Ss1.1-Pig4-TMW8033H05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGTGGAGCAGCGTAAAGGCAGGGCTGTAGCTGGACCTCGGTGGCGGTCGGGGTGTACTC TGTCACTTTCTGCCGGACTCCGAGAGTGTGGTAGCCTCCTTTTGGGGTGAGGACCGCGCG GCTGCAGCATGCCTCACAGGAAGAAAAGGCCGTTTATAGAGAAGAAGAAAGCTGTGTCTT TTCACCTGGTCCACCGGAGCCAACGAGATCCTTTAGCAGCAGATGAGACTGCACCCCAGA GGGTTCTGTTGCCTACACAGAAAATAAAAGATGAAGAAAGGCGAGCAGAGCAGAGGAAGT ATGGCGTGTTCTTTGATGATGACTATGACTACCTGCAGCACCTGAAGGAACCATATGGGC CCTCGGAGCTCATTCCCACAAGTACTTTCAGTGCACTCAGCGGGGGAGATGGGAAAGAAG AAACTTCAGTAACTTCAGCCACTGCAATTAAGTTGCCTTCGTCAGTGTTTGCATCAGAGT TTGAAGAAGATGTTGGATTGTTAAATAAAGCAGCTCCTGTTTCAGGACCTCGGCTGGATT TTGATCCTGACATTATTGCAGCTCTTGATGATGATTTTGATTTTGAGAATCCAGATAATT TGCTTGAAGATGATTTTATTCTTCAGGCTAATAAGCCAACAGAAGAGGAAGAGGGGATGG AGATACAGAAATCTGATGCGGGAGATGACAGTGAGTGGGAAGATGTGGATGATGAGAAGG AAAACGGTAGTGATGACGATAACTATGACCCTGCCGGCTCATCAGACGAGGATACGTCTG CCCCTGGGAAGCCTCTTGGGGCTGTAGAAAATCACTTGTTCTGGGAGGAGGAAACAAAAA GTCGCTTTACAGATTATTCTATGACATCCTCAGTCATGAGGAGAAATGAACAGCTGACCC TGCATGATGAGAGATTTGAGAAGTTTTACGAGCAGTATGATGATGATGAAATTGGAGCTC TGGATAATGCTGAATTGGAAGGTTCCATTCAAGTAGATGGCAGTCGCTTAGAGAAAATTT TGAATGACTACTATAAAGAGAAGGCAGAGAATTGTATAAAACTGAATACTCTTGAACCCT TCGAGGATCAGGGCCTGCCAGTGAATGAACTTGAGGGGTCTGAGGAAGAAGAGATTGTTA CTGTAGTTCTTGAAGAAGCCAAAGAGAAGTGGGATTGTGAATCTATATGTAGTACATACT CAAATTTATATAACCATCCACAGCTTATCAAGTATCAACCGAAGCCCAAACAAATCCGAC TGTCTTCTAAAACAGGAATACCTCTGGATGTCTTACCTAAGAAAGGACTCACAGCAAAGC AAGTTGAACGAATGCAGATGATTAATGACAGTGATCTGCCTAAGGTGTCAACCCAACCAC GTTCTAAAAATGAAAGCAAAGAAGATAAAAGAGCAAGAAAACAAGCTATAAAAGAAGAGC GCAGGGAACGGAGAGTGGAGAAGAAAGCTAACAAATTAGCCTTCAAACTGGAGAAGAGAA GGCAGGAGAAAGAGCTTCTGAACTTGAAGAAAAATGTTGAGGGTCTAAAGCTATGACAGC GGAACATGAGGATAAGATGCATTCCTCCTTAAGGGCTCCTTGTTATGTTCAGTAATGAAG GAGGATCTTCAAAGAGATAGAGCTGTTTGATCTGCCGTTTTTACAGGCAGGTATTGAAAA GAAAACAATACAGTGTTTATACCAGCAAGTTTTCTCTGCCAGCTGTCTGGTAAATATGGT AATATTTTAAAATTTAGTATTATACGCTTACATTTTCTCTGAAATAAATGACTTCATGTA CATGAAATGTTTGGATAAATTAAAGGAAATGTCTTCATAACCTGGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGTGGAGCAGCGTAAAGGCAGGGCTGTAGCTGGACCTCGGTGGCGGTCGGGGTGTACTC TGTCACTTTCTGCCGGACTCCGAGAGTGTGGTAGCCTCCTTTTGGGGTGAGGACCGCGCG GCTGCAGCATGCCTCACAGGAAGAAAAGGCCGTTTATAGAGAAGAAGAAAGCTGTGTCTT TTCACCTGGTCCACCGGAGCCAACGAGATCCTTTAGCAGCAGATGAGACTGCACCCCAGA GGGTTCTGTTGCCTACACAGAAAATAAAAGATGAAGAAAGGCGAGCAGAGCAGAGGAAGT ATGGCGTGTTCTTTGATGATGACTATGACTACCTGCAGCACCTGAAGGAACCATATGGGC CCTCGGAGCTCATTCCCACAAGTACTTTCAGTGCACTCAGCGGGGGAGATGGGAAAGAAG AAACTTCAGTAACTTCAGCCACTGCAATTAAGTTGCCTTCGTCAGTGTTTGCATCAGAGT TTGAAGAAGATGTTGGATTGTTAAATAAAGCAGCTCCTGTTTCAGGACCTCGGCTGGATT TTGATCCTGACATTATTGCAGCTCTTGATGATGATTTTGATTTTGAGAATCCAGATAATT TGCTTGAAGATGATTTTATTCTTCAGGCTAATAAGCCAACAGAAGAGGAAGAGGGGATGG AGATACAGAAATCTGATGCGGGAGATGACAGTGAGTGGGAAGATGTGGATGATGAGAAGG AAAACGGTAGTGATGACGATAACTATGACCCTGCCGGCTCATCAGACGAGGATACGTCTG CCCCTGGGAAGCCTCTTGGGGCTGTAGAAAATCACTTGTTCTGGGAGGAGGAAACAAAAA GTCGCTTTACAGATTATTCTATGACATCCTCAGTCATGAGGAGAAATGAACAGCTGACCC TGCATGATGAGAGATTTGAGAAGTTTTACGAGCAGTATGATGATGATGAAATTGGAGCTC TGGATAATGCTGAATTGGAAGGTTCCATTCAAGTAGATGGCAGTCGCTTAGAGAAAATTT TGAATGACTACTATAAAGAGAAGGCAGAGAATTGTATAAAACTGAATACTCTTGAACCCT TCGAGGATCAGGGCCTGCCAGTGAATGAACTTGAGGGGTCTGAGGAAGAAGAGATTGTTA CTGTAGTTCTTGAAGAAGCCAAAGAGAAGTGGGATTGTGAATCTATATGTAGTACATACT CAAATTTATATAACCATCCACAGCTTATCAAGTATCAACCGAAGCCCAAACAAATCCGAC TGTCTTCTAAAACAGGAATACCTCTGGATGTCTTACCTAAGAAAGGACTCACAGCAAAGC AAGTTGAACGAATGCAGATGATTAATGACAGTGATCTGCCTAAGGTGTCAACCCAACCAC GTTCTAAAAATGAAAGCAAAGAAGATAAAAGAGCAAGAAAACAAGCTATAAAAGAAGAGC GCAGGGAACGGAGAGTGGAGAAGAAAGCTAACAAATTAGCCTTCAAACTGGAGAAGAGAA GGCAGGAGAAAGAGCTTCTGAACTTGAAGAAAAATGTTGAGGGTCTAAAGCTATGACAGC GGAACATGAGGATAAGATGCATTCCTCCTTAAGGGCTCCTTGTTATGTTCAGTAATGAAG GAGGATCTTCAAAGAGATAGAGCTGTTTGATCTGCCGTTTTTACAGGCAGGTATTGAAAA GAAAACAATACAGTGTTTATACCAGCAAGTTTTCTCTGCCAGCTGTCTGGTAAATATGGT AATATTTTAAAATTTAGTATTATACGCTTACATTTTCTCTGAAATAAATGACTTCATGTA CATGAAATGTTTGGATAAATTAAAGGAAATGTCTTCATAACCTGGAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 131-262, gnl|bosTau2|chr9 (47848488-47848357) | |
| 131-262, gnl|Hg17|chr6 (144207315-144207446) | |
| 131-262, gnl|Mm7|chr10 (12892597-12892466) | |
| 264-438, gnl|bosTau2|chr9 (47847493-47847319) | |
| 264-438, gnl|canFam2|chr1 (38406023-38406135) | |
| 264-438, gnl|danRer3|chr1 (52687111-52687223) | |
| 264-438, gnl|dasNov1|scaffold_37450 (40782-40894) | |
| 264-438, gnl|echTel1|scaffold_175736 (6628-6516) | |
| 264-438, gnl|fr1|chrUn (150246185-150246073) | |
| 264-438, gnl|galGal2|chr3 (51247531-51247419) | |
| 264-438, gnl|hg17|chr6 (144208882-144208994) | |
| 264-438, gnl|Hg17|chr6 (144208881-144209055) | |
| 264-438, gnl|loxAfr1|scaffold_144085 (125-228) | |
| 264-438, gnl|mm7|chr10 (12891103-12890991) | |
| 264-438, gnl|Mm7|chr10 (12891102-12890931) | |
| 264-438, gnl|monDom2|scaffold_0 (63669422-63669310) | |
| 264-438, gnl|oryCun1|scaffold_204255 (332400-332512) | |
| 264-438, gnl|panTro1|chr5 (147126384-147126496) | |
| 264-438, gnl|rheMac2|chr4 (119824858-119824746) | |
| 264-438, gnl|rn3|chr1 (7966926-7966814) | |
| 264-438, gnl|tetNig1|chr18 (9994903-9994806) | |
| 668-923, gnl|bosTau2|chr9 (47838168-47837913) | |
| 668-923, gnl|canFam2|chr1 (38412393-38412653) | |
| 668-923, gnl|danRer3|chr1 (52693273-52693478) | |
| 668-923, gnl|echTel1|scaffold_282495 (4089-4351) | |
| 668-923, gnl|fr1|chrUn (150245226-150245005) | |
| 668-923, gnl|galGal2|chr3 (51245154-51244906) | |
| 668-923, gnl|hg17|chr6 (144220590-144220846) | |
| 668-923, gnl|Hg17|chr6 (144220582-144220837) | |
| 668-923, gnl|loxAfr1|scaffold_15693 (8187-8448) | |
| 668-923, gnl|mm7|chr10 (12882879-12882629) | |
| 668-923, gnl|Mm7|chr10 (12882885-12882636) | |
| 668-923, gnl|monDom2|scaffold_0 (63665560-63665320) | |
| 668-923, gnl|panTro1|chr5 (147138755-147139011) | |
| 668-923, gnl|rheMac2|chr4 (119814041-119813785) | |
| 668-923, gnl|rn3|chr1 (7959879-7959632) | |
| 668-923, gnl|tetNig1|chr18 (9993998-9993781) | |
| 668-923, gnl|xenTro1|scaffold_259 (359107-359336) | |
| 1052-1194, gnl|bosTau2|chr9 (47834775-47834633) | |
| 1052-1194, gnl|Hg17|chr6 (144224934-144225076) | |
| 1052-1194, gnl|Mm7|chr10 (12880491-12880349) | |
| 1445-1841, gnl|bosTau2|chr9 (47833569-47833168) | |
| 1445-1841, gnl|Hg17|chr6 (144226246-144226637) | |
| 1445-1841, gnl|Mm7|chr10 (12879354-12878959) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 131-262, gnl|bosTau2|chr9 (47848488-47848357) | |
| 131-262, gnl|Hg17|chr6 (144207315-144207446) | |
| 131-262, gnl|Mm7|chr10 (12892597-12892466) | |
| 264-438, gnl|bosTau2|chr9 (47847493-47847319) | |
| 264-438, gnl|canFam2|chr1 (38406023-38406135) | |
| 264-438, gnl|danRer3|chr1 (52687111-52687223) | |
| 264-438, gnl|dasNov1|scaffold_37450 (40782-40894) | |
| 264-438, gnl|echTel1|scaffold_175736 (6628-6516) | |
| 264-438, gnl|fr1|chrUn (150246185-150246073) | |
| 264-438, gnl|galGal2|chr3 (51247531-51247419) | |
| 264-438, gnl|hg17|chr6 (144208882-144208994) | |
| 264-438, gnl|Hg17|chr6 (144208881-144209055) | |
| 264-438, gnl|loxAfr1|scaffold_144085 (125-228) | |
| 264-438, gnl|mm7|chr10 (12891103-12890991) | |
| 264-438, gnl|Mm7|chr10 (12891102-12890931) | |
| 264-438, gnl|monDom2|scaffold_0 (63669422-63669310) | |
| 264-438, gnl|oryCun1|scaffold_204255 (332400-332512) | |
| 264-438, gnl|panTro1|chr5 (147126384-147126496) | |
| 264-438, gnl|rheMac2|chr4 (119824858-119824746) | |
| 264-438, gnl|rn3|chr1 (7966926-7966814) | |
| 264-438, gnl|tetNig1|chr18 (9994903-9994806) | |
| 668-923, gnl|bosTau2|chr9 (47838168-47837913) | |
| 668-923, gnl|canFam2|chr1 (38412393-38412653) | |
| 668-923, gnl|danRer3|chr1 (52693273-52693478) | |
| 668-923, gnl|echTel1|scaffold_282495 (4089-4351) | |
| 668-923, gnl|fr1|chrUn (150245226-150245005) | |
| 668-923, gnl|galGal2|chr3 (51245154-51244906) | |
| 668-923, gnl|hg17|chr6 (144220590-144220846) | |
| 668-923, gnl|Hg17|chr6 (144220582-144220837) | |
| 668-923, gnl|loxAfr1|scaffold_15693 (8187-8448) | |
| 668-923, gnl|mm7|chr10 (12882879-12882629) | |
| 668-923, gnl|Mm7|chr10 (12882885-12882636) | |
| 668-923, gnl|monDom2|scaffold_0 (63665560-63665320) | |
| 668-923, gnl|panTro1|chr5 (147138755-147139011) | |
| 668-923, gnl|rheMac2|chr4 (119814041-119813785) | |
| 668-923, gnl|rn3|chr1 (7959879-7959632) | |
| 668-923, gnl|tetNig1|chr18 (9993998-9993781) | |
| 668-923, gnl|xenTro1|scaffold_259 (359107-359336) | |
| 1052-1194, gnl|bosTau2|chr9 (47834775-47834633) | |
| 1052-1194, gnl|Hg17|chr6 (144224934-144225076) | |
| 1052-1194, gnl|Mm7|chr10 (12880491-12880349) | |
| 1445-1841, gnl|bosTau2|chr9 (47833569-47833168) | |
| 1445-1841, gnl|Hg17|chr6 (144226246-144226637) | |
| 1445-1841, gnl|Mm7|chr10 (12879354-12878959) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| vin (0.665115) | |
| tes (0.415628) | |
| hea (0.408998) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| isp (0.300752) | |
| lin (0.291206) | |
| spl (0.286369) | |
| ssp (0.271039) | |
| mas (0.210305) | |
| sag (0.182715) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| cty (0.10408) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.665115) | |
| tes (0.415628) | |
| hea (0.408998) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| isp (0.300752) | |
| lin (0.291206) | |
| spl (0.286369) | |
| ssp (0.271039) | |
| mas (0.210305) | |
| sag (0.182715) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| cty (0.10408) |