Non-Coding RNA Search

Ss1.1-Pig4-TMW8033H01.3

Sequence:


               
               CTCATTTTAATAAAACCTGCCAGTTACTAAACTGTAGCTTCATAAGTTCTATAATAAAGT
CTCATCTTGGCATTCTGCGCAAGGTGAAAAGCTCAGCTTTCTCTAGCAGAGAAATTCTTC
TGGCTCCAGTCGCAGAAACCTCTTGACGGCCTGAATGAAGGTTGAAGAATTGTGAACCTT
CCCTGACCTGTTTGGATGAAGCTCTTTTCAGTTAAGCCAAGCCAGCTTATAGTTTGTGAT
GGACTTAGGGGTATTTGGGTGTAGAAATCATAAACATAGCATTTGTGTTCAGCGCGTCAA
GCCTAGTCTTTAGACCAGATGGACAGGTTAGCTCAGCGCCTCCTAGGGACACTGAATGGG
CCCAGTTCTGCTGTGGAAATGATGTTTCCTTGGGGTCACGTGTCTGCTGGCAAAATTTGC
AGTAGTGTCAGTTCTCATACGTAATTTTAAGATTTATAAAATTGAGCCACGTCACCTGCC
TGACTTGTACTGCCCACCGGTACGAGTCTGGAATTGTGGACGATGGTACGGTCAAGTGCA
AACACTGAGCAGGACGCCAAGCAGACACCAGATAGAAATACTTGGCGCCGCGAATCCGGC
GCAGGAAGTGCTTCCCGAAGGTTCGTGTCCGGTGTTGTGTTCCTCGCCTGCCCCAGCGCT
GCATGTGACTTACCCGCGGCGGCACCTGCCGGTCGTGCCCCATGGTCTCGCGGTCACCGC
GACCACACGAGAGCGCGCTGTGACCCTGCGGGGGAAGACGCGCTCGGCATTTCTTTGCAT
CCATGGACCTTGTTTGGAGACATAAGGAATATTCTGACCCTTTTTAAAAAAGGATTTTCT
CATGTTTTTATTTAACATAAATAAAAGAGTAACGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATTTTAATAAAACCTGCCAGTTACTAAACTGTAGCTTCATAAGTTCTATAATAAAGT
CTCATCTTGGCATTCTGCGCAAGGTGAAAAGCTCAGCTTTCTCTAGCAGAGAAATTCTTC
TGGCTCCAGTCGCAGAAACCTCTTGACGGCCTGAATGAAGGTTGAAGAATTGTGAACCTT
CCCTGACCTGTTTGGATGAAGCTCTTTTCAGTTAAGCCAAGCCAGCTTATAGTTTGTGAT
GGACTTAGGGGTATTTGGGTGTAGAAATCATAAACATAGCATTTGTGTTCAGCGCGTCAA
GCCTAGTCTTTAGACCAGATGGACAGGTTAGCTCAGCGCCTCCTAGGGACACTGAATGGG
CCCAGTTCTGCTGTGGAAATGATGTTTCCTTGGGGTCACGTGTCTGCTGGCAAAATTTGC
AGTAGTGTCAGTTCTCATACGTAATTTTAAGATTTATAAAATTGAGCCACGTCACCTGCC
TGACTTGTACTGCCCACCGGTACGAGTCTGGAATTGTGGACGATGGTACGGTCAAGTGCA
AACACTGAGCAGGACGCCAAGCAGACACCAGATAGAAATACTTGGCGCCGCGAATCCGGC
GCAGGAAGTGCTTCCCGAAGGTTCGTGTCCGGTGTTGTGTTCCTCGCCTGCCCCAGCGCT
GCATGTGACTTACCCGCGGCGGCACCTGCCGGTCGTGCCCCATGGTCTCGCGGTCACCGC
GACCACACGAGAGCGCGCTGTGACCCTGCGGGGGAAGACGCGCTCGGCATTTCTTTGCAT
CCATGGACCTTGTTTGGAGACATAAGGAATATTCTGACCCTTTTTAAAAAAGGATTTTCT
CATGTTTTTATTTAACATAAATAAAAGAGTAACGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-160, + strand, RNAz p=0.90601

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-160, + strand, RNAz p=0.90601

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032905, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032905, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-876, gnl|bosTau2|chr13 (13064746-13065635)
               

               
               5-876, gnl|Hg17|chr10 (6197919-6198798)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-876, gnl|bosTau2|chr13 (13064746-13065635)
               

               
               5-876, gnl|Hg17|chr10 (6197919-6198798)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ldo (0.0970026)

	5-876, gnl\|bosTau2\|chr13 (13064746-13065635)
	5-876, gnl\|Hg17\|chr10 (6197919-6198798)

	hea (0.204499)
	fcc (0.197785)
	eye (0.170503)
	fhi (0.169578)
	cje (0.165235)
	isp (0.150376)
	lnt (0.142308)
	che (0.136314)
	pla (0.133672)
	ldo (0.0970026)