Ss1.1-Pig4-TMW8033F16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGATGCCTACCTGATTGTCTACTCCATCACGGACCGCGCCAGCTTCGAGAAGGCGTCTG AGCTGCGAATCCAGCTCCGCAGGGCCCGGCAGACAGAGGACATTCCTATAATCTTGGTTG GCAACAAAAGTGACCTGGTACGGTGCCGGGAAGTGTCTGTATCAGAAGGCAGAGCGTGTG CTGTGGTGTTCGACTGCAAGTTCATTGAGACCTCAGCGGCTGTCCAGCACAACGTCAAGG AGCTGTTTGAGGGCATCGTGCGGCAGGTCCGACTCCGGCGGGACAGCAAGGAGAAAAACG AGCGGCGACTGGCCTATCAGAAGAGGAGGGAGAGCATCCCCAGGAAAGCCAGACGCTTCT GGGGCAAGATCGTGGCCAAAAACAACAAGAACATGGCCTTCAAGCTCAAGTCCAAATCCT GCCATGACCTCTCTGTGCTCTAGGTACCCAGAGTCACCCAGATGTCCCCCGATGGACGTC ACTGAAGGCCATTGGGACCCATAATCTATATTAGATTGGATTCTTAAGTAGTGTAAGATG TGGCTTCCCCTGTTGTAGCTGGGAACTAACATGTTCGCTGGTGGGCAACATTAATGCATG GGAAATGAAAGATCTTTGTAAAGAGTCAGTATTTATTTACATGAAAAGCCTGACCTTTGC TACATGGACACCCGAGACTCGAGAGAGCGTGGTTGGTGTTCACATGTGTTTCCTCTCTCC TTTGGTTTGTAGAGGATGAGTGCCTAGGCAAGAACTTTTTCTTATTAAGATGTTGCCCGG TGTTCTGATATGTGACTCTGAGGCCAATCAGTGGGTCATAGATATAGGAAGGCTGTCAAA GGAATTTTTCAAAGGAGGGAGAACTTCTTTCTCTGTACCTTGTATTCGTGGAGCTAGGAT TGCCCGACGGGGCTCATCACAATCATGACTATGATGCTCCATGAAGCTGTGAAAAGAAAT GATGGACTTGCTGGAAACTAAAGCTTAGCAAACAGTTTTTTGTTCAATGCCCACAGTGGG GGATCCAGAAATTTGTAGAATTGGGAACTGATACCTGTACCACTAATGGGTTCAAAAATT CTCTCTTTACGACTGTGTCTTATAATTTTTTATTTAGGGGAAAATTATTTTAGCCAAATT CTATTGCATCAAACCACCTTTTGTGTTTCATTATTTTTCAAATCATAAGGGCATCATAAA AATATTTTTAAAATCTGAATTATTGAGAACCTGGAGCGCACAATGCAAAGTTTTTGAATA TAATCGAAGGTCTGAATTTTTATAAAACATGAGACATAATACTTCCAATACTTTGGGTTG ACCCTTGTATACCACAGCTTTGCTCTATTTATTATTATTTTGCAAAATAACAACCATTTT AACATTTGATAAAGCATATTTATGAACATATTTCTTAATGAGAAAAATGCTCATTTTATT ACCATTTTCTATCTTTTTCAGAATATGCAAGTTTTTATCTATATGTCTTCTAATAAAAGA AATAAAATATTTGAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGATGCCTACCTGATTGTCTACTCCATCACGGACCGCGCCAGCTTCGAGAAGGCGTCTG AGCTGCGAATCCAGCTCCGCAGGGCCCGGCAGACAGAGGACATTCCTATAATCTTGGTTG GCAACAAAAGTGACCTGGTACGGTGCCGGGAAGTGTCTGTATCAGAAGGCAGAGCGTGTG CTGTGGTGTTCGACTGCAAGTTCATTGAGACCTCAGCGGCTGTCCAGCACAACGTCAAGG AGCTGTTTGAGGGCATCGTGCGGCAGGTCCGACTCCGGCGGGACAGCAAGGAGAAAAACG AGCGGCGACTGGCCTATCAGAAGAGGAGGGAGAGCATCCCCAGGAAAGCCAGACGCTTCT GGGGCAAGATCGTGGCCAAAAACAACAAGAACATGGCCTTCAAGCTCAAGTCCAAATCCT GCCATGACCTCTCTGTGCTCTAGGTACCCAGAGTCACCCAGATGTCCCCCGATGGACGTC ACTGAAGGCCATTGGGACCCATAATCTATATTAGATTGGATTCTTAAGTAGTGTAAGATG TGGCTTCCCCTGTTGTAGCTGGGAACTAACATGTTCGCTGGTGGGCAACATTAATGCATG GGAAATGAAAGATCTTTGTAAAGAGTCAGTATTTATTTACATGAAAAGCCTGACCTTTGC TACATGGACACCCGAGACTCGAGAGAGCGTGGTTGGTGTTCACATGTGTTTCCTCTCTCC TTTGGTTTGTAGAGGATGAGTGCCTAGGCAAGAACTTTTTCTTATTAAGATGTTGCCCGG TGTTCTGATATGTGACTCTGAGGCCAATCAGTGGGTCATAGATATAGGAAGGCTGTCAAA GGAATTTTTCAAAGGAGGGAGAACTTCTTTCTCTGTACCTTGTATTCGTGGAGCTAGGAT TGCCCGACGGGGCTCATCACAATCATGACTATGATGCTCCATGAAGCTGTGAAAAGAAAT GATGGACTTGCTGGAAACTAAAGCTTAGCAAACAGTTTTTTGTTCAATGCCCACAGTGGG GGATCCAGAAATTTGTAGAATTGGGAACTGATACCTGTACCACTAATGGGTTCAAAAATT CTCTCTTTACGACTGTGTCTTATAATTTTTTATTTAGGGGAAAATTATTTTAGCCAAATT CTATTGCATCAAACCACCTTTTGTGTTTCATTATTTTTCAAATCATAAGGGCATCATAAA AATATTTTTAAAATCTGAATTATTGAGAACCTGGAGCGCACAATGCAAAGTTTTTGAATA TAATCGAAGGTCTGAATTTTTATAAAACATGAGACATAATACTTCCAATACTTTGGGTTG ACCCTTGTATACCACAGCTTTGCTCTATTTATTATTATTTTGCAAAATAACAACCATTTT AACATTTGATAAAGCATATTTATGAACATATTTCTTAATGAGAAAAATGCTCATTTTATT ACCATTTTCTATCTTTTTCAGAATATGCAAGTTTTTATCTATATGTCTTCTAATAAAAGA AATAAAATATTTGAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 360-478, - strand, RNAz p=0.508698 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 360-478, - strand, RNAz p=0.508698 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 5-160, gnl|bosTau2|chr13 (43214151-43214306) | |
| 5-160, gnl|canFam2|chr24 (23967704-23967900) | |
| 5-160, gnl|danRer3|chr11 (24291092-24291283) | |
| 5-160, gnl|dasNov1|scaffold_17249 (46402-46595) | |
| 5-160, gnl|echTel1|scaffold_272103 (5492-5688) | |
| 5-160, gnl|fr1|chrUn (62227778-62227587) | |
| 5-160, gnl|galGal2|chr20 (9565825-9566017) | |
| 5-160, gnl|hg17|chr20 (29533767-29533963) | |
| 5-160, gnl|Hg17|chr20 (29533792-29533947) | |
| 5-160, gnl|loxAfr1|scaffold_1634 (122765-122961) | |
| 5-160, gnl|mm7|chr2 (152374329-152374525) | |
| 5-160, gnl|Mm7|chr2 (152374354-152374509) | |
| 5-160, gnl|monDom2|scaffold_38 (1595195-1595004) | |
| 5-160, gnl|oryCun1|scaffold_211458 (124688-124504) | |
| 5-160, gnl|panTro1|chr21 (31223298-31223494) | |
| 5-160, gnl|rheMac2|chr10 (33088426-33088230) | |
| 5-160, gnl|rn3|chr3 (142889229-142889420) | |
| 5-160, gnl|tetNig1|chr8 (7381087-7380896) | |
| 5-160, gnl|xenTro1|scaffold_1725 (64574-64774) | |
| 161-1522, gnl|bosTau2|chr19 (35420982-35422348) | |
| 161-1522, gnl|Hg17|chr8 (95331996-95330657) | |
| 161-1522, gnl|Mm7|chr4 (11640618-11641898) | |
| 163-457, gnl|bosTau2|chr18 (28174488-28174196) | |
| 163-457, gnl|Hg17|chr16 (65513759-65513473) | |
| 163-457, gnl|Mm7|chr8 (103228034-103227739) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-160, gnl|bosTau2|chr13 (43214151-43214306) | |
| 5-160, gnl|canFam2|chr24 (23967704-23967900) | |
| 5-160, gnl|danRer3|chr11 (24291092-24291283) | |
| 5-160, gnl|dasNov1|scaffold_17249 (46402-46595) | |
| 5-160, gnl|echTel1|scaffold_272103 (5492-5688) | |
| 5-160, gnl|fr1|chrUn (62227778-62227587) | |
| 5-160, gnl|galGal2|chr20 (9565825-9566017) | |
| 5-160, gnl|hg17|chr20 (29533767-29533963) | |
| 5-160, gnl|Hg17|chr20 (29533792-29533947) | |
| 5-160, gnl|loxAfr1|scaffold_1634 (122765-122961) | |
| 5-160, gnl|mm7|chr2 (152374329-152374525) | |
| 5-160, gnl|Mm7|chr2 (152374354-152374509) | |
| 5-160, gnl|monDom2|scaffold_38 (1595195-1595004) | |
| 5-160, gnl|oryCun1|scaffold_211458 (124688-124504) | |
| 5-160, gnl|panTro1|chr21 (31223298-31223494) | |
| 5-160, gnl|rheMac2|chr10 (33088426-33088230) | |
| 5-160, gnl|rn3|chr3 (142889229-142889420) | |
| 5-160, gnl|tetNig1|chr8 (7381087-7380896) | |
| 5-160, gnl|xenTro1|scaffold_1725 (64574-64774) | |
| 161-1522, gnl|bosTau2|chr19 (35420982-35422348) | |
| 161-1522, gnl|Hg17|chr8 (95331996-95330657) | |
| 161-1522, gnl|Mm7|chr4 (11640618-11641898) | |
| 163-457, gnl|bosTau2|chr18 (28174488-28174196) | |
| 163-457, gnl|Hg17|chr16 (65513759-65513473) | |
| 163-457, gnl|Mm7|chr8 (103228034-103227739) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| aor (0.781097) | |
| gul (0.710353) | |
| pro (0.512033) | |
| bfe (0.449573) | |
| tra (0.369276) | |
| cga (0.279096) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| pty (0.142714) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.781097) | |
| gul (0.710353) | |
| pro (0.512033) | |
| bfe (0.449573) | |
| tra (0.369276) | |
| cga (0.279096) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| pty (0.142714) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) |