (2025301-2025461) | |
| 849-1135, gnl|bosTau2|chr3 (4702567-4702279) | |
| 849-1135, gnl|canFam2|chr38 (24878418-24878223) | |
| 849-1135, gnl|canFam2|chr38 (24878418-24877945) | |
| 849-1135, gnl|echTel1|scaffold_307757 (3617-3456) | |
| 849-1135, gnl|echTel1|scaffold_307757 (3616-3169) | |
| 849-1135, gnl|Hg17|chr1 (157141006-157141296) | |
| 849-1135, gnl|hg17|chr12 (49105638-49106107) | |
| 849-1135, gnl|hg17|chr21 (27786330-27786523) | |
| 849-1135, gnl|mm7|chr1 (172036972-172036778) | |
| 849-1135, gnl|mm7|chr1 (172036972-172036512) | |
| 849-1135, gnl|Mm7|chr1 (172036975-172036696) | |
| 849-1135, gnl|monDom2|scaffold_13 (61124336-61124137) | |
| 849-1135, gnl|monDom2|scaffold_13 (61124336-61123893) | |
| 849-1135, gnl|oryCun1|scaffold_203252 (140492-140302) | |
| 849-1135, gnl|oryCun1|scaffold_203252 (140492-140011) | |
| 849-1135, gnl|panTro1|chr10 (50321684-50322151) | |
| 849-1135, gnl|panTro1|chr22 (27785754-27785950) | |
| 849-1135, gnl|rheMac2|chr11 (47569597-47570070) | |
| 849-1135, gnl|rheMac2|chr3 (19144997-19144805) | |
| 849-1135, gnl|rn3|chr13 (88250165-88249971) | |
| 849-1135, gnl|rn3|chr13 (88250165-88249695) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| elu (0.385356) | |
| ute (0.265569) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ute (0.265569) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) |