Non-Coding RNA Search

Ss1.1-Pig4-TMW8033G05.3

Sequence:


               
               TGGAAAAGCAAGATTAATATCTAGAAGGTGGCAAGTCATTGCTTCTGTTCCGCCAGCAAT
GAGTTGTTTAATTAAATACTCTAGGTTTCCTTTGCTTTACATTCCCAATTCTAACCCCAA
ACAGTGGCCACTGGAACACCAAAAAAGGCATTTAAACCCCTGAAGATGGGCTTTAAAAGA
TACAGAAACAGCAGCATTGTCATTTTCCAGGTTCATCACCATTTTGCTCTGCTACCCATC
CTTTCCCCACTGCAGCCAGGCCAGATGTGAAGTTTCTGTTAATCTATGAATTGGGAAACA
TAAATTTGGGTTCTGGAACAATTACCAACTAAATTGCTTACCATCTGTGGGGTGCACCTT
TCAGAGAATATTTTAACGATACAGTGAAATCGCTCTTCTGAGTTTGAGGTCCCAATCGGG
CATTAAGATCAAAATCTTAAAAGTCTTTGGAACTCCTTAGGAGAAAAGCAAGCTGCCTCA
ATCTCAATACTGGACCTTGAGACTGTACTCCCCTCTTCATAGTGTAGGGTGGGGTGCCTC
ACCTTAAGGAAATCATTTTTCCAGTTAAGATTGACCATAAATCCGTACGAGAAGTAAGCC
TATCTTTCTGAACACTTTTGTGCTAGATTGAAAATACTAACCTAAAGCTGCAATAGAAGA
TAGGTATCCTCTTTCACCTCATTACTGTCCCACTGAAAAAAAAAAAACAAACAAACAGCA
TTTCAGGGTTAAACCTTGGTCTGTTTGGTATCTGTTCGTTGTGGAGAAAATATATCACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAAAGCAAGATTAATATCTAGAAGGTGGCAAGTCATTGCTTCTGTTCCGCCAGCAAT
GAGTTGTTTAATTAAATACTCTAGGTTTCCTTTGCTTTACATTCCCAATTCTAACCCCAA
ACAGTGGCCACTGGAACACCAAAAAAGGCATTTAAACCCCTGAAGATGGGCTTTAAAAGA
TACAGAAACAGCAGCATTGTCATTTTCCAGGTTCATCACCATTTTGCTCTGCTACCCATC
CTTTCCCCACTGCAGCCAGGCCAGATGTGAAGTTTCTGTTAATCTATGAATTGGGAAACA
TAAATTTGGGTTCTGGAACAATTACCAACTAAATTGCTTACCATCTGTGGGGTGCACCTT
TCAGAGAATATTTTAACGATACAGTGAAATCGCTCTTCTGAGTTTGAGGTCCCAATCGGG
CATTAAGATCAAAATCTTAAAAGTCTTTGGAACTCCTTAGGAGAAAAGCAAGCTGCCTCA
ATCTCAATACTGGACCTTGAGACTGTACTCCCCTCTTCATAGTGTAGGGTGGGGTGCCTC
ACCTTAAGGAAATCATTTTTCCAGTTAAGATTGACCATAAATCCGTACGAGAAGTAAGCC
TATCTTTCTGAACACTTTTGTGCTAGATTGAAAATACTAACCTAAAGCTGCAATAGAAGA
TAGGTATCCTCTTTCACCTCATTACTGTCCCACTGAAAAAAAAAAAACAAACAAACAGCA
TTTCAGGGTTAAACCTTGGTCTGTTTGGTATCTGTTCGTTGTGGAGAAAATATATCACTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               385-504, - strand, RNAz p=0.838678

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-504, - strand, RNAz p=0.838678

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-709, gnl|bosTau2|chr23 (8012686-8011978)
               

               
               1-709, gnl|Hg17|chr6 (34358700-34357963)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-709, gnl|bosTau2|chr23 (8012686-8011978)
               

               
               1-709, gnl|Hg17|chr6 (34358700-34357963)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               vin (0.332557)
               

               
               fcc (0.197785)
               

               
               tbr (0.154178)
               

               
               sug (0.127291)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               fcc (0.197785)
               

               
               tbr (0.154178)
               

               
               sug (0.127291)

	1-709, gnl\|bosTau2\|chr23 (8012686-8011978)
	1-709, gnl\|Hg17\|chr6 (34358700-34357963)