Non-Coding RNA Search

Ss1.1-Pig4-TMW8033H07.3

Sequence:


               
               AAAAGTTCCTAGTTTCTAACAAAACACTTGCATAGTACTTACTTTGACAGTGATGCTTTA
AAGGAATAAAATTCTTTTTTTTAGAATGATATTCCTTTTTAAAAGATTCTAACTCAGAAT
GTTCACTTTAAACAAGTATGCCAGAACATAGACAGCTAAATGAATGTTACCCTGCATAAC
GATCATGCTGGAAAACTATTTCCTAATTCCAGCAGTCTACCGTTGCTCAGAACCTCTTGG
GTTTTGCTCTTTTAGAATTGCATTCAGAGCTAATTTGTCACACACTATTAACTTTATAAT
TACATATTGTTAAAAAAAACATTACCTATCTTGATTGTTTTATTGTTATCATTATTTGGT
ACCAAACGACTTTGGACTGTTTCCAAAAATTAAATCTATCTTTTAGGTAATAGTGGAAGT
ATGCACCTAGCTTTGAAGGCAATCCAAAAAGAGTTTTAAAGGTATTTTGAGCAGTGGTAG
CATAGTTAGGAGAATGAACTGTGGCCTTCCAAGGTGACTACCGTAATGGAGACGCAGCTC
ATTTGAATGTATTGAGTTTTGGATGTATGTTTCATTTAAAAAAAAAAACAGTTCACATTA
TTTTATAGTGTCAAAAGGAAGAACTAAGATTAAGGTAATTTCTTTGTTTTTTTCTATTGC
TTGTTATTATGTAAAAAGAAGAGAGTGGCAGTTCAGAAGGAAGACTGTTGTAACTGAAGA
ATGACAACCAAGAATTTTTGGTCATTAAATCAGATTTTATAAACAGTGGAAGGAGCATGG
ACTTAAAACAAGGCATGCTTATTTGGTTTTGTCAAATTTTTCGAAAATATGTGATATATA
TTTATACTAAAACTATATAATCATTACATTTAGGAGAGCAATCAGTTAATGTCTTTAGCA
GATTAATGCAGTATTAAATACAGGTGCAACTTGAAAATTGTAGAAAATTTGAAAGAAAAT
GATAGACAAAATTAATGTCTCTGGTAGGGAATAAAAAACTAAGATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGTTCCTAGTTTCTAACAAAACACTTGCATAGTACTTACTTTGACAGTGATGCTTTA
AAGGAATAAAATTCTTTTTTTTAGAATGATATTCCTTTTTAAAAGATTCTAACTCAGAAT
GTTCACTTTAAACAAGTATGCCAGAACATAGACAGCTAAATGAATGTTACCCTGCATAAC
GATCATGCTGGAAAACTATTTCCTAATTCCAGCAGTCTACCGTTGCTCAGAACCTCTTGG
GTTTTGCTCTTTTAGAATTGCATTCAGAGCTAATTTGTCACACACTATTAACTTTATAAT
TACATATTGTTAAAAAAAACATTACCTATCTTGATTGTTTTATTGTTATCATTATTTGGT
ACCAAACGACTTTGGACTGTTTCCAAAAATTAAATCTATCTTTTAGGTAATAGTGGAAGT
ATGCACCTAGCTTTGAAGGCAATCCAAAAAGAGTTTTAAAGGTATTTTGAGCAGTGGTAG
CATAGTTAGGAGAATGAACTGTGGCCTTCCAAGGTGACTACCGTAATGGAGACGCAGCTC
ATTTGAATGTATTGAGTTTTGGATGTATGTTTCATTTAAAAAAAAAAACAGTTCACATTA
TTTTATAGTGTCAAAAGGAAGAACTAAGATTAAGGTAATTTCTTTGTTTTTTTCTATTGC
TTGTTATTATGTAAAAAGAAGAGAGTGGCAGTTCAGAAGGAAGACTGTTGTAACTGAAGA
ATGACAACCAAGAATTTTTGGTCATTAAATCAGATTTTATAAACAGTGGAAGGAGCATGG
ACTTAAAACAAGGCATGCTTATTTGGTTTTGTCAAATTTTTCGAAAATATGTGATATATA
TTTATACTAAAACTATATAATCATTACATTTAGGAGAGCAATCAGTTAATGTCTTTAGCA
GATTAATGCAGTATTAAATACAGGTGCAACTTGAAAATTGTAGAAAATTTGAAAGAAAAT
GATAGACAAAATTAATGTCTCTGGTAGGGAATAAAAAACTAAGATATT

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               127-1008, gnl|bosTau2|chr11 (64388700-64387826)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-1008, gnl|bosTau2|chr11 (64388700-64387826)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               bfe (0.449573)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               ret (0.257467)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               ret (0.257467)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	bfe (0.449573)
	vin (0.332557)
	fco (0.314416)
	tbr (0.308356)
	sme (0.305437)
	ret (0.257467)
	gul (0.177588)
	mga (0.160205)
	isp (0.150376)
	fat (0.147427)
	ssp (0.13552)
	lyg (0.133103)
	kid (0.129735)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)
	jej (0.0989218)