Ss1.1-Pig4-TMW8033H11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACG AGATCGGGAAGCTCTTTGTGGGCGGTCTTGACTGGAGCACCACCCAAGAGACGCTGCGCA GCTACTTTTCCCAGTATGGCGAGGTCGTGGACTGCGTGATCATGAAAGACAAGACAACCA ACCAGTCTCGAGGCTTTGGGTTTGTCAAGTTCAAAGACCCGAACTGCGTGGGCACTGTGC TGGCCAGCAGACCACATACCCTCGACGGCCGAAATATCGACCCAAAGCCATGTACACCTC GTGGGATGCAGCCGGAGAGGACACGGCCGAAGGAAGGATGGCAGAAAGGACCCAGGAGTG ATAACAGTAAATCCAATAAGATATTTGTCGGTGGAATCCCTCACAACTGTGGTGAGACAG AGCTCAGGGAATACTTCAAGAAATTTGGAGTGGTCACAGAAGTGGTCATGATCTATGACG CGGAGAAGCAGAGGCCTCGAGGTTTTGGATTTATTACTTTCGAGGACGAACAATCAGTGG ACCAGGCTGTCAACATGCATTTTCACGACATCATGGGCAAAAAAGTGGAAGTTAAACGGG CCGAGCCTCGGGACAGCAAAAGCCAAGCGCCAGGACAGCCGGGTGCCAGCCAGTGGGGCA GCCGGGTCGTCCCCAATGCCGCCAACGGCTGGGCAGGCCAGCCCCCACCCACGTGGCAGC AAGGATACGGCCCGCAAGGAATGTGGGTGCCAGCAGGACAGGCAATAGGTGGCTACGGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACG AGATCGGGAAGCTCTTTGTGGGCGGTCTTGACTGGAGCACCACCCAAGAGACGCTGCGCA GCTACTTTTCCCAGTATGGCGAGGTCGTGGACTGCGTGATCATGAAAGACAAGACAACCA ACCAGTCTCGAGGCTTTGGGTTTGTCAAGTTCAAAGACCCGAACTGCGTGGGCACTGTGC TGGCCAGCAGACCACATACCCTCGACGGCCGAAATATCGACCCAAAGCCATGTACACCTC GTGGGATGCAGCCGGAGAGGACACGGCCGAAGGAAGGATGGCAGAAAGGACCCAGGAGTG ATAACAGTAAATCCAATAAGATATTTGTCGGTGGAATCCCTCACAACTGTGGTGAGACAG AGCTCAGGGAATACTTCAAGAAATTTGGAGTGGTCACAGAAGTGGTCATGATCTATGACG CGGAGAAGCAGAGGCCTCGAGGTTTTGGATTTATTACTTTCGAGGACGAACAATCAGTGG ACCAGGCTGTCAACATGCATTTTCACGACATCATGGGCAAAAAAGTGGAAGTTAAACGGG CCGAGCCTCGGGACAGCAAAAGCCAAGCGCCAGGACAGCCGGGTGCCAGCCAGTGGGGCA GCCGGGTCGTCCCCAATGCCGCCAACGGCTGGGCAGGCCAGCCCCCACCCACGTGGCAGC AAGGATACGGCCCGCAAGGAATGTGGGTGCCAGCAGGACAGGCAATAGGTGGCTACGGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 632-748, - strand, RNAz p=0.751981 | |
| 639-748, - strand, RNAz p=0.871142 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 632-748, - strand, RNAz p=0.751981 | |
| 639-748, - strand, RNAz p=0.871142 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 107-274, gnl|bosTau2|chr7 (29059224-29059057) | |
| 107-274, gnl|Hg17|chr19 (1369201-1369368) | |
| 107-274, gnl|Mm7|chr10 (80056737-80056904) | |
| 338-454, gnl|bosTau2|chr7 (29057393-29057278) | |
| 338-454, gnl|canFam2|chr20 (60565266-60565100) | |
| 338-454, gnl|danRer3|chr11 (3886728-3886614) | |
| 338-454, gnl|echTel1|scaffold_313265 (17191-17051) | |
| 338-454, gnl|fr1|chrUn (88616268-88616134) | |
| 338-454, gnl|galGal2|chrZ (19002628-19002458) | |
| 338-454, gnl|hg17|chr19 (1372121-1372288) | |
| 338-454, gnl|Hg17|chr19 (1372143-1372259) | |
| 338-454, gnl|mm7|chr10 (80059847-80059981) | |
| 338-454, gnl|Mm7|chr10 (80059859-80059975) | |
| 338-454, gnl|monDom2|scaffold_75 (5809332-5809164) | |
| 338-454, gnl|panTro1|chr20 (1447659-1447826) | |
| 338-454, gnl|rheMac2|chr19 (1190221-1190388) | |
| 338-454, gnl|rn3|chr7 (10945667-10945519) | |
| 338-454, gnl|tetNig1|chr1 (14758333-14758463) | |
| 338-454, gnl|xenTro1|scaffold_868 (78274-78428) | |
| 585-748, gnl|bosTau2|chr7 (29051252-29051089) | |
| 585-748, gnl|canFam2|chr20 (60557483-60557308) | |
| 585-748, gnl|danRer3|chr11 (3872975-3872804) | |
| 585-748, gnl|echTel1|scaffold_313265 (10768-10590) | |
| 585-748, gnl|fr1|chrUn (88611211-88611047) | |
| 585-748, gnl|galGal2|chrZ (18992205-18992036) | |
| 585-748, gnl|hg17|chr19 (1379829-1380004) | |
| 585-748, gnl|Hg17|chr19 (1379841-1380003) | |
| 585-748, gnl|loxAfr1|scaffold_65591 (15534-15707) | |
| 585-748, gnl|mm7|chr10 (80065303-80065478) | |
| 585-748, gnl|Mm7|chr10 (80065315-80065489) | |
| 585-748, gnl|monDom2|scaffold_75 (5798499-5798330) | |
| 585-748, gnl|panTro1|chr20 (1455992-1456166) | |
| 585-748, gnl|rheMac2|chr19 (1197916-1198091) | |
| 585-748, gnl|rn3|chr7 (10940303-10940128) | |
| 585-748, gnl|tetNig1|chr1 (14763136-14763301) | |
| 585-748, gnl|xenTro1|scaffold_868 (84963-85138) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 107-274, gnl|bosTau2|chr7 (29059224-29059057) | |
| 107-274, gnl|Hg17|chr19 (1369201-1369368) | |
| 107-274, gnl|Mm7|chr10 (80056737-80056904) | |
| 338-454, gnl|bosTau2|chr7 (29057393-29057278) | |
| 338-454, gnl|canFam2|chr20 (60565266-60565100) | |
| 338-454, gnl|danRer3|chr11 (3886728-3886614) | |
| 338-454, gnl|echTel1|scaffold_313265 (17191-17051) | |
| 338-454, gnl|fr1|chrUn (88616268-88616134) | |
| 338-454, gnl|galGal2|chrZ (19002628-19002458) | |
| 338-454, gnl|hg17|chr19 (1372121-1372288) | |
| 338-454, gnl|Hg17|chr19 (1372143-1372259) | |
| 338-454, gnl|mm7|chr10 (80059847-80059981) | |
| 338-454, gnl|Mm7|chr10 (80059859-80059975) | |
| 338-454, gnl|monDom2|scaffold_75 (5809332-5809164) | |
| 338-454, gnl|panTro1|chr20 (1447659-1447826) | |
| 338-454, gnl|rheMac2|chr19 (1190221-1190388) | |
| 338-454, gnl|rn3|chr7 (10945667-10945519) | |
| 338-454, gnl|tetNig1|chr1 (14758333-14758463) | |
| 338-454, gnl|xenTro1|scaffold_868 (78274-78428) | |
| 585-748, gnl|bosTau2|chr7 (29051252-29051089) | |
| 585-748, gnl|canFam2|chr20 (60557483-60557308) | |
| 585-748, gnl|danRer3|chr11 (3872975-3872804) | |
| 585-748, gnl|echTel1|scaffold_313265 (10768-10590) | |
| 585-748, gnl|fr1|chrUn (88611211-88611047) | |
| 585-748, gnl|galGal2|chrZ (18992205-18992036) | |
| 585-748, gnl|hg17|chr19 (1379829-1380004) | |
| 585-748, gnl|Hg17|chr19 (1379841-1380003) | |
| 585-748, gnl|loxAfr1|scaffold_65591 (15534-15707) | |
| 585-748, gnl|mm7|chr10 (80065303-80065478) | |
| 585-748, gnl|Mm7|chr10 (80065315-80065489) | |
| 585-748, gnl|monDom2|scaffold_75 (5798499-5798330) | |
| 585-748, gnl|panTro1|chr20 (1455992-1456166) | |
| 585-748, gnl|rheMac2|chr19 (1197916-1198091) | |
| 585-748, gnl|rn3|chr7 (10940303-10940128) | |
| 585-748, gnl|tetNig1|chr1 (14763136-14763301) | |
| 585-748, gnl|xenTro1|scaffold_868 (84963-85138) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ece (0.229305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| nmm (0.132802) | |
| eep (0.122564) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| nmm (0.132802) | |
| eep (0.122564) |