Non-Coding RNA Search

Ss1.1-Pig4-TMW8033D24.5

Sequence:


               
               CAGCAGATTGATAATGAAACACCACATTTTGGTGTGAAAACCCTGGTTTGCTTAAGAATA
GAAGTAATTTCTGTCTGTGGAGGCAACAAGTAAAAAGAAAAATTAACAGCTTGATTTGAG
TAGCCAACAGGAAAGGCTCCTTTCACATTTACATTAAAACTATTCTGTAGTTACTAATGT
ACCATCATTTAAATTCTCAAAGGTATAGAAGATAAAGCAGTGCCATTTGTTGCTGTGGTC
TATTCTCAAATGCATGGACAATGTCCCCCCCTTTTTAAAATAACTGCTTGTATCTGGGAT
GCAAGCTATACTTACCTTTTTAAATACATTTTTAAAGTATTTATTAATGAACCAAAGGAA
ATCCGATGCTTTCTATAAGCATCAGAATATATAATACATAGTGATTTGACTATGAATTTT
AAATCCACATTTTAATATTAGTGGGGTATTGCAAAGACATTCCTTCTAAAGTTTTAATAT
TCCTTTAATAAGGGTCTCAGGGAGGGTAAATTAGCCATATTTATTTTCCAGAGATGTAAG
GAATTGCTAAGTTTTTTAATTAACTTTTTAAAAGAAATTTAAATGCCACCAAACTCATGT
GGGTTGCACTGCTTTTGGAACCAATAAGTGTTGGTATGCACTTTGTTCAGAAACACTGTG
TACTTTTTTCAAAATTAGTTTCATGTAAAGTGATTGGACCCCTAGATTAGTGGAAAAAGC
TGATTAACCAGCTACTCAGAGGCTGCTAATTAATTCATTGCCAATGTCTTGGTTTTTTAG
TTTTGCCTCCGTGATAATAAAAGAGTGGAGAGGGGTGAAGTGAGGGAGGTTGCTGATTTG
GTAGAAACTGCAGCCCACAGAGGGACTGCTCTCGCCAATGCGGTGTCATCGGGCCCGCCC
TTTAGCTGCTGTTGTGTATTCTGTTACGGTAGTGAGGTGGTGTAGGTACTTTAGACTTTT
AATTTCCGAAGTTGATGACATCCCTCAGGCATGTATTCTGGAAATGGAATTCCTGTAACT
TCCTGCATTTGCAGTTTGCCCTACAATTAGTAGGCAGCATGTAAAACACTAGTGTAGATG
ATAAAGATATATATTCAAAGAGGACCAGAAATACTTGGTATTCAGCGGCACAGTAAGCAG
GTTATAAAAACGAAACAAAAGCACAGTGTTAACGCTTGCAAGTTTCCATTTGTTTTAATA
CTACGCAATCTTCCACATTCAGGCGTGTGCATGTGCACACGCACACAAAGACCTTAATTG
ACCTGCTCTGCTTGAGTCATGAAGTTCAAAAAAAAAAAAAAGTAAAGACATCTTGACACC
CACAAAATAATTGAAAAATTTCAGTTTCAATCGGGATATTTAAAACATTGGCAGAAGCTT
CTGTGAGTTTAGTTCCACTAAGATGTTTCACCTGCCTTATCAAGACCATTCTCAGTCTAC
TTTTTTAAGCTACCGTATCTTAAATTATTGAAAATTTATTAATTGCTGAATATATAATAA
CCTTTGCTTGTATGTAACCGAAAATGGTTTAAGAGCCAACATTTAGAGTATGACAATGGA
GCTGAACAGTTTTTAATGCGCAAGCAGTTCTGTTCTTGTGTATGACTTGTAACCTTAATT
TACTGTGTAAAGATGGTTACATTATTTCCTTAGCTTTGTTTGTTGGAGACAAATAGAGAA
TGCTTGTTAAGTATGTCAAAACATAATCTTGTGAATTTTTTGTTACTGTATTATACGAGC
TATATTTTTCATTTGCCCAGAAAGACAGCTTGTATAACGCTTTTGGAAGTTTCTGCTCTG
TAATGTCTTTAGAGCTGACAGTCTGTTAGGTTTGTTTTTTTCTTCATGCTAAAGTGTCAG
TTGGTGGTTTTGTGAACTGGTCAGAAATTCACAGGTCTTAAATGTTTGGGGGAAATTTAT
ATTGGACACTGCTCTTTGTCTAGCAAATAAAAGATGTTAATATATTCCTGTTACTGGCAT
GTGCACGACTATGTTATTAGAAGCCACTTTATCGTTTTCCTGCTTTAAATAGAAATGTCT
ATTTATGAATTCTGCTTGTAGTTTTTTCACAAATAAAATAGTAAAATTTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAGATTGATAATGAAACACCACATTTTGGTGTGAAAACCCTGGTTTGCTTAAGAATA
GAAGTAATTTCTGTCTGTGGAGGCAACAAGTAAAAAGAAAAATTAACAGCTTGATTTGAG
TAGCCAACAGGAAAGGCTCCTTTCACATTTACATTAAAACTATTCTGTAGTTACTAATGT
ACCATCATTTAAATTCTCAAAGGTATAGAAGATAAAGCAGTGCCATTTGTTGCTGTGGTC
TATTCTCAAATGCATGGACAATGTCCCCCCCTTTTTAAAATAACTGCTTGTATCTGGGAT
GCAAGCTATACTTACCTTTTTAAATACATTTTTAAAGTATTTATTAATGAACCAAAGGAA
ATCCGATGCTTTCTATAAGCATCAGAATATATAATACATAGTGATTTGACTATGAATTTT
AAATCCACATTTTAATATTAGTGGGGTATTGCAAAGACATTCCTTCTAAAGTTTTAATAT
TCCTTTAATAAGGGTCTCAGGGAGGGTAAATTAGCCATATTTATTTTCCAGAGATGTAAG
GAATTGCTAAGTTTTTTAATTAACTTTTTAAAAGAAATTTAAATGCCACCAAACTCATGT
GGGTTGCACTGCTTTTGGAACCAATAAGTGTTGGTATGCACTTTGTTCAGAAACACTGTG
TACTTTTTTCAAAATTAGTTTCATGTAAAGTGATTGGACCCCTAGATTAGTGGAAAAAGC
TGATTAACCAGCTACTCAGAGGCTGCTAATTAATTCATTGCCAATGTCTTGGTTTTTTAG
TTTTGCCTCCGTGATAATAAAAGAGTGGAGAGGGGTGAAGTGAGGGAGGTTGCTGATTTG
GTAGAAACTGCAGCCCACAGAGGGACTGCTCTCGCCAATGCGGTGTCATCGGGCCCGCCC
TTTAGCTGCTGTTGTGTATTCTGTTACGGTAGTGAGGTGGTGTAGGTACTTTAGACTTTT
AATTTCCGAAGTTGATGACATCCCTCAGGCATGTATTCTGGAAATGGAATTCCTGTAACT
TCCTGCATTTGCAGTTTGCCCTACAATTAGTAGGCAGCATGTAAAACACTAGTGTAGATG
ATAAAGATATATATTCAAAGAGGACCAGAAATACTTGGTATTCAGCGGCACAGTAAGCAG
GTTATAAAAACGAAACAAAAGCACAGTGTTAACGCTTGCAAGTTTCCATTTGTTTTAATA
CTACGCAATCTTCCACATTCAGGCGTGTGCATGTGCACACGCACACAAAGACCTTAATTG
ACCTGCTCTGCTTGAGTCATGAAGTTCAAAAAAAAAAAAAAGTAAAGACATCTTGACACC
CACAAAATAATTGAAAAATTTCAGTTTCAATCGGGATATTTAAAACATTGGCAGAAGCTT
CTGTGAGTTTAGTTCCACTAAGATGTTTCACCTGCCTTATCAAGACCATTCTCAGTCTAC
TTTTTTAAGCTACCGTATCTTAAATTATTGAAAATTTATTAATTGCTGAATATATAATAA
CCTTTGCTTGTATGTAACCGAAAATGGTTTAAGAGCCAACATTTAGAGTATGACAATGGA
GCTGAACAGTTTTTAATGCGCAAGCAGTTCTGTTCTTGTGTATGACTTGTAACCTTAATT
TACTGTGTAAAGATGGTTACATTATTTCCTTAGCTTTGTTTGTTGGAGACAAATAGAGAA
TGCTTGTTAAGTATGTCAAAACATAATCTTGTGAATTTTTTGTTACTGTATTATACGAGC
TATATTTTTCATTTGCCCAGAAAGACAGCTTGTATAACGCTTTTGGAAGTTTCTGCTCTG
TAATGTCTTTAGAGCTGACAGTCTGTTAGGTTTGTTTTTTTCTTCATGCTAAAGTGTCAG
TTGGTGGTTTTGTGAACTGGTCAGAAATTCACAGGTCTTAAATGTTTGGGGGAAATTTAT
ATTGGACACTGCTCTTTGTCTAGCAAATAAAAGATGTTAATATATTCCTGTTACTGGCAT
GTGCACGACTATGTTATTAGAAGCCACTTTATCGTTTTCCTGCTTTAAATAGAAATGTCT
ATTTATGAATTCTGCTTGTAGTTTTTTCACAAATAAAATAGTAAAATTTAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               272-470, + strand, RNAz p=0.983307

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-470, + strand, RNAz p=0.983307

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-839, gnl|bosTau2|chr22 (20418227-20417380)
               

               
               1-839, gnl|Hg17|chr3 (72508551-72507711)
               

               
               1-839, gnl|Mm7|chr6 (100318659-100317848)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-839, gnl|bosTau2|chr22 (20418227-20417380)
               

               
               1-839, gnl|Hg17|chr3 (72508551-72507711)
               

               
               1-839, gnl|Mm7|chr6 (100318659-100317848)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               tra (0.61546)
               

               
               liv (0.585137)
               

               
               spl (0.429553)
               

               
               tes (0.415628)
               

               
               elu (0.385356)
               

               
               vin (0.332557)
               

               
               lun (0.300978)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               eru (0.240096)
               

               
               cty (0.20816)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.61546)
               

               
               liv (0.585137)
               

               
               spl (0.429553)
               

               
               tes (0.415628)
               

               
               elu (0.385356)
               

               
               vin (0.332557)
               

               
               lun (0.300978)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               eru (0.240096)
               

               
               cty (0.20816)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	1-839, gnl\|bosTau2\|chr22 (20418227-20417380)
	1-839, gnl\|Hg17\|chr3 (72508551-72507711)
	1-839, gnl\|Mm7\|chr6 (100318659-100317848)

	tra (0.61546)
	liv (0.585137)
	spl (0.429553)
	tes (0.415628)
	elu (0.385356)
	vin (0.332557)
	lun (0.300978)
	lin (0.291206)
	ova (0.258264)
	sug (0.254582)
	thg (0.253582)
	eru (0.240096)
	cty (0.20816)
	cmu (0.186393)
	fty (0.17584)
	sin (0.174948)
	nco (0.161734)
	fco (0.157208)
	ski (0.146735)
	cst (0.140036)
	pla (0.133672)
	cov (0.132153)
	ret (0.128733)
	bla (0.124347)
	ecc (0.115035)
	spc (0.113366)
	jej (0.0989218)