Ss1.1-Pig4-TMW8033D18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTTTTAAAGATAAAGTAGATGTAGCCTCAGTAATAGTGACAAAACTTGATGGCCATGC AAAAGGAGGTGGTGCACTCAGTGCAGTTGCTGCCACAAAAAGTCCAATTATTTTCATTGG TACAGGGGAACATATAGATGACTTTGAACCTTTCAAAACACAGCCTTTCATCAGCAAACT TCTTGGTATGGGTGACATTGAAGGACTGATAGATAAAGTCAACGAGTTGAAGTTGGATGA CAATGAAGCACTTATAGAGAAGTTGAAACATGGTCAGTTTACGTTGCGAGACATGTATGA ACAATTTCAAAATATCATGAAAATGGGCCCCTTCAGTCAGATCTTGGGGATGATCCCTGG TTTTGGAACAGATTTCATGAGCAAAGGAAACGAACAAGAGTCAATGGCAAGGCTAAAGAA ATTAATGACAATAATGGATAGTATGAACGATCAAGAACTTGACAGTACTGATGGTGCCAA GGTTTTTAGTAAGCAACCAGGAAGAATCCAAAGAGTAGCAAGAGGATCAGGTGTATCAAC GAGAGATGTTCAAGAACTTCTGACACAATATACCAAATTTGCACAGATGGTAAAAAAGAT GGGAGGCATCAAAGGACTTTTCAAAGGTGGTGACATGTCTAAGAATGTAAGCCAGTCGCA GATGGCAAAGTTGAATCAACAAATGGCCAAAATGATGGATCCAAGAGTTCTTCATCACAT GGGTGGTATGGCAGGACTTCAGTCAATGATGAGGCAGTTCCAGCAGGGTGCAGCTGGCAA TATGAAAGGCATGATGGGATTCAATAACATGTAAAGAAGATGCCTTAATATAAATTGACT CAGTTGATTACACTATTTGCTGAGACCTCACAGAGTTTCCCTCCTTTTTGCAAACGGGGA AAAAAGTATTTTTCTTGCCTGTCTTGCCCTTTTTCTCTCTCTTCTCATCTTTTTTCCTCT TCTTTTCTTCCTTCTTCTTTCCTTCTCTCCCTTTGATATAAGGGAGAAATATATGGTTTT TGTGGAAATCATTATATTTTTGCTTTAGATTTTCTTCTCAGTTTTCAACCATCATAACAC TTCCTAAGTTAAACAAATCATGATGTAAAATTTTAGTACTTAAAAGTTTTTAATTGTCTC AAAGGCCAAGAATTACATTTGTAAACAGTCCTGGTCAGTGGTTACATGATGTCTCAATAA AAGTGCTGTAAAATAAACTTCAAAGTCGTTTTAAGTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTTTTAAAGATAAAGTAGATGTAGCCTCAGTAATAGTGACAAAACTTGATGGCCATGC AAAAGGAGGTGGTGCACTCAGTGCAGTTGCTGCCACAAAAAGTCCAATTATTTTCATTGG TACAGGGGAACATATAGATGACTTTGAACCTTTCAAAACACAGCCTTTCATCAGCAAACT TCTTGGTATGGGTGACATTGAAGGACTGATAGATAAAGTCAACGAGTTGAAGTTGGATGA CAATGAAGCACTTATAGAGAAGTTGAAACATGGTCAGTTTACGTTGCGAGACATGTATGA ACAATTTCAAAATATCATGAAAATGGGCCCCTTCAGTCAGATCTTGGGGATGATCCCTGG TTTTGGAACAGATTTCATGAGCAAAGGAAACGAACAAGAGTCAATGGCAAGGCTAAAGAA ATTAATGACAATAATGGATAGTATGAACGATCAAGAACTTGACAGTACTGATGGTGCCAA GGTTTTTAGTAAGCAACCAGGAAGAATCCAAAGAGTAGCAAGAGGATCAGGTGTATCAAC GAGAGATGTTCAAGAACTTCTGACACAATATACCAAATTTGCACAGATGGTAAAAAAGAT GGGAGGCATCAAAGGACTTTTCAAAGGTGGTGACATGTCTAAGAATGTAAGCCAGTCGCA GATGGCAAAGTTGAATCAACAAATGGCCAAAATGATGGATCCAAGAGTTCTTCATCACAT GGGTGGTATGGCAGGACTTCAGTCAATGATGAGGCAGTTCCAGCAGGGTGCAGCTGGCAA TATGAAAGGCATGATGGGATTCAATAACATGTAAAGAAGATGCCTTAATATAAATTGACT CAGTTGATTACACTATTTGCTGAGACCTCACAGAGTTTCCCTCCTTTTTGCAAACGGGGA AAAAAGTATTTTTCTTGCCTGTCTTGCCCTTTTTCTCTCTCTTCTCATCTTTTTTCCTCT TCTTTTCTTCCTTCTTCTTTCCTTCTCTCCCTTTGATATAAGGGAGAAATATATGGTTTT TGTGGAAATCATTATATTTTTGCTTTAGATTTTCTTCTCAGTTTTCAACCATCATAACAC TTCCTAAGTTAAACAAATCATGATGTAAAATTTTAGTACTTAAAAGTTTTTAATTGTCTC AAAGGCCAAGAATTACATTTGTAAACAGTCCTGGTCAGTGGTTACATGATGTCTCAATAA AAGTGCTGTAAAATAAACTTCAAAGTCGTTTTAAGTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 957-1068, - strand, RNAz p=0.952478 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 957-1068, - strand, RNAz p=0.952478 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 85-190, gnl|bosTau2|chr21 (29788563-29788668) | |
| 85-190, gnl|Hg17|chr14 (34552759-34552864) | |
| 85-190, gnl|Mm7|chr12 (53070175-53070280) | |
| 454-628, gnl|bosTau2|chr21 (29796965-29797139) | |
| 454-628, gnl|canFam2|chr8 (16837204-16837386) | |
| 454-628, gnl|danRer3|chr17 (5585852-5586035) | |
| 454-628, gnl|dasNov1|scaffold_11095 (39965-39783) | |
| 454-628, gnl|echTel1|scaffold_284756 (11024-10842) | |
| 454-628, gnl|fr1|chrUn (93265906-93266087) | |
| 454-628, gnl|galGal2|chr5 (32959875-32960057) | |
| 454-628, gnl|hg17|chr14 (34561866-34562048) | |
| 454-628, gnl|Hg17|chr14 (34561865-34562039) | |
| 454-628, gnl|mm7|chr12 (53076853-53077033) | |
| 454-628, gnl|Mm7|chr12 (53076852-53077026) | |
| 454-628, gnl|monDom2|scaffold_73 (3261948-3261766) | |
| 454-628, gnl|oryCun1|scaffold_201112 (24461-24630) | |
| 454-628, gnl|panTro1|chr15 (33718673-33718855) | |
| 454-628, gnl|rheMac2|chr7 (97983016-97983198) | |
| 454-628, gnl|rn3|chr6 (75491677-75491859) | |
| 454-628, gnl|tetNig1|chrUn_random (82989209-82989033) | |
| 454-628, gnl|xenTro1|scaffold_117 (839978-839797) | |
| 722-1239, gnl|bosTau2|chr21 (29801008-29801531) | |
| 722-1239, gnl|Hg17|chr14 (34568017-34568524) | |
| 722-1239, gnl|Mm7|chr12 (53081151-53081631) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-190, gnl|bosTau2|chr21 (29788563-29788668) | |
| 85-190, gnl|Hg17|chr14 (34552759-34552864) | |
| 85-190, gnl|Mm7|chr12 (53070175-53070280) | |
| 454-628, gnl|bosTau2|chr21 (29796965-29797139) | |
| 454-628, gnl|canFam2|chr8 (16837204-16837386) | |
| 454-628, gnl|danRer3|chr17 (5585852-5586035) | |
| 454-628, gnl|dasNov1|scaffold_11095 (39965-39783) | |
| 454-628, gnl|echTel1|scaffold_284756 (11024-10842) | |
| 454-628, gnl|fr1|chrUn (93265906-93266087) | |
| 454-628, gnl|galGal2|chr5 (32959875-32960057) | |
| 454-628, gnl|hg17|chr14 (34561866-34562048) | |
| 454-628, gnl|Hg17|chr14 (34561865-34562039) | |
| 454-628, gnl|mm7|chr12 (53076853-53077033) | |
| 454-628, gnl|Mm7|chr12 (53076852-53077026) | |
| 454-628, gnl|monDom2|scaffold_73 (3261948-3261766) | |
| 454-628, gnl|oryCun1|scaffold_201112 (24461-24630) | |
| 454-628, gnl|panTro1|chr15 (33718673-33718855) | |
| 454-628, gnl|rheMac2|chr7 (97983016-97983198) | |
| 454-628, gnl|rn3|chr6 (75491677-75491859) | |
| 454-628, gnl|tetNig1|chrUn_random (82989209-82989033) | |
| 454-628, gnl|xenTro1|scaffold_117 (839978-839797) | |
| 722-1239, gnl|bosTau2|chr21 (29801008-29801531) | |
| 722-1239, gnl|Hg17|chr14 (34568017-34568524) | |
| 722-1239, gnl|Mm7|chr12 (53081151-53081631) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| sme (0.305437) | |
| tes (0.207814) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| sug (0.127291) | |
| eru (0.120048) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| tes (0.207814) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| sug (0.127291) | |
| eru (0.120048) | |
| jca (0.11396) | |
| jej (0.0989218) |