Ss1.1-Pig4-TMW8033H02.3
|
CCGGAGCCATGATCACTAAAATACTTAAAGTACTGTGAAGTTTAAAGACAGAAGAAACAT
AGGAGGGATAACGCACAAAAACAAAGGCGTTTGTGATGAATATCCTACATTACGTGAACA
CAATTCTCCCCCTTCTGTTAAGACTATAAACTACACTGTATGAGTATGTGTACTGCATGT
TTACATAATACAGTTTAATTTTGAAGGGTTATTTTAAAAGTATGTTTATTTATAATACCT
AACAAGCTGTAAATATTGTATACTATTGATTTTTAATTTTATATAAGCAATTTTTTAATT
TCCAATTCATGTACAAATCTCATTGTGTATATAGCATAATTTCCTGGAGAACATAAATTT
TGCAGTGGATTTTAATTATTTTAATTGTGGTAAGCATCAGGTTAGCCTTAGAAATGTTGA
TTTTTATTTTATTTTTCACTACTCATTTTCTTCAAAGGGCAGCAATAAACATATGCAAGT
TATTTTTGACTATAGAAAGTTGGTCTGCAAAGATAAGATCTGGGTTCCAACTCATTGCTT
TAAAGAAAAGATGCACAACTAACATCATCCACTGTCTAATCCCAGGGCCATTTCTGAGGT
CCATGTGTGTCTCTCCTCTTTGTAACATACAGGGTGAACTCTTTACTGATACAAACAGGA
CAACTGTTAAAAGTGAATCCAGCACTTAAATGTCATTACACAGAATTTATTGGATTAAAA
ATTTGTAATATACAGTATTTTAATAACGTTTCTGTATTCTATTTCATGCACTTATATATA
AATAAACCTGTCTTTAAAAGCTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGGAGCCATGATCACTAAAATACTTAAAGTACTGTGAAGTTTAAAGACAGAAGAAACAT
AGGAGGGATAACGCACAAAAACAAAGGCGTTTGTGATGAATATCCTACATTACGTGAACA
CAATTCTCCCCCTTCTGTTAAGACTATAAACTACACTGTATGAGTATGTGTACTGCATGT
TTACATAATACAGTTTAATTTTGAAGGGTTATTTTAAAAGTATGTTTATTTATAATACCT
AACAAGCTGTAAATATTGTATACTATTGATTTTTAATTTTATATAAGCAATTTTTTAATT
TCCAATTCATGTACAAATCTCATTGTGTATATAGCATAATTTCCTGGAGAACATAAATTT
TGCAGTGGATTTTAATTATTTTAATTGTGGTAAGCATCAGGTTAGCCTTAGAAATGTTGA
TTTTTATTTTATTTTTCACTACTCATTTTCTTCAAAGGGCAGCAATAAACATATGCAAGT
TATTTTTGACTATAGAAAGTTGGTCTGCAAAGATAAGATCTGGGTTCCAACTCATTGCTT
TAAAGAAAAGATGCACAACTAACATCATCCACTGTCTAATCCCAGGGCCATTTCTGAGGT
CCATGTGTGTCTCTCCTCTTTGTAACATACAGGGTGAACTCTTTACTGATACAAACAGGA
CAACTGTTAAAAGTGAATCCAGCACTTAAATGTCATTACACAGAATTTATTGGATTAAAA
ATTTGTAATATACAGTATTTTAATAACGTTTCTGTATTCTATTTCATGCACTTATATATA
AATAAACCTGTCTTTAAAAGCTTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
19-804, gnl|bosTau2|chr23 (34328171-34327387) |
|
19-804, gnl|canFam2|chr35 (14192783-14193642) |
|
19-804, gnl|dasNov1|scaffold_1931 (82386-83242) |
|
19-804, gnl|echTel1|scaffold_285875 (67454-68304) |
|
19-804, gnl|hg17|chr6 (11690941-11691798) |
|
19-804, gnl|Hg17|chr6 (11690951-11691742) |
|
19-804, gnl|loxAfr1|scaffold_86715 (7407-6557) |
|
19-804, gnl|mm7|chr13 (41081099-41081957) |
|
19-804, gnl|Mm7|chr13 (41081109-41081894) |
|
19-804, gnl|monDom2|scaffold_3 (98704585-98705461) |
|
19-804, gnl|oryCun1|scaffold_187974 (36473-35637) |
|
19-804, gnl|panTro1|chr5 (11968891-11969753) |
|
19-804, gnl|rheMac2|chr4 (11547224-11548084) |
|
19-804, gnl|rn3|chr17 (29021886-29021031) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
19-804, gnl|bosTau2|chr23 (34328171-34327387) |
|
19-804, gnl|canFam2|chr35 (14192783-14193642) |
|
19-804, gnl|dasNov1|scaffold_1931 (82386-83242) |
|
19-804, gnl|echTel1|scaffold_285875 (67454-68304) |
|
19-804, gnl|hg17|chr6 (11690941-11691798) |
|
19-804, gnl|Hg17|chr6 (11690951-11691742) |
|
19-804, gnl|loxAfr1|scaffold_86715 (7407-6557) |
|
19-804, gnl|mm7|chr13 (41081099-41081957) |
|
19-804, gnl|Mm7|chr13 (41081109-41081894) |
|
19-804, gnl|monDom2|scaffold_3 (98704585-98705461) |
|
19-804, gnl|oryCun1|scaffold_187974 (36473-35637) |
|
19-804, gnl|panTro1|chr5 (11968891-11969753) |
|
19-804, gnl|rheMac2|chr4 (11547224-11548084) |
|
19-804, gnl|rn3|chr17 (29021886-29021031) |
|
tes (0.207814) |
|
fco (0.157208) |
|
liv (0.146284) |
|
ret (0.128733) |
|
tes (0.207814) |
|
fco (0.157208) |
|
liv (0.146284) |
|
ret (0.128733) |
