Non-Coding RNA Search

Ss1.1-Pig4-TMW8033E21.3

Sequence:


               
               GGCAAGCTCTAGGCCAGGTGCGGCTCCGATTCCTGGGCCGCTGTACACGGCCAAGTCCTG
CGTCTTCTTGTGATCCTTTTGATTTCCACCGGCGGGAGCCACTGTATCTGCACTCCTGGG
CTTTTCTTACATGCCTTTTCCTCAAAATGAGTGTCAGTATCACCTTCTTAAGACCTTTTA
CAAGAGTTTTGGTGCCATTCACCCTTCCTAGGAAGAGAAGGGTTTTATATACAACAATTC
TGCAGAGATACATGTCTTCCAAAATTCCAGCTGTGTCTAATCCTAGTAAGGAGAGTACAT
CATCTTCTGAACAGCTGGAGTTGGATGGGTGGAAAATCACAATGAAATCTAGTGTACAAG
AAGAGGGTGTTTCAACATTCTCAAGTAACAAGGATGAAGATCCTCTAGCTGCCACCAGGG
AGTTAATTGAGATGTGGAGATTGCTTGGCAAAGAGGTACCAGAACACATCAGTGAAGAAG
AGCTCAAAACCATTATGGAATGTGTTTCTAAATCATCCAAAAAAAAATATTTAAAATATT
TATATATTAGGGAAAAAATGAAAAAAGCCAAGCAAATAAAAAAGGAAATGAAAGTAGCAG
CAAAAGAACAAGTAAACAAAGATCAGCTACCAGAAACTACTAAGGAAAATAAACAGCAAA
ACTTTCTATTTCTACGACTCTGGGATAGGAATATGGACATTGCAATGGGCTGGAAAGGTG
CCCAGGCCATGCAGTTTGGACAGCCTTTGGTTTTTGACATGGCTTATGATGACTGTATGA
AACCAAAAGAACTACAAAATGCTGTTTCCCAACTTTTAGAAAGTGAAGGATGGAACAGAA
GAGATGTTGATCCTTTCCATATTTATTTCTGCAATCTTAAAACTGATGGTGCTTACTATA
GAGAGTTAGTTAAACGTTATGGAGAAAAGTGGAACAAATTGCTTTTAACAGCAACAGAAA
AGTCTCATGTTGATTTATTTCCAAAGGACAGTATCATATACTTAACTGCAGATTCTCCCA
ATGTTATGACTACTTTTAAGCATGACAAAATTTATATAGTGGGATCTTTTGTTGATAAGA
ATATGCAGCCAGGTGCATCCCTAGCCAAAGCAAAACGGCTGAAGCTGGCAACAGAATGCC
TTCCATTAGATAAATATTTACAATGGGACACTGGTACCAAAAATCTCACCTTAGATCAAA
TGATACGTATTTTGTTATGTCTAAAAAACACTGGTAGTTGGGAAGAGGCTCTGAAGTTTG
TTCCTAGGAGAAAACATACTGGTTATCTGGAGATTTCTCAGCATTCTCAAGAGTTTGTCA
ACAGATTGAAGAAGTCAAAGACTTTCAGTTCATTTCCACGAGGCTCTGTAAATAGACGCT
CACAGAAAAGTTAGCTTGAATGAGAATATTTGATAGCTTAAAAAGTAATTGGGTTAGGAA
TACAGTTCTATTGGTATATTTCATCCTGAATGAAATTTACTTGCTCTTTCTTTTAAAGCT
TGTCTTTCCAAACTCACTGAAATATTGTGTTTTTTTTTCCGATTAATTGAATATCTGCAA
AACAAATATATTTTATTTACTATAAAAAGAAGCAATAATCTTAGAGAGTAAAGAGTTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAGCTCTAGGCCAGGTGCGGCTCCGATTCCTGGGCCGCTGTACACGGCCAAGTCCTG
CGTCTTCTTGTGATCCTTTTGATTTCCACCGGCGGGAGCCACTGTATCTGCACTCCTGGG
CTTTTCTTACATGCCTTTTCCTCAAAATGAGTGTCAGTATCACCTTCTTAAGACCTTTTA
CAAGAGTTTTGGTGCCATTCACCCTTCCTAGGAAGAGAAGGGTTTTATATACAACAATTC
TGCAGAGATACATGTCTTCCAAAATTCCAGCTGTGTCTAATCCTAGTAAGGAGAGTACAT
CATCTTCTGAACAGCTGGAGTTGGATGGGTGGAAAATCACAATGAAATCTAGTGTACAAG
AAGAGGGTGTTTCAACATTCTCAAGTAACAAGGATGAAGATCCTCTAGCTGCCACCAGGG
AGTTAATTGAGATGTGGAGATTGCTTGGCAAAGAGGTACCAGAACACATCAGTGAAGAAG
AGCTCAAAACCATTATGGAATGTGTTTCTAAATCATCCAAAAAAAAATATTTAAAATATT
TATATATTAGGGAAAAAATGAAAAAAGCCAAGCAAATAAAAAAGGAAATGAAAGTAGCAG
CAAAAGAACAAGTAAACAAAGATCAGCTACCAGAAACTACTAAGGAAAATAAACAGCAAA
ACTTTCTATTTCTACGACTCTGGGATAGGAATATGGACATTGCAATGGGCTGGAAAGGTG
CCCAGGCCATGCAGTTTGGACAGCCTTTGGTTTTTGACATGGCTTATGATGACTGTATGA
AACCAAAAGAACTACAAAATGCTGTTTCCCAACTTTTAGAAAGTGAAGGATGGAACAGAA
GAGATGTTGATCCTTTCCATATTTATTTCTGCAATCTTAAAACTGATGGTGCTTACTATA
GAGAGTTAGTTAAACGTTATGGAGAAAAGTGGAACAAATTGCTTTTAACAGCAACAGAAA
AGTCTCATGTTGATTTATTTCCAAAGGACAGTATCATATACTTAACTGCAGATTCTCCCA
ATGTTATGACTACTTTTAAGCATGACAAAATTTATATAGTGGGATCTTTTGTTGATAAGA
ATATGCAGCCAGGTGCATCCCTAGCCAAAGCAAAACGGCTGAAGCTGGCAACAGAATGCC
TTCCATTAGATAAATATTTACAATGGGACACTGGTACCAAAAATCTCACCTTAGATCAAA
TGATACGTATTTTGTTATGTCTAAAAAACACTGGTAGTTGGGAAGAGGCTCTGAAGTTTG
TTCCTAGGAGAAAACATACTGGTTATCTGGAGATTTCTCAGCATTCTCAAGAGTTTGTCA
ACAGATTGAAGAAGTCAAAGACTTTCAGTTCATTTCCACGAGGCTCTGTAAATAGACGCT
CACAGAAAAGTTAGCTTGAATGAGAATATTTGATAGCTTAAAAAGTAATTGGGTTAGGAA
TACAGTTCTATTGGTATATTTCATCCTGAATGAAATTTACTTGCTCTTTCTTTTAAAGCT
TGTCTTTCCAAACTCACTGAAATATTGTGTTTTTTTTTCCGATTAATTGAATATCTGCAA
AACAAATATATTTTATTTACTATAAAAAGAAGCAATAATCTTAGAGAGTAAAGAGTTGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61839573|ref|XP_610935.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839573|ref|XP_610935.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               118-1620, gnl|bosTau2|chr11 (21779785-21778292)
               

               
               118-1620, gnl|Hg17|chr3 (102766303-102767776)
               

               
               118-1620, gnl|Mm7|chr16 (55890368-55888830)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-1620, gnl|bosTau2|chr11 (21779785-21778292)
               

               
               118-1620, gnl|Hg17|chr3 (102766303-102767776)
               

               
               118-1620, gnl|Mm7|chr16 (55890368-55888830)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               bfe (0.449573)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	118-1620, gnl\|bosTau2\|chr11 (21779785-21778292)
	118-1620, gnl\|Hg17\|chr3 (102766303-102767776)
	118-1620, gnl\|Mm7\|chr16 (55890368-55888830)

	bfe (0.449573)
	spl (0.286369)
	sug (0.254582)
	mgp (0.230681)
	rec (0.17307)
	ski (0.146735)
	lyg (0.133103)
	tra (0.123092)
	cbl (0.114797)
	cty (0.10408)