Non-Coding RNA Search

Ss1.1-Pig4-TMW8033E09.3

Sequence:


               
               AGAGCCAGGACCTGCAGCTGTGTGTGAATGGCTGCCCCCTGGGCGAGCGCATCGATGACG
GGCAGGGCCAGGTGTCGGCCATCCTGGGGCACAGCCTGCCTCGCACCTCCTCAGCCCCGG
CCTGGCCTGGCTACACACTGGAGACTGCCAACGCTCAATGCCACGAGAAGATGCCAGTGA
AGGACATCTACTTCCAGTCCTGTGTCTTTGACCTGCTCACCACCGGTGATGCCAACTTCA
CCGCCGCAGCCCACAGTGCCTTGGAGGACGTGGCGGCGCTGCACCCAAGGAAGGAACGCT
GGCACATTTTCCCAAGCAGTGGCCACAGGGCGCCCCCTGGAGGCAGCCATCTCTCTCTCT
GTCTAGGACTCCTATGCTTGATGCTCAGTGTGTTTTTGTAGGAGTTGTCTTTTGTTTTTT
TTTTTATTTTTATTTTTGTCTATAACAAAGTTTAAAATATATATTGTCATAATATATTGA
GTAAAAGAGTATATATGTATATACCATGTATATGATAGGACGTTTGCCCTGAGACACCTG
CCTGATTGTACATACTGTGTTTGACTGTTTTCAAGTATGTTGGATGTAGTGTTCTTTGAT
TGTATCGATTTTTGTTTTGCAGTTTTGTGAAATGTTTTATAATGTCCCTGCCTGGGACCT
GTTAGAAAGCACTTTATTTTTTATATATTAAATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCCAGGACCTGCAGCTGTGTGTGAATGGCTGCCCCCTGGGCGAGCGCATCGATGACG
GGCAGGGCCAGGTGTCGGCCATCCTGGGGCACAGCCTGCCTCGCACCTCCTCAGCCCCGG
CCTGGCCTGGCTACACACTGGAGACTGCCAACGCTCAATGCCACGAGAAGATGCCAGTGA
AGGACATCTACTTCCAGTCCTGTGTCTTTGACCTGCTCACCACCGGTGATGCCAACTTCA
CCGCCGCAGCCCACAGTGCCTTGGAGGACGTGGCGGCGCTGCACCCAAGGAAGGAACGCT
GGCACATTTTCCCAAGCAGTGGCCACAGGGCGCCCCCTGGAGGCAGCCATCTCTCTCTCT
GTCTAGGACTCCTATGCTTGATGCTCAGTGTGTTTTTGTAGGAGTTGTCTTTTGTTTTTT
TTTTTATTTTTATTTTTGTCTATAACAAAGTTTAAAATATATATTGTCATAATATATTGA
GTAAAAGAGTATATATGTATATACCATGTATATGATAGGACGTTTGCCCTGAGACACCTG
CCTGATTGTACATACTGTGTTTGACTGTTTTCAAGTATGTTGGATGTAGTGTTCTTTGAT
TGTATCGATTTTTGTTTTGCAGTTTTGTGAAATGTTTTATAATGTCCCTGCCTGGGACCT
GTTAGAAAGCACTTTATTTTTTATATATTAAATATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, - strand, RNAz p=0.568645

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.568645

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr7 (60519859-60520580)
               

               
               1-696, gnl|Hg17|chr5 (98156957-98157649)
               

               
               1-696, gnl|Mm7|chr17 (14044312-14043610)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr7 (60519859-60520580)
               

               
               1-696, gnl|Hg17|chr5 (98156957-98157649)
               

               
               1-696, gnl|Mm7|chr17 (14044312-14043610)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sto (0.179824)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               ste (0.135208)
               

               
               ese (0.126502)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               ste (0.135208)
               

               
               ese (0.126502)

	1-696, gnl\|bosTau2\|chr7 (60519859-60520580)
	1-696, gnl\|Hg17\|chr5 (98156957-98157649)
	1-696, gnl\|Mm7\|chr17 (14044312-14043610)

	sto (0.179824)
	gul (0.177588)
	ill (0.175593)
	ste (0.135208)
	ese (0.126502)