Ss1.1-Pig4-TMW8033E24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGTGTTAGTTCATGAAGTTGTGCCATCTAAGTAATCAAAAATGGAAAATTCGGCAAAA GCAGAGGAATGTGAAAAGCTCTCTCTTAAAGAGGCAAAGACATCAATAGATTCAGAAACT GAATCTTCATTCAGTATTGATGAAAATACAACCTCTCCCGGGACCAGGCTTTCTGAAAAG GCTCCTGCTTGTGGGCTAGTAGGCACTCCAAAAAAGAGAAAAATGGAGTTTGAGGACGAT CTTGTAAAGGAAAGTTCTAGTTGTGGGGAAGACACTCCATCCAAGAAAAGAAAACTTGAT GCTGGAATTGTCCCAGAGGAAAAAGGTTCTGGAGATGATGAAGGCATTTCAAGGAAAAGA AGAATGGAAAGTGATGGTTTTACAAAAGATGAACCTTCTACTGGAGATGGCACTCAGAAA AAGAGAAAAATAGAACTTGAGGATGTTCCTGAAAAGCGAAAGAACTTGGAAGAAGGACAC AGCTCAGCAGTGGCTGCTCACTACAATGAACTCCAGGAAGTTGGTTTAGAGAAGCGTAGC CAAAGTCGAATTTTTTACCTAAGAAACTTTAATAATTGGATGAAAAGTGTCCTCATTGGA GAATTTTTAGAGAAGGTGCGGCAGAAAAAAAAACGTGATATCACTGTTTTGGACCTGGGA TGTGGTAAAGGTGGAGATTTGCTCAAATGGAAAAAGGGAAGAATTGACAAGCTAGTTTGT ACTGACATTGCTGATGTTTCTGTCAAACAGTGTCAGCAGAGGTATGAGGACATGAAAAAT CGTTGTCGTGACAATGAATATATTTTCAGTGCAGAATTTATTACTGCTGATTGTTCAAAG GAACTTTTGATCGATAAGTTTCGTGACCCAGAAATGTGCTTTGACATCTGCAGTTGTCAG TTCGTCTGCCATTACTCGTTTGAGTCCTACGAGCAGGCTGACATCATGCTCAGAAATGCC TGTGAGAGGCTGAGCCCTGGAGGCTACTTTATTGGTACCACTCCTAATAGCTTTGAATTG ATAAGACGCCTTGAAGCTTCAGAAACAGAATCATTTGGAAATGAAATATATACTGTGAAA TTTCAGAAGAAAGGAGATTATCCTTTATTTGGCTGCAAGTATGACTTCAACTTGGAAGGT GTTGTGGATGTCCCTGAATTCTTGGTCTATTTTCCATTGCTAAATGAAATGGCAAAGAAG TACAATATGAAACTAGTCTACCAAAAAACGTTTCTGGAATTCTATGAGGAAAAGATAAAG AACAATGAAAATAAAATGCTGTTAAAAAGAATGCAAGCCCTGGAGCCATACCCTGCAAGC GAGAATTCCAGACTTGCCTCTGAGAAGGCAGATGACTATGAACATGCAGCAAAGTACATG AAGAACAGTCAAGTGAGGTTACCTTTGGGAACGTTAAGTAAATCTGAATGGGAAGCTACA AGTATTTACCTGGTTTTTGCATTTGAGAAGCAGCAGTGAGCACATCACGTACTCCGTAGC CCCAGGACAGCTGTGTTCCACCTTGTACAGATTTGAATGGTCCATCTTGTGTAGATCTGA CAACCTTGTTTAATTATTCTCAGTGTGCAGGATGCTGCTGGAAACTACAGTGTATAAAGT CAACATTGCTGTCTGTGACAGATGAACTTATATGTATATAAGAGTGAGTCAGGACCTTTG TCTCTAAAAGTCTATTTTTAAATAATGTTCTAAGAATTCCATTTGCATCCATTCTCCTAG CTTATAAAAATTATAACATACTCGTTAAAGCCACTGAGTTCTTTCCCCAGTGCTCTGCTT TGTCTGGTGCTTATTTACAGTATTACATTTATTACAGTTGTAGAATTGGTGAGAGAGTGT ACTGGTTTGTGAGTGTGTGTGCTCATTTCCTTAGTTTTATTAGTATTTTTTCAAGATGAA ATTAATTGTATCCTGTACAATTGAATGTAAGTGTTCAATACATATTGCCAAATTTTGAAG TTTAAAACTAAATTTTAAGTGGAGTCCTCTTCATGGCTCAGCGGTTAATGATCCCAACTA GGATCCACAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGTGTTAGTTCATGAAGTTGTGCCATCTAAGTAATCAAAAATGGAAAATTCGGCAAAA GCAGAGGAATGTGAAAAGCTCTCTCTTAAAGAGGCAAAGACATCAATAGATTCAGAAACT GAATCTTCATTCAGTATTGATGAAAATACAACCTCTCCCGGGACCAGGCTTTCTGAAAAG GCTCCTGCTTGTGGGCTAGTAGGCACTCCAAAAAAGAGAAAAATGGAGTTTGAGGACGAT CTTGTAAAGGAAAGTTCTAGTTGTGGGGAAGACACTCCATCCAAGAAAAGAAAACTTGAT GCTGGAATTGTCCCAGAGGAAAAAGGTTCTGGAGATGATGAAGGCATTTCAAGGAAAAGA AGAATGGAAAGTGATGGTTTTACAAAAGATGAACCTTCTACTGGAGATGGCACTCAGAAA AAGAGAAAAATAGAACTTGAGGATGTTCCTGAAAAGCGAAAGAACTTGGAAGAAGGACAC AGCTCAGCAGTGGCTGCTCACTACAATGAACTCCAGGAAGTTGGTTTAGAGAAGCGTAGC CAAAGTCGAATTTTTTACCTAAGAAACTTTAATAATTGGATGAAAAGTGTCCTCATTGGA GAATTTTTAGAGAAGGTGCGGCAGAAAAAAAAACGTGATATCACTGTTTTGGACCTGGGA TGTGGTAAAGGTGGAGATTTGCTCAAATGGAAAAAGGGAAGAATTGACAAGCTAGTTTGT ACTGACATTGCTGATGTTTCTGTCAAACAGTGTCAGCAGAGGTATGAGGACATGAAAAAT CGTTGTCGTGACAATGAATATATTTTCAGTGCAGAATTTATTACTGCTGATTGTTCAAAG GAACTTTTGATCGATAAGTTTCGTGACCCAGAAATGTGCTTTGACATCTGCAGTTGTCAG TTCGTCTGCCATTACTCGTTTGAGTCCTACGAGCAGGCTGACATCATGCTCAGAAATGCC TGTGAGAGGCTGAGCCCTGGAGGCTACTTTATTGGTACCACTCCTAATAGCTTTGAATTG ATAAGACGCCTTGAAGCTTCAGAAACAGAATCATTTGGAAATGAAATATATACTGTGAAA TTTCAGAAGAAAGGAGATTATCCTTTATTTGGCTGCAAGTATGACTTCAACTTGGAAGGT GTTGTGGATGTCCCTGAATTCTTGGTCTATTTTCCATTGCTAAATGAAATGGCAAAGAAG TACAATATGAAACTAGTCTACCAAAAAACGTTTCTGGAATTCTATGAGGAAAAGATAAAG AACAATGAAAATAAAATGCTGTTAAAAAGAATGCAAGCCCTGGAGCCATACCCTGCAAGC GAGAATTCCAGACTTGCCTCTGAGAAGGCAGATGACTATGAACATGCAGCAAAGTACATG AAGAACAGTCAAGTGAGGTTACCTTTGGGAACGTTAAGTAAATCTGAATGGGAAGCTACA AGTATTTACCTGGTTTTTGCATTTGAGAAGCAGCAGTGAGCACATCACGTACTCCGTAGC CCCAGGACAGCTGTGTTCCACCTTGTACAGATTTGAATGGTCCATCTTGTGTAGATCTGA CAACCTTGTTTAATTATTCTCAGTGTGCAGGATGCTGCTGGAAACTACAGTGTATAAAGT CAACATTGCTGTCTGTGACAGATGAACTTATATGTATATAAGAGTGAGTCAGGACCTTTG TCTCTAAAAGTCTATTTTTAAATAATGTTCTAAGAATTCCATTTGCATCCATTCTCCTAG CTTATAAAAATTATAACATACTCGTTAAAGCCACTGAGTTCTTTCCCCAGTGCTCTGCTT TGTCTGGTGCTTATTTACAGTATTACATTTATTACAGTTGTAGAATTGGTGAGAGAGTGT ACTGGTTTGTGAGTGTGTGTGCTCATTTCCTTAGTTTTATTAGTATTTTTTCAAGATGAA ATTAATTGTATCCTGTACAATTGAATGTAAGTGTTCAATACATATTGCCAAATTTTGAAG TTTAAAACTAAATTTTAAGTGGAGTCCTCTTCATGGCTCAGCGGTTAATGATCCCAACTA GGATCCACAAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 7 entry(ies) | More info |
| Predicted RNA structure(s): 7 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 7 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 4-462, gnl|bosTau2|chr24 (30483187-30483645) | |
| 4-462, gnl|canFam2|chr1 (27527911-27527479) | |
| 4-462, gnl|dasNov1|scaffold_6946 (37559-37988) | |
| 4-462, gnl|echTel1|scaffold_287929 (46716-47155) | |
| 4-462, gnl|hg17|chr18 (13721412-13721860) | |
| 4-462, gnl|Hg17|chr18 (13721474-13721933) | |
| 4-462, gnl|mm7|chr18 (68698012-68698421) | |
| 4-462, gnl|Mm7|chr18 (68698074-68698494) | |
| 4-462, gnl|monDom2|scaffold_21 (17835090-17834640) | |
| 4-462, gnl|oryCun1|scaffold_200190 (73230-72770) | |
| 4-462, gnl|panTro1|chr17_random (3908170-3907724) | |
| 4-462, gnl|rheMac2|chr18 (998994-998547) | |
| 4-462, gnl|rn3|chr18 (64779667-64779279) | |
| 598-724, gnl|bosTau2|chr24 (30488684-30488810) | |
| 598-724, gnl|Hg17|chr18 (13727008-13727134) | |
| 598-724, gnl|Mm7|chr18 (68701615-68701741) | |
| 839-1022, gnl|bosTau2|chr24 (30493052-30493235) | |
| 839-1022, gnl|canFam2|chr1 (27518533-27518318) | |
| 839-1022, gnl|danRer3|chr19 (40859216-40859419) | |
| 839-1022, gnl|dasNov1|scaffold_89504 (2187-1979) | |
| 839-1022, gnl|echTel1|scaffold_287848 (1217-1403) | |
| 839-1022, gnl|fr1|chrUn (258228272-258228064) | |
| 839-1022, gnl|galGal2|chr2 (97091850-97092058) | |
| 839-1022, gnl|hg17|chr18 (13731493-13731701) | |
| 839-1022, gnl|Hg17|chr18 (13731507-13731690) | |
| 839-1022, gnl|mm7|chr18 (68705944-68706149) | |
| 839-1022, gnl|Mm7|chr18 (68705958-68706141) | |
| 839-1022, gnl|monDom2|scaffold_21 (17820762-17820555) | |
| 839-1022, gnl|oryCun1|scaffold_200190 (60847-60639) | |
| 839-1022, gnl|panTro1|chr17_random (3898089-3897881) | |
| 839-1022, gnl|rheMac2|chr18 (986931-986723) | |
| 839-1022, gnl|rn3|chr18 (64772084-64771876) | |
| 839-1022, gnl|tetNig1|chrUn_random (10352521-10352713) | |
| 839-1022, gnl|xenTro1|scaffold_202 (821575-821367) | |
| 1023-1187, gnl|bosTau2|chr24 (30493715-30493879) | |
| 1023-1187, gnl|canFam2|chr1 (27517852-27517656) | |
| 1023-1187, gnl|danRer3|chr19 (40861886-40862073) | |
| 1023-1187, gnl|dasNov1|scaffold_6946 (75895-76090) | |
| 1023-1187, gnl|echTel1|scaffold_287848 (1404-1568) | |
| 1023-1187, gnl|fr1|chrUn (258228007-258227829) | |
| 1023-1187, gnl|galGal2|chr2 (97092632-97092803) | |
| 1023-1187, gnl|hg17|chr18 (13732479-13732673) | |
| 1023-1187, gnl|Hg17|chr18 (13732487-13732651) | |
| 1023-1187, gnl|loxAfr1|scaffold_138428 (181-376) | |
| 1023-1187, gnl|mm7|chr18 (68706276-68706469) | |
| 1023-1187, gnl|Mm7|chr18 (68706283-68706447) | |
| 1023-1187, gnl|monDom2|scaffold_21 (17819472-17819287) | |
| 1023-1187, gnl|oryCun1|scaffold_200190 (60101-59906) | |
| 1023-1187, gnl|panTro1|chr17_random (3897104-3896910) | |
| 1023-1187, gnl|rheMac2|chr18 (985866-985674) | |
| 1023-1187, gnl|rn3|chr18 (64771752-64771559) | |
| 1023-1187, gnl|tetNig1|chrUn_random (10352788-10352968) | |
| 1023-1187, gnl|xenTro1|scaffold_202 (820039-819853) | |
| 1188-1305, gnl|bosTau2|chr24 (30496756-30496873) | |
| 1188-1305, gnl|canFam2|chr1 (27513640-27513489) | |
| 1188-1305, gnl|danRer3|chr19 (40862805-40862943) | |
| 1188-1305, gnl|dasNov1|scaffold_6946 (79066-79219) | |
| 1188-1305, gnl|echTel1|scaffold_287848 (1569-1699) | |
| 1188-1305, gnl|fr1|chrUn (258227779-258227622) | |
| 1188-1305, gnl|galGal2|chr2 (97093759-97093911) | |
| 1188-1305, gnl|hg17|chr18 (13736206-13736358) | |
| 1188-1305, gnl|Hg17|chr18 (13736219-13736336) | |
| 1188-1305, gnl|loxAfr1|scaffold_13242 (63448-63600) | |
| 1188-1305, gnl|mm7|chr18 (68710277-68710428) | |
| 1188-1305, gnl|Mm7|chr18 (68710289-68710406) | |
| 1188-1305, gnl|monDom2|scaffold_21 (17812480-17812335) | |
| 1188-1305, gnl|oryCun1|scaffold_65004 (2932-2779) | |
| 1188-1305, gnl|panTro1|chr17_random (3893800-3893648) | |
| 1188-1305, gnl|rheMac2|chr18 (981906-981754) | |
| 1188-1305, gnl|rn3|chr18 (64767907-64767768) | |
| 1188-1305, gnl|tetNig1|chrUn_random (10353011-10353151) | |
| 1188-1305, gnl|xenTro1|scaffold_202 (818437-818295) | |
| 1442-1960, gnl|bosTau2|chr24 (30502188-30502712) | |
| 1442-1960, gnl|Hg17|chr18 (13749941-13750469) | |
| 1442-1960, gnl|Mm7|chr18 (68713613-68714100) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-462, gnl|bosTau2|chr24 (30483187-30483645) | |
| 4-462, gnl|canFam2|chr1 (27527911-27527479) | |
| 4-462, gnl|dasNov1|scaffold_6946 (37559-37988) | |
| 4-462, gnl|echTel1|scaffold_287929 (46716-47155) | |
| 4-462, gnl|hg17|chr18 (13721412-13721860) | |
| 4-462, gnl|Hg17|chr18 (13721474-13721933) | |
| 4-462, gnl|mm7|chr18 (68698012-68698421) | |
| 4-462, gnl|Mm7|chr18 (68698074-68698494) | |
| 4-462, gnl|monDom2|scaffold_21 (17835090-17834640) | |
| 4-462, gnl|oryCun1|scaffold_200190 (73230-72770) | |
| 4-462, gnl|panTro1|chr17_random (3908170-3907724) | |
| 4-462, gnl|rheMac2|chr18 (998994-998547) | |
| 4-462, gnl|rn3|chr18 (64779667-64779279) | |
| 598-724, gnl|bosTau2|chr24 (30488684-30488810) | |
| 598-724, gnl|Hg17|chr18 (13727008-13727134) | |
| 598-724, gnl|Mm7|chr18 (68701615-68701741) | |
| 839-1022, gnl|bosTau2|chr24 (30493052-30493235) | |
| 839-1022, gnl|canFam2|chr1 (27518533-27518318) | |
| 839-1022, gnl|danRer3|chr19 (40859216-40859419) | |
| 839-1022, gnl|dasNov1|scaffold_89504 (2187-1979) | |
| 839-1022, gnl|echTel1|scaffold_287848 (1217-1403) | |
| 839-1022, gnl|fr1|chrUn (258228272-258228064) | |
| 839-1022, gnl|galGal2|chr2 (97091850-97092058) | |
| 839-1022, gnl|hg17|chr18 (13731493-13731701) | |
| 839-1022, gnl|Hg17|chr18 (13731507-13731690) | |
| 839-1022, gnl|mm7|chr18 (68705944-68706149) | |
| 839-1022, gnl|Mm7|chr18 (68705958-68706141) | |
| 839-1022, gnl|monDom2|scaffold_21 (17820762-17820555) | |
| 839-1022, gnl|oryCun1|scaffold_200190 (60847-60639) | |
| 839-1022, gnl|panTro1|chr17_random (3898089-3897881) | |
| 839-1022, gnl|rheMac2|chr18 (986931-986723) | |
| 839-1022, gnl|rn3|chr18 (64772084-64771876) | |
| 839-1022, gnl|tetNig1|chrUn_random (10352521-10352713) | |
| 839-1022, gnl|xenTro1|scaffold_202 (821575-821367) | |
| 1023-1187, gnl|bosTau2|chr24 (30493715-30493879) | |
| 1023-1187, gnl|canFam2|chr1 (27517852-27517656) | |
| 1023-1187, gnl|danRer3|chr19 (40861886-40862073) | |
| 1023-1187, gnl|dasNov1|scaffold_6946 (75895-76090) | |
| 1023-1187, gnl|echTel1|scaffold_287848 (1404-1568) | |
| 1023-1187, gnl|fr1|chrUn (258228007-258227829) | |
| 1023-1187, gnl|galGal2|chr2 (97092632-97092803) | |
| 1023-1187, gnl|hg17|chr18 (13732479-13732673) | |
| 1023-1187, gnl|Hg17|chr18 (13732487-13732651) | |
| 1023-1187, gnl|loxAfr1|scaffold_138428 (181-376) | |
| 1023-1187, gnl|mm7|chr18 (68706276-68706469) | |
| 1023-1187, gnl|Mm7|chr18 (68706283-68706447) | |
| 1023-1187, gnl|monDom2|scaffold_21 (17819472-17819287) | |
| 1023-1187, gnl|oryCun1|scaffold_200190 (60101-59906) | |
| 1023-1187, gnl|panTro1|chr17_random (3897104-3896910) | |
| 1023-1187, gnl|rheMac2|chr18 (985866-985674) | |
| 1023-1187, gnl|rn3|chr18 (64771752-64771559) | |
| 1023-1187, gnl|tetNig1|chrUn_random (10352788-10352968) | |
| 1023-1187, gnl|xenTro1|scaffold_202 (820039-819853) | |
| 1188-1305, gnl|bosTau2|chr24 (30496756-30496873) | |
| 1188-1305, gnl|canFam2|chr1 (27513640-27513489) | |
| 1188-1305, gnl|danRer3|chr19 (40862805-40862943) | |
| 1188-1305, gnl|dasNov1|scaffold_6946 (79066-79219) | |
| 1188-1305, gnl|echTel1|scaffold_287848 (1569-1699) | |
| 1188-1305, gnl|fr1|chrUn (258227779-258227622) | |
| 1188-1305, gnl|galGal2|chr2 (97093759-97093911) | |
| 1188-1305, gnl|hg17|chr18 (13736206-13736358) | |
| 1188-1305, gnl|Hg17|chr18 (13736219-13736336) | |
| 1188-1305, gnl|loxAfr1|scaffold_13242 (63448-63600) | |
| 1188-1305, gnl|mm7|chr18 (68710277-68710428) | |
| 1188-1305, gnl|Mm7|chr18 (68710289-68710406) | |
| 1188-1305, gnl|monDom2|scaffold_21 (17812480-17812335) | |
| 1188-1305, gnl|oryCun1|scaffold_65004 (2932-2779) | |
| 1188-1305, gnl|panTro1|chr17_random (3893800-3893648) | |
| 1188-1305, gnl|rheMac2|chr18 (981906-981754) | |
| 1188-1305, gnl|rn3|chr18 (64767907-64767768) | |
| 1188-1305, gnl|tetNig1|chrUn_random (10353011-10353151) | |
| 1188-1305, gnl|xenTro1|scaffold_202 (818437-818295) | |
| 1442-1960, gnl|bosTau2|chr24 (30502188-30502712) | |
| 1442-1960, gnl|Hg17|chr18 (13749941-13750469) | |
| 1442-1960, gnl|Mm7|chr18 (68713613-68714100) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cte (0.58548) | |
| ssp (0.271039) | |
| thg (0.253582) | |
| tra (0.246184) | |
| ece (0.229305) | |
| nms (0.213858) | |
| tes (0.207814) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| ton (0.1755) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| bla (0.124347) | |
| eru (0.120048) | |
| spc (0.113366) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| ssp (0.271039) | |
| thg (0.253582) | |
| tra (0.246184) | |
| ece (0.229305) | |
| nms (0.213858) | |
| tes (0.207814) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| ton (0.1755) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| bla (0.124347) | |
| eru (0.120048) | |
| spc (0.113366) |