Non-Coding RNA Search

Ss1.1-Pig4-TMW8033G06.5.5

Sequence:


               
               GGCCGGCGGGCCGGAGCGCAGGCGGCACACCCCGCCCCGGCACGCCCTGCCGAGCTCAGG
AGCACGCCGCGCGCCACTGTTCCCTCAGCCGAGGACGCCGCCGGGGGGCCGGGAGCCGAG
GTGTGGGCCATCCCCGAGCGCACCCAGCTTCTGCCGATCAGGAGTTGGAACGCAGCACCT
TCCCTTCCTCCCAGCCCTGCCTCCTTCTGCAGAGCAGAGCTCACTAGAACTTGTTTCGCC
TTTTACTCTGGGGGGAGAGAAGCAGAGGATGAGGAGAAAATAATGAATGTCAAAGGAAGA
GTGGTTCTGTCAATGCTGCTTGTCTCAACTGTAATGGTTGTGTTTTGGGAATACATCAAC
AGAAACCCAGAAGTTGGCAGCAGTGCTCAGAGGGGCTGGTGGTTTCCGAGCTGGTTTAAC
AATGGGACTCACAGTTACCACGAAGAAGAAGACGCTATAGGCAACGAAAAGGAACAAAGA
AAAGAAGACAACAGAGGAGAGCTTCCGCTAGTGGACTGGTTTAATCCTGAGAAACGCCCA
GAGGTCGTGACCATAACCAGATGGAAGGCTCCAGTGGTATGGGAAGGCACTTACAACAGA
GCCGTCTTAGATAATTATTATGCCAAACAGAAAATTACCGTGGGCTTGACGGTTTTTGCT
GTCGGAAGATACATTGAGCATTACTTGGAGGAGTTCTTAATATCTGCAAATACATACTTC
ATGGTTGGCCACAAAGTCATCTTTTACATCATGGTGGATGATATCTCCAGGATGCCTTTG
ATAGAGCTGGGTCCTCTGCGTTCCTTTAAAGTGTTTGAGATCAAGTCCGAGAAGAGGTGG
CAAGACATCAGCATGATGCGCATGAAGACCATCGGGGAGCACATCCTGGCCCACATCCAG
CACGAGGTGGACTTCCTCTTCTGCATGGACGTGGATCAGGTCTTCCAAAACAACTTTGGG
GTGGAGACCCTGGGCCAGTCGGTGGCTCAGCTACAGGCCTGGTGGTACAAGGCACATCCT
GACGAGTTCACCTACGAGAGGCGGAAGGAGTCCGCAGCCTACATTCCGTTTGGCCAGGGG
GATTTTTATTACCACGCAGCCATTTTTGGGGGAACACCCACTCAGGTTCTAAACATCACT
CAGGAGTGCTTCAAGGGAATCCTCCAGGACAAGGAAAATGACATAGAAGCCGAGTGGCAT
GATGAAAGCCATCTAAACAAGTATTTCCTTCTCAACAAACCCACTAAAATCTTATCCCCA
GAATACTGCTGGGATTATCATATAGGCATGTCTGTGGATATTAGGATTGTCAAGATAGCT
TGGCAGAAAAAAGAGTATAATTTGGTTAGAAATAACATCTGACTTTAAATTGTGCCAGCA
GTTTTCTGAATTTGAAAGAGTATTACTCTGGCTACTTCCTCAGAGAAGTAGCACTTAATT
TTAACTTTTAAAAAAATACTAACAAAATACCAACACAGTAAGTACATATTATTCTTCCTT
GCAACTTTGAGCCTTGTCAAATGGGAGAATGACTCTGTAGTAATCAGATGTAAATTCCCA
ATGATTTCTTATCTGTTCTGGGTTGAGGGGGTATATACTATTAACTGAACCAAAAAAAAA
AATTGTCATAGGCAAAGAAAAAGTCAGAGACACTCTACATGTCATACTGGAGAAAAGTAT
GCAAAGGGAAGTGTTTGGCAACAAAATAAGATTGGGAGGGGTCGTCCTCTTGATTTTAGC
GTCTTCCTGTCTCTGCTAAGTCTAAAGCAACAGAGTTGCTTTGCAGCAGGAGATCAGAGT
CTACCTTAGCAATCCTCAGATGATTTCAACAGCAGAGGACTTCAGGTTATTTGAAGTCCA
TGTCCTTTTCGCATCAGGGTTTTGTTTGGCTTCTGCGCAGATACTGATCAAGATTCCCAA
TGGTGAATGTTGGGAGTTACAGGGAATCCGAATGAACCAATGGGAGCTCAGCACGAAATA
AAAGCACAGCTTCTAAGTAAGTTTGCCATGAAATAGCGAAGACAGATTGGAAAGAGAGGG
GGCTGATCACTGTGGGGCAATGCCATTTCTAAGAGACACAGGGCATGGAGTTGGCATGTA
CATACAGCTTGGATCCAGGCACTGAATGGGAGGCAATGAGAGTGGCTCCAGCCTCCTCAA
CCATATGACAACTAGAGCAGCACTGTCTTAGAAGATGCTTCTTGCTTTGGCCAAGTCATA
TTCAGTCTGCCAGACTCTGGAATTTGTGTCTACAAATCCTTGCTCAGAGGAAGTGGATGA
TGTCAGAGTGGACAGAGGCCTACAGTGGGTTGAAGTGACTTCCTAGATCTTGGCTTCATG
ACAATCAGGCATCAGCAAGTCCTGCTGCCACCTGCTCTAACTCTCAGAGTCCCTCAGCCC
ATCATGGGCAACTTGAGAGCCACCGTCAAGGAGTGGACTAGAGGAAAAGCCTGCTTATCA
GGGAACCTCTCATTTCCCCTGCCCCAGCTGCACTACTGAAGTGTAACTGCCGGACATGTT
TAATAAAGTGGTTAATTGATTTTATATCAAAGTAGAGAGGATGGCAATGGGAGACCCAGT
CCTCATGACTAAACAGCTTTTCAATCCCTTTCTCTAAGAAAAGCTATGAGATCTTACATG
TAATTTAAAGTTAAGCAGTTTGGTGTAAAGGAAGTTAGGAGGCAATATTTACATCTGCAG
GTATGTGATATACTTTTGCTTGTGTTCCAGTTTAGGTCATTTGTGTCCATTTTCAAATGA
TTTACTTGAAGAGCCATTGCACTGACTTGATGTTCAGCACGATGGGCTTCTTTGATAAAA
TGAAACCTACATTTTCTCTACTGTTTCCCTGGGCCTCCTACTCTTCAATTCTTGCTAAAA
ATTTTTGCAACCCAGCAAAATAACTCAACAAAATAACCCAACAAAATAACTCAACAAAAA
TCCTGGAGAAGTAGTCTTGTAAAAGAAAAAGGAAATCACAAGTCAATTAGGACTCTTGTT
TCTCTATAACGCAAGTTTATGGAATCCATTCTGGAGTGCAGAGACTTCATGGTGCAAGTT
CCAAACTACAGAAATGATTCGTTCTCAAAGATTAAAGAAAAGGACTGATATTTCCTTTTG
AAGGAATCTTGATTTTTTAAAAAAAAATCATTTAAATTTAAATTTCAAATGGACAAATTC
AAGATCTTATTAATAGTTCAATATTAAAAAATAAAAATTCCTGATTTAAAATTAAATAAA
TTATTTTCTCAGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGGCGGGCCGGAGCGCAGGCGGCACACCCCGCCCCGGCACGCCCTGCCGAGCTCAGG
AGCACGCCGCGCGCCACTGTTCCCTCAGCCGAGGACGCCGCCGGGGGGCCGGGAGCCGAG
GTGTGGGCCATCCCCGAGCGCACCCAGCTTCTGCCGATCAGGAGTTGGAACGCAGCACCT
TCCCTTCCTCCCAGCCCTGCCTCCTTCTGCAGAGCAGAGCTCACTAGAACTTGTTTCGCC
TTTTACTCTGGGGGGAGAGAAGCAGAGGATGAGGAGAAAATAATGAATGTCAAAGGAAGA
GTGGTTCTGTCAATGCTGCTTGTCTCAACTGTAATGGTTGTGTTTTGGGAATACATCAAC
AGAAACCCAGAAGTTGGCAGCAGTGCTCAGAGGGGCTGGTGGTTTCCGAGCTGGTTTAAC
AATGGGACTCACAGTTACCACGAAGAAGAAGACGCTATAGGCAACGAAAAGGAACAAAGA
AAAGAAGACAACAGAGGAGAGCTTCCGCTAGTGGACTGGTTTAATCCTGAGAAACGCCCA
GAGGTCGTGACCATAACCAGATGGAAGGCTCCAGTGGTATGGGAAGGCACTTACAACAGA
GCCGTCTTAGATAATTATTATGCCAAACAGAAAATTACCGTGGGCTTGACGGTTTTTGCT
GTCGGAAGATACATTGAGCATTACTTGGAGGAGTTCTTAATATCTGCAAATACATACTTC
ATGGTTGGCCACAAAGTCATCTTTTACATCATGGTGGATGATATCTCCAGGATGCCTTTG
ATAGAGCTGGGTCCTCTGCGTTCCTTTAAAGTGTTTGAGATCAAGTCCGAGAAGAGGTGG
CAAGACATCAGCATGATGCGCATGAAGACCATCGGGGAGCACATCCTGGCCCACATCCAG
CACGAGGTGGACTTCCTCTTCTGCATGGACGTGGATCAGGTCTTCCAAAACAACTTTGGG
GTGGAGACCCTGGGCCAGTCGGTGGCTCAGCTACAGGCCTGGTGGTACAAGGCACATCCT
GACGAGTTCACCTACGAGAGGCGGAAGGAGTCCGCAGCCTACATTCCGTTTGGCCAGGGG
GATTTTTATTACCACGCAGCCATTTTTGGGGGAACACCCACTCAGGTTCTAAACATCACT
CAGGAGTGCTTCAAGGGAATCCTCCAGGACAAGGAAAATGACATAGAAGCCGAGTGGCAT
GATGAAAGCCATCTAAACAAGTATTTCCTTCTCAACAAACCCACTAAAATCTTATCCCCA
GAATACTGCTGGGATTATCATATAGGCATGTCTGTGGATATTAGGATTGTCAAGATAGCT
TGGCAGAAAAAAGAGTATAATTTGGTTAGAAATAACATCTGACTTTAAATTGTGCCAGCA
GTTTTCTGAATTTGAAAGAGTATTACTCTGGCTACTTCCTCAGAGAAGTAGCACTTAATT
TTAACTTTTAAAAAAATACTAACAAAATACCAACACAGTAAGTACATATTATTCTTCCTT
GCAACTTTGAGCCTTGTCAAATGGGAGAATGACTCTGTAGTAATCAGATGTAAATTCCCA
ATGATTTCTTATCTGTTCTGGGTTGAGGGGGTATATACTATTAACTGAACCAAAAAAAAA
AATTGTCATAGGCAAAGAAAAAGTCAGAGACACTCTACATGTCATACTGGAGAAAAGTAT
GCAAAGGGAAGTGTTTGGCAACAAAATAAGATTGGGAGGGGTCGTCCTCTTGATTTTAGC
GTCTTCCTGTCTCTGCTAAGTCTAAAGCAACAGAGTTGCTTTGCAGCAGGAGATCAGAGT
CTACCTTAGCAATCCTCAGATGATTTCAACAGCAGAGGACTTCAGGTTATTTGAAGTCCA
TGTCCTTTTCGCATCAGGGTTTTGTTTGGCTTCTGCGCAGATACTGATCAAGATTCCCAA
TGGTGAATGTTGGGAGTTACAGGGAATCCGAATGAACCAATGGGAGCTCAGCACGAAATA
AAAGCACAGCTTCTAAGTAAGTTTGCCATGAAATAGCGAAGACAGATTGGAAAGAGAGGG
GGCTGATCACTGTGGGGCAATGCCATTTCTAAGAGACACAGGGCATGGAGTTGGCATGTA
CATACAGCTTGGATCCAGGCACTGAATGGGAGGCAATGAGAGTGGCTCCAGCCTCCTCAA
CCATATGACAACTAGAGCAGCACTGTCTTAGAAGATGCTTCTTGCTTTGGCCAAGTCATA
TTCAGTCTGCCAGACTCTGGAATTTGTGTCTACAAATCCTTGCTCAGAGGAAGTGGATGA
TGTCAGAGTGGACAGAGGCCTACAGTGGGTTGAAGTGACTTCCTAGATCTTGGCTTCATG
ACAATCAGGCATCAGCAAGTCCTGCTGCCACCTGCTCTAACTCTCAGAGTCCCTCAGCCC
ATCATGGGCAACTTGAGAGCCACCGTCAAGGAGTGGACTAGAGGAAAAGCCTGCTTATCA
GGGAACCTCTCATTTCCCCTGCCCCAGCTGCACTACTGAAGTGTAACTGCCGGACATGTT
TAATAAAGTGGTTAATTGATTTTATATCAAAGTAGAGAGGATGGCAATGGGAGACCCAGT
CCTCATGACTAAACAGCTTTTCAATCCCTTTCTCTAAGAAAAGCTATGAGATCTTACATG
TAATTTAAAGTTAAGCAGTTTGGTGTAAAGGAAGTTAGGAGGCAATATTTACATCTGCAG
GTATGTGATATACTTTTGCTTGTGTTCCAGTTTAGGTCATTTGTGTCCATTTTCAAATGA
TTTACTTGAAGAGCCATTGCACTGACTTGATGTTCAGCACGATGGGCTTCTTTGATAAAA
TGAAACCTACATTTTCTCTACTGTTTCCCTGGGCCTCCTACTCTTCAATTCTTGCTAAAA
ATTTTTGCAACCCAGCAAAATAACTCAACAAAATAACCCAACAAAATAACTCAACAAAAA
TCCTGGAGAAGTAGTCTTGTAAAAGAAAAAGGAAATCACAAGTCAATTAGGACTCTTGTT
TCTCTATAACGCAAGTTTATGGAATCCATTCTGGAGTGCAGAGACTTCATGGTGCAAGTT
CCAAACTACAGAAATGATTCGTTCTCAAAGATTAAAGAAAAGGACTGATATTTCCTTTTG
AAGGAATCTTGATTTTTTAAAAAAAAATCATTTAAATTTAAATTTCAAATGGACAAATTC
AAGATCTTATTAATAGTTCAATATTAAAAAATAAAAATTCCTGATTTAAAATTAAATAAA
TTATTTTCTCAGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|609567|gb|AAA58775.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|609567|gb|AAA58775.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               826-2822, - strand, RNAz p=0.988972
               

               
               1106-1225, - strand, RNAz p=0.624892
               

               
               1266-1425, + strand, RNAz p=0.981473

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               826-2822, - strand, RNAz p=0.988972
               

               
               1106-1225, - strand, RNAz p=0.624892
               

               
               1266-1425, + strand, RNAz p=0.981473

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-162, gnl|bosTau2|chr11 (72389140-72389295)
               

               
               1-162, gnl|Hg17|chr9 (121341642-121341482)
               


               
               667-2387, gnl|bosTau2|chr11 (72464637-72466367)
               

               
               667-2387, gnl|Hg17|chr9 (121289431-121287680)
               

               
               667-2387, gnl|Mm7|chr2 (35410115-35408502)
               


               
               2457-3251, gnl|bosTau2|chr11 (72466397-72467166)
               

               
               2457-3251, gnl|Hg17|chr9 (121287650-121286825)
               

               
               2457-3251, gnl|Mm7|chr2 (35408455-35407495)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-162, gnl|bosTau2|chr11 (72389140-72389295)
               

               
               1-162, gnl|Hg17|chr9 (121341642-121341482)
               


               
               667-2387, gnl|bosTau2|chr11 (72464637-72466367)
               

               
               667-2387, gnl|Hg17|chr9 (121289431-121287680)
               

               
               667-2387, gnl|Mm7|chr2 (35410115-35408502)
               


               
               2457-3251, gnl|bosTau2|chr11 (72466397-72467166)
               

               
               2457-3251, gnl|Hg17|chr9 (121287650-121286825)
               

               
               2457-3251, gnl|Mm7|chr2 (35408455-35407495)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

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               liv (1.17027)
               

               
               thg (0.887536)
               

               
               cut (0.849618)
               

               
               pla (0.802032)
               

               
               sag (0.730861)
               

               
               spl (0.715922)
               

               
               fat (0.58971)
               

               
               ldo (0.582016)
               

               
               kid (0.518941)
               

               
               ova (0.516529)
               

               
               sug (0.509165)
               

               
               bla (0.497389)
               

               
               hea (0.408998)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (1.17027)
               

               
               thg (0.887536)
               

               
               cut (0.849618)
               

               
               pla (0.802032)
               

               
               sag (0.730861)
               

               
               spl (0.715922)
               

               
               fat (0.58971)
               

               
               ldo (0.582016)
               

               
               kid (0.518941)
               

               
               ova (0.516529)
               

               
               sug (0.509165)
               

               
               bla (0.497389)
               

               
               hea (0.408998)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	826-2822, - strand, RNAz p=0.988972
	1106-1225, - strand, RNAz p=0.624892
	1266-1425, + strand, RNAz p=0.981473

	1-162, gnl\|bosTau2\|chr11 (72389140-72389295)
	1-162, gnl\|Hg17\|chr9 (121341642-121341482)

	667-2387, gnl\|bosTau2\|chr11 (72464637-72466367)
	667-2387, gnl\|Hg17\|chr9 (121289431-121287680)
	667-2387, gnl\|Mm7\|chr2 (35410115-35408502)

	2457-3251, gnl\|bosTau2\|chr11 (72466397-72467166)
	2457-3251, gnl\|Hg17\|chr9 (121287650-121286825)
	2457-3251, gnl\|Mm7\|chr2 (35408455-35407495)

	liv (1.17027)
	thg (0.887536)
	cut (0.849618)
	pla (0.802032)
	sag (0.730861)
	spl (0.715922)
	fat (0.58971)
	ldo (0.582016)
	kid (0.518941)
	ova (0.516529)
	sug (0.509165)
	bla (0.497389)
	hea (0.408998)
	mgm (0.360685)
	gul (0.355177)
	fty (0.351679)
	rec (0.346141)
	tbr (0.308356)
	sme (0.305437)
	isp (0.300752)
	lin (0.291206)
	csk (0.281492)
	che (0.272628)
	ret (0.257467)
	tra (0.246184)
	mgp (0.230681)
	cty (0.20816)
	aor (0.195274)
	ill (0.175593)
	sin (0.174948)
	nco (0.161734)
	bfe (0.149858)
	nca (0.136874)
	eep (0.122564)
	pgl (0.118483)
	med (0.116252)
	cbl (0.114797)
	jej (0.0989218)