Non-Coding RNA Search

Ss1.1-Pig4-TMW8033G02.5

Sequence:


               
               TGGAGGCTTTTTGGTCTGGTTGTTTGATCAGGAGCCTGTTTACAAAAACTCTTCATAAAG
AGTACAAGTGCAGCTGCCAAAGGGGAGAGAATTGAGACTCCTTGCCCTTTCATACTCTTT
TCTTTTGGCATTCAGGACACTAAGGCAGGAGGACCACATGGGTTCTGGTTGGTGAGTGTC
CTTATCACAAAAACATTTGCCTTACAGTGTCCTGCTCACTGCCACAAAAGGCTCTACTTT
ATGGTTATTTTCCTTCTTAGTTAAAATGTTCTTAAAGATGTGTTACATTATATCATAAAC
ATGGAATGAGATATCAGTGAGGTATCATGAAAAACAGATTTTGTCTTTTACATGGGCTTC
TTTCTTGGTTTGAAACATCCCCAACATTTCCTGCAAATCAATATACTTACAAAGGGGTCA
GCTTTTTAAAAGAAGTATTTCCTATTTAAAAAAAAAATAGTGCCTTTTTGGTATTGCAAT
TCAGTGGAACACTGAAATAGAGTGTTGTTGTTTATAATTTAAGAGTTAAGAGTGGCAACA
GTTTCATTTGTGATAAGATTTGGAAAGCCTTTTCATCACTACAATCTTAGAGGATTGACA
GTACAGGATTTTTTGTTTAGAGAAAGGATTATTTAGACTTTCAAAGAAGAAATGGCTGTG
TTGTGGGTCTTTTGGTAATTCACGAATACAAATTTGCTTTGACGGATCAATAGATATTGT
CTCCTCAGCTAAAAAAGCAATATGACTTTTGTATATGCTGTTCAATTTAAGTTTTCTGTT
AAGTAATCATTTCTCATTCCAAAGACAGAGTGCAAAAAACTTCAGCGCTGCTTGCAAGTC
TTATTTCAACTGCAGATTATTTTCCCCATTGGAAAGCTGACTATTTTCATTTTAGAAAAA
TGGGTTGTTTGAAGATGAAAGTCTTTTATCTTTTTTCACAATTTATTTTGGCTATGTGTT
CGTACATCTTATTAAATATTGCATATACTTTATTGCAACTACTTTGTTATTTCTACTTTT
TAGATAAATGCTACAAAGGAAAACTTGATTTCATTGTTCATCAAATTAAATAAATTAAGA
AAATAGTGGTTTGTGTAGAAATTGGAGAGAATTGTTTTTCATATTTGGTTGAATCACAAC
AGTGCATCTCTTGTTGTGAAATGTAATTAAATGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGGCTTTTTGGTCTGGTTGTTTGATCAGGAGCCTGTTTACAAAAACTCTTCATAAAG
AGTACAAGTGCAGCTGCCAAAGGGGAGAGAATTGAGACTCCTTGCCCTTTCATACTCTTT
TCTTTTGGCATTCAGGACACTAAGGCAGGAGGACCACATGGGTTCTGGTTGGTGAGTGTC
CTTATCACAAAAACATTTGCCTTACAGTGTCCTGCTCACTGCCACAAAAGGCTCTACTTT
ATGGTTATTTTCCTTCTTAGTTAAAATGTTCTTAAAGATGTGTTACATTATATCATAAAC
ATGGAATGAGATATCAGTGAGGTATCATGAAAAACAGATTTTGTCTTTTACATGGGCTTC
TTTCTTGGTTTGAAACATCCCCAACATTTCCTGCAAATCAATATACTTACAAAGGGGTCA
GCTTTTTAAAAGAAGTATTTCCTATTTAAAAAAAAAATAGTGCCTTTTTGGTATTGCAAT
TCAGTGGAACACTGAAATAGAGTGTTGTTGTTTATAATTTAAGAGTTAAGAGTGGCAACA
GTTTCATTTGTGATAAGATTTGGAAAGCCTTTTCATCACTACAATCTTAGAGGATTGACA
GTACAGGATTTTTTGTTTAGAGAAAGGATTATTTAGACTTTCAAAGAAGAAATGGCTGTG
TTGTGGGTCTTTTGGTAATTCACGAATACAAATTTGCTTTGACGGATCAATAGATATTGT
CTCCTCAGCTAAAAAAGCAATATGACTTTTGTATATGCTGTTCAATTTAAGTTTTCTGTT
AAGTAATCATTTCTCATTCCAAAGACAGAGTGCAAAAAACTTCAGCGCTGCTTGCAAGTC
TTATTTCAACTGCAGATTATTTTCCCCATTGGAAAGCTGACTATTTTCATTTTAGAAAAA
TGGGTTGTTTGAAGATGAAAGTCTTTTATCTTTTTTCACAATTTATTTTGGCTATGTGTT
CGTACATCTTATTAAATATTGCATATACTTTATTGCAACTACTTTGTTATTTCTACTTTT
TAGATAAATGCTACAAAGGAAAACTTGATTTCATTGTTCATCAAATTAAATAAATTAAGA
AAATAGTGGTTTGTGTAGAAATTGGAGAGAATTGTTTTTCATATTTGGTTGAATCACAAC
AGTGCATCTCTTGTTGTGAAATGTAATTAAATGCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-214, + strand, RNAz p=0.898233

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-214, + strand, RNAz p=0.898233

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006047, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006047, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1176, gnl|bosTau2|chr13 (45093395-45092261)
               

               
               1-1176, gnl|Hg17|chr20 (33702767-33701494)
               

               
               1-1176, gnl|Mm7|chr2 (155835156-155834010)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1176, gnl|bosTau2|chr13 (45093395-45092261)
               

               
               1-1176, gnl|Hg17|chr20 (33702767-33701494)
               

               
               1-1176, gnl|Mm7|chr2 (155835156-155834010)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ret (0.257467)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-1176, gnl\|bosTau2\|chr13 (45093395-45092261)
	1-1176, gnl\|Hg17\|chr20 (33702767-33701494)
	1-1176, gnl\|Mm7\|chr2 (155835156-155834010)

	ret (0.257467)
	thg (0.253582)
	cbe (0.239234)
	fhi (0.169578)
	tbr (0.154178)
	eli (0.151814)
	lin (0.145603)
	ste (0.135208)
	ute (0.132784)
	kid (0.129735)
	med (0.116252)
	ecc (0.115035)