Non-Coding RNA Search

Ss1.1-Pig4-TMW8033E11.3

Sequence:


               
               CAAACACAACATTTAGACAGTCATGGAGAGCCAACCATTACAAGTCTATATACAAATTGG
TATTTGGAAACTTTGTTAAGACAAGTCAGCAATGGTCATATAGCTTATTTCCCTGCAATG
AAGGCATTTGTGAACCTACCTACAGAAAATGAATTAACATTCAATGCAGAGGAATATTCT
GACATATCAGAAATGAGGTCGTTATCAGAACTACTAGGCCCATATGGTATGAAGTTCCTA
AGTGAAAGCCTTATGTGGCATATTTCATCACAAGTTGCTGAACTTAAGAAACTTGTGGTG
GAGAATGTTGATGTGCTAACACAAATGAGGACCAGCTTTGACAAACCCGACCAGATGGCT
GCACTCTTTAAAAGATTATCGTCTGTTGACAGTGTCTTGAAGAGGATGACAATAATTGGT
GTAATTTTATCTTTCCGATCATTGGCACAAGAAGCACTTAGAGATGTCTTGTCTTACCAC
ATTCCTTTTCTTGTAAGTTCAATTGAGGATTTCAAAGATCACATTCCAAGGGAAACTGAT
ATGAAGGTTGCAATGAATGTGTATGAATTATCATCAGCTGCTGGATTACCTTGTGAGATT
GATCCTGCTTTGGTAGTAGCTCTTTCTTCACAAAAATCAGAAAACATAAGTCCAGAAGAA
GAATATAAAATTGCCTGCCTCCTCATGGTCTTTGTGGCAGTTTCTTTGCCAACACTGGCC
AGTAATGTGATGTCTCAGTATAGCCCTGCTATAGAAGGGCACTGCAACAACATACATTGC
TTGGCCAAAGCCATCAACCAGATTGCCGCAGCTTTGTTTACAATTCACAAAGGAAGCATT
GAAGATCGGCTTAAAGAATTTCTGGCGCTTGCGTCCTCCAGTCTACTGAAAATTGGCCAG
GAGACAGATAAAACAACAACAAGAAATAGAGAATCTGTTTATTTACTGCTAGATATGATT
GTGCAAGAATCCCCATTCCTGACAATGGATCTTTTGGAATCTTGTTTTCCTTATGTCTTG
CTGAGAAATGCATACCATGCTGTCTACAAGCAAAGTGTTACATCTTCTGCATAAAACATC
TACTTATGAAGACAAGCACGCATTTTTGTTGCCTCAGTTTTACCTGTAAACAGTGGAACT
ATTTTACCTTAAGGCCTGAAAAACAGTTTTGTGGATTATAAATTACTTTCATACGGTTGT
ATTTTCTGATCATTGGTTTCTTATATGGTTGTACTTCCATATACTTGGTTGATTTAGGTT
GCACATTTGCTGAATTTACTGAAATTATTCCAATAATTTTAGAGTATCATTTGTTTAAAA
AACATACATTATCTCTATGTTTTTGATATTTGATAATGAAAAAAACTTTGCTTGTTTATT
TCTGAAAAAGAATTGTATTTAGTGATTATTTTAGGTAGTAATATTATAGCATTCATCTGT
GTGTAAATTATTTCATATAGGGAAGAGTTCTGACCTGTACCTATGGTTCTTATTGAAAAC
AAAACTGGATGTGCATTTCTGTGATGTTATGAATACATTTCTACTTTATTTTGAAACATT
GCCAAACTAATTACTGTAACACTGTATAACATTAAAAAATGTTTAAGGACTGCTTAGCAT
TAGAAGCAGACTATGTCCCAAAATTCTAAAACAGCAACAAAATTGTTGCTTGTATAAAGC
CTAGTGATAATTTTTAGACTAATTTCCATAGTGCCCTGTTGGCATTAGCACTACCGTTGT
ACCCCTGCTGTATAATAAACACCCTTAGACATTTATCAGCTCTTGATACAAATGTTAGTC
CCTAACCACTTTTTATATGTTTTAAATTTTTGAAATTCAAGTGTATCTGCCATAACATAA
AATAAACACTAGACTGTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACACAACATTTAGACAGTCATGGAGAGCCAACCATTACAAGTCTATATACAAATTGG
TATTTGGAAACTTTGTTAAGACAAGTCAGCAATGGTCATATAGCTTATTTCCCTGCAATG
AAGGCATTTGTGAACCTACCTACAGAAAATGAATTAACATTCAATGCAGAGGAATATTCT
GACATATCAGAAATGAGGTCGTTATCAGAACTACTAGGCCCATATGGTATGAAGTTCCTA
AGTGAAAGCCTTATGTGGCATATTTCATCACAAGTTGCTGAACTTAAGAAACTTGTGGTG
GAGAATGTTGATGTGCTAACACAAATGAGGACCAGCTTTGACAAACCCGACCAGATGGCT
GCACTCTTTAAAAGATTATCGTCTGTTGACAGTGTCTTGAAGAGGATGACAATAATTGGT
GTAATTTTATCTTTCCGATCATTGGCACAAGAAGCACTTAGAGATGTCTTGTCTTACCAC
ATTCCTTTTCTTGTAAGTTCAATTGAGGATTTCAAAGATCACATTCCAAGGGAAACTGAT
ATGAAGGTTGCAATGAATGTGTATGAATTATCATCAGCTGCTGGATTACCTTGTGAGATT
GATCCTGCTTTGGTAGTAGCTCTTTCTTCACAAAAATCAGAAAACATAAGTCCAGAAGAA
GAATATAAAATTGCCTGCCTCCTCATGGTCTTTGTGGCAGTTTCTTTGCCAACACTGGCC
AGTAATGTGATGTCTCAGTATAGCCCTGCTATAGAAGGGCACTGCAACAACATACATTGC
TTGGCCAAAGCCATCAACCAGATTGCCGCAGCTTTGTTTACAATTCACAAAGGAAGCATT
GAAGATCGGCTTAAAGAATTTCTGGCGCTTGCGTCCTCCAGTCTACTGAAAATTGGCCAG
GAGACAGATAAAACAACAACAAGAAATAGAGAATCTGTTTATTTACTGCTAGATATGATT
GTGCAAGAATCCCCATTCCTGACAATGGATCTTTTGGAATCTTGTTTTCCTTATGTCTTG
CTGAGAAATGCATACCATGCTGTCTACAAGCAAAGTGTTACATCTTCTGCATAAAACATC
TACTTATGAAGACAAGCACGCATTTTTGTTGCCTCAGTTTTACCTGTAAACAGTGGAACT
ATTTTACCTTAAGGCCTGAAAAACAGTTTTGTGGATTATAAATTACTTTCATACGGTTGT
ATTTTCTGATCATTGGTTTCTTATATGGTTGTACTTCCATATACTTGGTTGATTTAGGTT
GCACATTTGCTGAATTTACTGAAATTATTCCAATAATTTTAGAGTATCATTTGTTTAAAA
AACATACATTATCTCTATGTTTTTGATATTTGATAATGAAAAAAACTTTGCTTGTTTATT
TCTGAAAAAGAATTGTATTTAGTGATTATTTTAGGTAGTAATATTATAGCATTCATCTGT
GTGTAAATTATTTCATATAGGGAAGAGTTCTGACCTGTACCTATGGTTCTTATTGAAAAC
AAAACTGGATGTGCATTTCTGTGATGTTATGAATACATTTCTACTTTATTTTGAAACATT
GCCAAACTAATTACTGTAACACTGTATAACATTAAAAAATGTTTAAGGACTGCTTAGCAT
TAGAAGCAGACTATGTCCCAAAATTCTAAAACAGCAACAAAATTGTTGCTTGTATAAAGC
CTAGTGATAATTTTTAGACTAATTTCCATAGTGCCCTGTTGGCATTAGCACTACCGTTGT
ACCCCTGCTGTATAATAAACACCCTTAGACATTTATCAGCTCTTGATACAAATGTTAGTC
CCTAACCACTTTTTATATGTTTTAAATTTTTGAAATTCAAGTGTATCTGCCATAACATAA
AATAAACACTAGACTGTAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5U9E5_9SAUR

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5U9E5_9SAUR

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1319-1895, gnl|bosTau2|chr28 (32765008-32765585)
               

               
               1319-1895, gnl|Hg17|chr2 (183615690-183615121)
               

               
               1319-1895, gnl|Mm7|chr2 (80344765-80344235)
               


               
               1553-1875, gnl|bosTau2|chr17 (29308834-29308517)
               

               
               1553-1875, gnl|Hg17|chr2 (183615420-183615127)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1319-1895, gnl|bosTau2|chr28 (32765008-32765585)
               

               
               1319-1895, gnl|Hg17|chr2 (183615690-183615121)
               

               
               1319-1895, gnl|Mm7|chr2 (80344765-80344235)
               


               
               1553-1875, gnl|bosTau2|chr17 (29308834-29308517)
               

               
               1553-1875, gnl|Hg17|chr2 (183615420-183615127)

Expressed library(ies): 34 entry(ies)

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Expressed library(ies): 34 entry(ies)

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               fco (1.8865)
               

               
               ret (1.28733)
               

               
               mgp (0.922722)
               

               
               kid (0.648677)
               

               
               bfe (0.599431)
               

               
               clu (0.598229)
               

               
               liv (0.438853)
               

               
               eye (0.341006)
               

               
               cty (0.31224)
               

               
               tbr (0.308356)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.8865)
               

               
               ret (1.28733)
               

               
               mgp (0.922722)
               

               
               kid (0.648677)
               

               
               bfe (0.599431)
               

               
               clu (0.598229)
               

               
               liv (0.438853)
               

               
               eye (0.341006)
               

               
               cty (0.31224)
               

               
               tbr (0.308356)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

	1319-1895, gnl\|bosTau2\|chr28 (32765008-32765585)
	1319-1895, gnl\|Hg17\|chr2 (183615690-183615121)
	1319-1895, gnl\|Mm7\|chr2 (80344765-80344235)

	1553-1875, gnl\|bosTau2\|chr17 (29308834-29308517)
	1553-1875, gnl\|Hg17\|chr2 (183615420-183615127)

	fco (1.8865)
	ret (1.28733)
	mgp (0.922722)
	kid (0.648677)
	bfe (0.599431)
	clu (0.598229)
	liv (0.438853)
	eye (0.341006)
	cty (0.31224)
	tbr (0.308356)
	lun (0.300978)
	fat (0.294855)
	cte (0.29274)
	lin (0.291206)
	fce (0.271592)
	ste (0.270416)
	tra (0.246184)
	ece (0.229305)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	mgm (0.180343)
	gul (0.177588)
	ton (0.1755)
	rec (0.17307)
	fhi (0.169578)
	mga (0.160205)
	ski (0.146735)
	hyp (0.142837)
	lnt (0.142308)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	ldo (0.0970026)