Non-Coding RNA Search

Ss1.1-Pig4-TMW8033D21.3

Sequence:


               
               TGCTTGTCGCTTTCTCAGTGTGTGTCCATGCCCGCTGCTGGTGCCAGGTTGGGCGCCCAT
GCTGTACACCCAGCCTAGATGCCAGCCATGTCTTGCAGGGGCGTGTGTGTAACTGTAGTG
TAGTCAGGTGCTCAATGGAGAATATAAAAATAAGAAACATATACAGAAAAATTAATATAT
ATTTTAAGTTTAAAAAACAGAAAAGCAGACAAAACAATTCCCATCAGGTAGTTGTCCAAC
CCCCAGCTGGGTCTGATCTTTCTCATCACCCACCCGACCTGGCTACCCCCTCACCTCGGG
CTCGGGGGATCTGTGGGGGACTAGGGGGCCATTTCCTTTTATCTGCCCTTTTTTTTTGGT
TGTTGTATTTTGTACAGACAAGTCAGAAAAACAACAGTGACAAAAAAGTCAAGAAAACTT
TGTAAAATATTGTGTGTGTGATTCCTTGTAAAATATTTTCAAATGGTTTATTACAGAAGA
TCAGTTATTAAATAATGTTCATATTTTCACTTCAAATGGTTCCCATCCACTATGTGTGCC
TCTGACTGTGGATTGGGTGGCTTGAAGACATGACCTCAGAGCCACACTGACCACTCAACT
GGGAGTGAAGGCCATAGCAATCCAGTGGGTGGAGGGCATGATGCTTCCCAGGCCTCCTAG
GTGGCAGAATCTTTTGTCTTGTGTAATGTTTTCGAAAGCCTCCAGGAAACAGTCTTTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTTGTCGCTTTCTCAGTGTGTGTCCATGCCCGCTGCTGGTGCCAGGTTGGGCGCCCAT
GCTGTACACCCAGCCTAGATGCCAGCCATGTCTTGCAGGGGCGTGTGTGTAACTGTAGTG
TAGTCAGGTGCTCAATGGAGAATATAAAAATAAGAAACATATACAGAAAAATTAATATAT
ATTTTAAGTTTAAAAAACAGAAAAGCAGACAAAACAATTCCCATCAGGTAGTTGTCCAAC
CCCCAGCTGGGTCTGATCTTTCTCATCACCCACCCGACCTGGCTACCCCCTCACCTCGGG
CTCGGGGGATCTGTGGGGGACTAGGGGGCCATTTCCTTTTATCTGCCCTTTTTTTTTGGT
TGTTGTATTTTGTACAGACAAGTCAGAAAAACAACAGTGACAAAAAAGTCAAGAAAACTT
TGTAAAATATTGTGTGTGTGATTCCTTGTAAAATATTTTCAAATGGTTTATTACAGAAGA
TCAGTTATTAAATAATGTTCATATTTTCACTTCAAATGGTTCCCATCCACTATGTGTGCC
TCTGACTGTGGATTGGGTGGCTTGAAGACATGACCTCAGAGCCACACTGACCACTCAACT
GGGAGTGAAGGCCATAGCAATCCAGTGGGTGGAGGGCATGATGCTTCCCAGGCCTCCTAG
GTGGCAGAATCTTTTGTCTTGTGTAATGTTTTCGAAAGCCTCCAGGAAACAGTCTTTAAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               24-142, - strand, RNAz p=0.616257
               

               
               173-331, - strand, RNAz p=0.98647

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               24-142, - strand, RNAz p=0.616257
               

               
               173-331, - strand, RNAz p=0.98647

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               214-324, - strand, RNAmicro p=0.985554

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               214-324, - strand, RNAmicro p=0.985554

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-719, gnl|bosTau2|chr22 (38637002-38636288)
               

               
               24-719, gnl|Hg17|chr3 (50375693-50374712)
               

               
               24-719, gnl|Mm7|chr9 (107258306-107259010)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-719, gnl|bosTau2|chr22 (38637002-38636288)
               

               
               24-719, gnl|Hg17|chr3 (50375693-50374712)
               

               
               24-719, gnl|Mm7|chr9 (107258306-107259010)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)

	24-142, - strand, RNAz p=0.616257
	173-331, - strand, RNAz p=0.98647

	24-719, gnl\|bosTau2\|chr22 (38637002-38636288)
	24-719, gnl\|Hg17\|chr3 (50375693-50374712)
	24-719, gnl\|Mm7\|chr9 (107258306-107259010)

	fce (0.271592)
	fbs (0.175346)
	rec (0.17307)
	fhi (0.169578)
	ebs (0.118301)