Ss1.1-Pig4-TMW8033D06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTAAGTGGTTTCTGAATGATCTCCGGAGGCTGGTGCGTTCGGACCTCGGCCAACCATAAA AAATGACGACGGCAGCTAGGCCAACTTTTGAACCTGCAAGAGGTGGGAGAGGAAAAGGAG AAGGTGATTTGAGCCAACTCTCCAAGCAATATTCAAGTAGAGACCTACCCTCTCATACGA AGATAAAATATAGACAGACCACTCAGGATGCCCCCGAAGAGGTTCGGAACCGCGACTTCA GGAGAGAGTTGGAAGAGAGAGAGAGAGCTGCTGCAAGAGAAAAAAATAGAGATAGGCCGA CCCGAGAACATACAACCTCCTCCTCGGTGTCAAAGAAGCCTCGGTTAGACCAGATTCCTG CCGCCAACCTCGACGCAGATGACCCTCTAACAGATGAGGAGGATGAAGATGAAGATTTTG AAGAGGAAAGTGATGATGATGATACCGCAGCTCTTCTTGCAGAGCTGGAAAAAATCAAGA AAGAGCGAGCTGAAGAGCAGGCCAGGAAGGAACAAGAACAGAAGGCTGAAGAAGAAAGGA TTCGTATGGAAAACATTCTGAGTGGAAACCCTCTCCTTAACCTCACTGGCCCATCCCAGC CTCAGTCCAACTTCAAAGTTAAAAGAAGGTGGGATGATGACGTTGTTTTCAAGAACTGTG CAAAAGGTGTAGATGATCAGAAGAAAGACAAGAGATTTGTAAATGATACGCTACGATCTG AATTTCACAAAAAGTTCATGGAGAAATATATTAAATAGTACAGTTTTATGTGCTTAATTA AAGGCTGTAAAATGTAAACCATCTGACTTTATTTCGGTAGGTTTGTTTTTCTCCCCCTGC CTCCCAATCTAAATTGTGTATAGGCTTCCCTAATTTTAAGTTCCAAAATGTCTTTCCCTT TAACGATTCTTTATTCAGTGAAGACTTGGGAATTGGTTTCACCCAGTTTTCATCTCTGAC TATTTCCAGTCATGTCATTTATTTTGAATATGGGAAAGGGAATCTGCTTGTAATAAATAT TTTTAATAATCTAAATAGCCAAATCTGTGTCCCAACTTTTTGTTGAAATGTATGCAGCTT ATAAAACGTTGTGTATTTTCTTTTGTGTATTGCATTTCTTTGCGAATTAACCTTTCCTCC TCATTTTTCTAACTTTGATTTAAAGTCAGTTAATTCATGGTTTCTTTTCTGTGTCTTGAA GAGTGTGGTGAAAGATTAAAGGGATTCCAAGTTGGACCAACATGTTGCTATGGAGGAGTG TGGTCAAGCAGGAAGTACCCCGAGTGTGTGTGTCTGAGGGAGCGTGGGTACCTCTCACTT CTGCAGATGCTCCTTTCTTGTCTCTCAGCCCAGGAGCTCCTTAAGCATGCCAAGGAAGCT TGTGCCGATCACCTGTGTTCTAGATACTCCCCTGGCATGTTTCTCTTAAATGACATAGAG TTGCATACTGGCACTCATTCGCTGCAAAGCCTAAGAGAGTTTAACTTGAAACAATACATG AAATAAAACCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTAAGTGGTTTCTGAATGATCTCCGGAGGCTGGTGCGTTCGGACCTCGGCCAACCATAAA AAATGACGACGGCAGCTAGGCCAACTTTTGAACCTGCAAGAGGTGGGAGAGGAAAAGGAG AAGGTGATTTGAGCCAACTCTCCAAGCAATATTCAAGTAGAGACCTACCCTCTCATACGA AGATAAAATATAGACAGACCACTCAGGATGCCCCCGAAGAGGTTCGGAACCGCGACTTCA GGAGAGAGTTGGAAGAGAGAGAGAGAGCTGCTGCAAGAGAAAAAAATAGAGATAGGCCGA CCCGAGAACATACAACCTCCTCCTCGGTGTCAAAGAAGCCTCGGTTAGACCAGATTCCTG CCGCCAACCTCGACGCAGATGACCCTCTAACAGATGAGGAGGATGAAGATGAAGATTTTG AAGAGGAAAGTGATGATGATGATACCGCAGCTCTTCTTGCAGAGCTGGAAAAAATCAAGA AAGAGCGAGCTGAAGAGCAGGCCAGGAAGGAACAAGAACAGAAGGCTGAAGAAGAAAGGA TTCGTATGGAAAACATTCTGAGTGGAAACCCTCTCCTTAACCTCACTGGCCCATCCCAGC CTCAGTCCAACTTCAAAGTTAAAAGAAGGTGGGATGATGACGTTGTTTTCAAGAACTGTG CAAAAGGTGTAGATGATCAGAAGAAAGACAAGAGATTTGTAAATGATACGCTACGATCTG AATTTCACAAAAAGTTCATGGAGAAATATATTAAATAGTACAGTTTTATGTGCTTAATTA AAGGCTGTAAAATGTAAACCATCTGACTTTATTTCGGTAGGTTTGTTTTTCTCCCCCTGC CTCCCAATCTAAATTGTGTATAGGCTTCCCTAATTTTAAGTTCCAAAATGTCTTTCCCTT TAACGATTCTTTATTCAGTGAAGACTTGGGAATTGGTTTCACCCAGTTTTCATCTCTGAC TATTTCCAGTCATGTCATTTATTTTGAATATGGGAAAGGGAATCTGCTTGTAATAAATAT TTTTAATAATCTAAATAGCCAAATCTGTGTCCCAACTTTTTGTTGAAATGTATGCAGCTT ATAAAACGTTGTGTATTTTCTTTTGTGTATTGCATTTCTTTGCGAATTAACCTTTCCTCC TCATTTTTCTAACTTTGATTTAAAGTCAGTTAATTCATGGTTTCTTTTCTGTGTCTTGAA GAGTGTGGTGAAAGATTAAAGGGATTCCAAGTTGGACCAACATGTTGCTATGGAGGAGTG TGGTCAAGCAGGAAGTACCCCGAGTGTGTGTGTCTGAGGGAGCGTGGGTACCTCTCACTT CTGCAGATGCTCCTTTCTTGTCTCTCAGCCCAGGAGCTCCTTAAGCATGCCAAGGAAGCT TGTGCCGATCACCTGTGTTCTAGATACTCCCCTGGCATGTTTCTCTTAAATGACATAGAG TTGCATACTGGCACTCATTCGCTGCAAAGCCTAAGAGAGTTTAACTTGAAACAATACATG AAATAAAACCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 396-515, + strand, RNAz p=0.92215 | |
| 420-515, - strand, RNAz p=0.525321 | |
| 822-940, - strand, RNAz p=0.594876 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 396-515, + strand, RNAz p=0.92215 | |
| 420-515, - strand, RNAz p=0.525321 | |
| 822-940, - strand, RNAz p=0.594876 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 6-545, gnl|bosTau2|chr18 (41014869-41014330) | |
| 6-545, gnl|Hg17|chr11 (94346357-94339190) | |
| 6-545, gnl|Mm7|chr9 (14336260-14342240) | |
| 52-193, gnl|bosTau2|chr15 (213432-213573) | |
| 52-193, gnl|canFam2|chr21 (9038227-9038068) | |
| 52-193, gnl|danRer3|chr5 (15524974-15524817) | |
| 52-193, gnl|dasNov1|scaffold_67709 (5822-5663) | |
| 52-193, gnl|echTel1|scaffold_105545 (2516-2353) | |
| 52-193, gnl|fr1|chrUn (49741614-49741453) | |
| 52-193, gnl|galGal2|chr1 (177281298-177281143) | |
| 52-193, gnl|hg17|chr11 (94344865-94345024) | |
| 52-193, gnl|Hg17|chr11 (94345008-94344867) | |
| 52-193, gnl|loxAfr1|scaffold_30060 (16454-16613) | |
| 52-193, gnl|mm7|chr9 (14336412-14336265) | |
| 52-193, gnl|Mm7|chr9 (14336267-14336408) | |
| 52-193, gnl|monDom2|scaffold_15 (2471294-2471135) | |
| 52-193, gnl|oryCun1|scaffold_179441 (45478-45632) | |
| 52-193, gnl|panTro1|chr9 (96266205-96266364) | |
| 52-193, gnl|rheMac2|chr14 (93508099-93508258) | |
| 52-193, gnl|rn3|chr8 (11249693-11249546) | |
| 52-193, gnl|tetNig1|chr7 (5236742-5236883) | |
| 52-193, gnl|xenTro1|scaffold_123 (2014395-2014560) | |
| 396-515, gnl|bosTau2|chr15 (216387-216506) | |
| 396-515, gnl|canFam2|chr21 (9042339-9042208) | |
| 396-515, gnl|danRer3|chr5 (15526607-15526483) | |
| 396-515, gnl|dasNov1|scaffold_16995 (81576-81466) | |
| 396-515, gnl|echTel1|scaffold_105545 (5704-5579) | |
| 396-515, gnl|fr1|chrUn (49742256-49742137) | |
| 396-515, gnl|galGal2|chr1 (177285584-177285464) | |
| 396-515, gnl|hg17|chr11 (94342786-94342911) | |
| 396-515, gnl|Hg17|chr11 (94342910-94342795) | |
| 396-515, gnl|loxAfr1|scaffold_30060 (13230-13356) | |
| 396-515, gnl|mm7|chr9 (14339303-14339186) | |
| 396-515, gnl|Mm7|chr9 (14339187-14339297) | |
| 396-515, gnl|monDom2|scaffold_15 (2481681-2481570) | |
| 396-515, gnl|oryCun1|scaffold_179441 (42908-43033) | |
| 396-515, gnl|panTro1|chr9 (96264125-96264250) | |
| 396-515, gnl|rheMac2|chr14 (93505709-93505834) | |
| 396-515, gnl|rn3|chr8 (11252192-11252075) | |
| 396-515, gnl|tetNig1|chr7 (5236097-5236215) | |
| 396-515, gnl|xenTro1|scaffold_123 (2008891-2009005) | |
| 627-1512, gnl|bosTau2|chr15 (220530-221390) | |
| 627-1512, gnl|Hg17|chr11 (94336329-94335444) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-545, gnl|bosTau2|chr18 (41014869-41014330) | |
| 6-545, gnl|Hg17|chr11 (94346357-94339190) | |
| 6-545, gnl|Mm7|chr9 (14336260-14342240) | |
| 52-193, gnl|bosTau2|chr15 (213432-213573) | |
| 52-193, gnl|canFam2|chr21 (9038227-9038068) | |
| 52-193, gnl|danRer3|chr5 (15524974-15524817) | |
| 52-193, gnl|dasNov1|scaffold_67709 (5822-5663) | |
| 52-193, gnl|echTel1|scaffold_105545 (2516-2353) | |
| 52-193, gnl|fr1|chrUn (49741614-49741453) | |
| 52-193, gnl|galGal2|chr1 (177281298-177281143) | |
| 52-193, gnl|hg17|chr11 (94344865-94345024) | |
| 52-193, gnl|Hg17|chr11 (94345008-94344867) | |
| 52-193, gnl|loxAfr1|scaffold_30060 (16454-16613) | |
| 52-193, gnl|mm7|chr9 (14336412-14336265) | |
| 52-193, gnl|Mm7|chr9 (14336267-14336408) | |
| 52-193, gnl|monDom2|scaffold_15 (2471294-2471135) | |
| 52-193, gnl|oryCun1|scaffold_179441 (45478-45632) | |
| 52-193, gnl|panTro1|chr9 (96266205-96266364) | |
| 52-193, gnl|rheMac2|chr14 (93508099-93508258) | |
| 52-193, gnl|rn3|chr8 (11249693-11249546) | |
| 52-193, gnl|tetNig1|chr7 (5236742-5236883) | |
| 52-193, gnl|xenTro1|scaffold_123 (2014395-2014560) | |
| 396-515, gnl|bosTau2|chr15 (216387-216506) | |
| 396-515, gnl|canFam2|chr21 (9042339-9042208) | |
| 396-515, gnl|danRer3|chr5 (15526607-15526483) | |
| 396-515, gnl|dasNov1|scaffold_16995 (81576-81466) | |
| 396-515, gnl|echTel1|scaffold_105545 (5704-5579) | |
| 396-515, gnl|fr1|chrUn (49742256-49742137) | |
| 396-515, gnl|galGal2|chr1 (177285584-177285464) | |
| 396-515, gnl|hg17|chr11 (94342786-94342911) | |
| 396-515, gnl|Hg17|chr11 (94342910-94342795) | |
| 396-515, gnl|loxAfr1|scaffold_30060 (13230-13356) | |
| 396-515, gnl|mm7|chr9 (14339303-14339186) | |
| 396-515, gnl|Mm7|chr9 (14339187-14339297) | |
| 396-515, gnl|monDom2|scaffold_15 (2481681-2481570) | |
| 396-515, gnl|oryCun1|scaffold_179441 (42908-43033) | |
| 396-515, gnl|panTro1|chr9 (96264125-96264250) | |
| 396-515, gnl|rheMac2|chr14 (93505709-93505834) | |
| 396-515, gnl|rn3|chr8 (11252192-11252075) | |
| 396-515, gnl|tetNig1|chr7 (5236097-5236215) | |
| 396-515, gnl|xenTro1|scaffold_123 (2008891-2009005) | |
| 627-1512, gnl|bosTau2|chr15 (220530-221390) | |
| 627-1512, gnl|Hg17|chr11 (94336329-94335444) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| vin (0.665115) | |
| ret (0.514933) | |
| tbr (0.462535) | |
| ece (0.45861) | |
| lin (0.436808) | |
| spl (0.429553) | |
| fcc (0.39557) | |
| fty (0.351679) | |
| cki (0.330469) | |
| isp (0.300752) | |
| fce (0.271592) | |
| kid (0.259471) | |
| bla (0.248694) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| tra (0.123092) | |
| eep (0.122564) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.665115) | |
| ret (0.514933) | |
| tbr (0.462535) | |
| ece (0.45861) | |
| lin (0.436808) | |
| spl (0.429553) | |
| fcc (0.39557) | |
| fty (0.351679) | |
| cki (0.330469) | |
| isp (0.300752) | |
| fce (0.271592) | |
| kid (0.259471) | |
| bla (0.248694) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| tra (0.123092) | |
| eep (0.122564) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |