Non-Coding RNA Search

Ss1.1-Pig4-TMW8033E06.3

Sequence:


               
               CCTCAACTCCAGGATTGAGGCCTTAACCTCCCGGGCATCCTTGGATTCTCCAGATGGCCC
TTGGTTAGGGTCCTGCCTTTCCTCTGGATTCTACAAAAGCCAGCACTCCCACCATTAGGA
TTCATGCAGACGTGTCTGTACCTTGGGTGGGTGGGGTGAGGCCATCTCCTCCGCTGCCGC
TGTGCTGCCACTGTCATTCGTAGGGGATGTGGAGTGAGACTGGCATCTCGTGAAGTCGTG
CAATGGCCAGGGTTGTGCTTTCTAGCAAATATGCTGTTCTGTACAGGAACTACTGTGTGC
AAGGCGTTCATTTCAAAGCTAGGCATCGTGCTCTTCTGACGTTTGTGTCGCACAGCACTG
CTGTGACTTCTTCGTGACTTCGCTCAGATCTGGTTTCTGAGAGTTTGGGGGGCTAGCAGC
ACCACATGCAGCGTCTTACAAAGTGTCCAGGTGGCCAGAAGAGCTTGTCAGCCCCGGGGG
AGCAGAAGTGTGCTGGCCAGCAGTGAGTGCTGCTGCGTGCCAACAGAAGAGGCCTCCTTC
CCCTCGGCACCCAGGCATTATTAACGCAGGTCCTCTGTTGCACTATGATGCGGTTATAAT
GTCACGGGAAGAAAGCAGAAGCAGAGTCCAGCTTCCAAAAGGTGAGGACTCTGCTCAGTG
ACGTAGGTCAGGAATGTCTTCCTAGGCTGGAAGAGCCAAAGAATATTCCATTTTCTTTTT
CTTGCAATTGAAAACCACACTGAGTGGAGACACATTTGAAGCCAGGTGATGCCCGGGCTT
TAGCATTATTAGATGTTAATGACATTGTTTCTGTCATGCAGATGTTTGTACAAATCTGGC
CCAGAGCATTTATAGCTGTGAGAAAGTCATTCACACTGGCCATGAGGACTCTGGCTACTG
TCTGTTTAAATTCTGATGTTTCTGTGAAATTCTCAGAGTGTTTAATCCTGCTCAATAGTA
TCATTACAATTTTCTGTAAGAGAAAATATTACTTATTTATCTTAGTATTCCTAACCTGTC
AATGTAATAAATATTGGAACCAAAACATGGTGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCAACTCCAGGATTGAGGCCTTAACCTCCCGGGCATCCTTGGATTCTCCAGATGGCCC
TTGGTTAGGGTCCTGCCTTTCCTCTGGATTCTACAAAAGCCAGCACTCCCACCATTAGGA
TTCATGCAGACGTGTCTGTACCTTGGGTGGGTGGGGTGAGGCCATCTCCTCCGCTGCCGC
TGTGCTGCCACTGTCATTCGTAGGGGATGTGGAGTGAGACTGGCATCTCGTGAAGTCGTG
CAATGGCCAGGGTTGTGCTTTCTAGCAAATATGCTGTTCTGTACAGGAACTACTGTGTGC
AAGGCGTTCATTTCAAAGCTAGGCATCGTGCTCTTCTGACGTTTGTGTCGCACAGCACTG
CTGTGACTTCTTCGTGACTTCGCTCAGATCTGGTTTCTGAGAGTTTGGGGGGCTAGCAGC
ACCACATGCAGCGTCTTACAAAGTGTCCAGGTGGCCAGAAGAGCTTGTCAGCCCCGGGGG
AGCAGAAGTGTGCTGGCCAGCAGTGAGTGCTGCTGCGTGCCAACAGAAGAGGCCTCCTTC
CCCTCGGCACCCAGGCATTATTAACGCAGGTCCTCTGTTGCACTATGATGCGGTTATAAT
GTCACGGGAAGAAAGCAGAAGCAGAGTCCAGCTTCCAAAAGGTGAGGACTCTGCTCAGTG
ACGTAGGTCAGGAATGTCTTCCTAGGCTGGAAGAGCCAAAGAATATTCCATTTTCTTTTT
CTTGCAATTGAAAACCACACTGAGTGGAGACACATTTGAAGCCAGGTGATGCCCGGGCTT
TAGCATTATTAGATGTTAATGACATTGTTTCTGTCATGCAGATGTTTGTACAAATCTGGC
CCAGAGCATTTATAGCTGTGAGAAAGTCATTCACACTGGCCATGAGGACTCTGGCTACTG
TCTGTTTAAATTCTGATGTTTCTGTGAAATTCTCAGAGTGTTTAATCCTGCTCAATAGTA
TCATTACAATTTTCTGTAAGAGAAAATATTACTTATTTATCTTAGTATTCCTAACCTGTC
AATGTAATAAATATTGGAACCAAAACATGGTGAACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-113, - strand, RNAz p=0.932965
               

               
               789-947, + strand, RNAz p=0.940593

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-113, - strand, RNAz p=0.932965
               

               
               789-947, + strand, RNAz p=0.940593

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001674, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001674, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1056, gnl|bosTau2|chr16 (53016363-53015321)
               

               
               1-1056, gnl|Hg17|chr1 (209181501-209182513)
               

               
               1-1056, gnl|Mm7|chr1 (190724780-190723800)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1056, gnl|bosTau2|chr16 (53016363-53015321)
               

               
               1-1056, gnl|Hg17|chr1 (209181501-209182513)
               

               
               1-1056, gnl|Mm7|chr1 (190724780-190723800)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ssp (0.406559)
               

               
               vin (0.332557)
               

               
               ova (0.258264)
               

               
               nms (0.213858)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               ste (0.135208)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.406559)
               

               
               vin (0.332557)
               

               
               ova (0.258264)
               

               
               nms (0.213858)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               ste (0.135208)
               

               
               eje (0.0988338)

	1-113, - strand, RNAz p=0.932965
	789-947, + strand, RNAz p=0.940593

	1-1056, gnl\|bosTau2\|chr16 (53016363-53015321)
	1-1056, gnl\|Hg17\|chr1 (209181501-209182513)
	1-1056, gnl\|Mm7\|chr1 (190724780-190723800)

	ssp (0.406559)
	vin (0.332557)
	ova (0.258264)
	nms (0.213858)
	ill (0.175593)
	sin (0.174948)
	rec (0.17307)
	cut (0.169924)
	cag (0.151194)
	isp (0.150376)
	ste (0.135208)
	eje (0.0988338)