Non-Coding RNA Search

Ss1.1-Pig4-TMW8033H14.3

Sequence:


               
               AGTATTACAGAAATCAGCCTGGAGATCTAAAGCATGATGCTTTCTAGTCACTTGATGCTT
TTCTTAGCCAGATGAAACGCATCACCCAGGGCAAAAAAAAAAATTAAACCCGCTCTCCAC
GAGAGTTCCTTGCTAAACTTCTCTGTGAGCAAGGTCCAGAATTCTTGGTGGCGAAGAGAG
CTGGTTGGTGATGGAGGAGAGTGAGGGCGGGCTGGCAGGTGTCCATGAGGGTGGCCAGGG
CACGGTGTGAGCGGTGGGTTCTTGCTGATCACGCGCTAGTGGCTTATCACATCATGTGCC
ATTGGGATTCTATGAGGATGGACTTAATGCTTTTCTTTATCCATCTGGGCTTCAGTCCCC
CCAAAGAGAACACGCAGGCAAAGCTGAGCAGTGGTCACACCCAAAGATGGGCTAATCTCG
ATGAGAATGGCCATCACTGACTCACGACTCTTGAGCAGATTAAACTTCCTCACCGATTTT
GGTAATAAGTTGGGAAATGATGACTGAATTATGTCCCTCTGGTTTCATCCTATCCTCGGG
CAATGTCCCAGAGTGTAAGTCTAGGCCAGTGTCGGAGGGTTCTCTCTATTGGATGGGTCA
GCCTGTAGTAATGGCATAACTTCCAAAGTACACAAAATCTAATACTAATGGTGCAATAAT
TTATTGGTATGACTTCCACCTCAAAAGGTAAGTAACACAAACGTTTCAGGATTACAGTAT
ATATTATCAGGCTAGCATCTCTGCATTAAAAACAAGTTATAGCTCGGAGCTAGACAATGT
GATTTTTAGTGTCTGAAATGCATTAATTGTATGCGCCTGTCTCAGAAGACTGCATGTCTC
AAATTGGCATGTCCTGCATTTTCTGCAGCTCAATTCTGTAAACATAAAGTGTTTCATTCC
TAGAAATGCTATTAAAAAAGAAAAACAGGTTTATTGCATCATGAATCTCATTAACTCTCA
AAGAGAATAACAAATCTTAAACGGTAAGCCTGTGTGACCACACTAAGACCTTTTTTAAAA
AAACTATTCAGGATCATCACAATTCAGTATTTTTTCTGTATATGTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTATTACAGAAATCAGCCTGGAGATCTAAAGCATGATGCTTTCTAGTCACTTGATGCTT
TTCTTAGCCAGATGAAACGCATCACCCAGGGCAAAAAAAAAAATTAAACCCGCTCTCCAC
GAGAGTTCCTTGCTAAACTTCTCTGTGAGCAAGGTCCAGAATTCTTGGTGGCGAAGAGAG
CTGGTTGGTGATGGAGGAGAGTGAGGGCGGGCTGGCAGGTGTCCATGAGGGTGGCCAGGG
CACGGTGTGAGCGGTGGGTTCTTGCTGATCACGCGCTAGTGGCTTATCACATCATGTGCC
ATTGGGATTCTATGAGGATGGACTTAATGCTTTTCTTTATCCATCTGGGCTTCAGTCCCC
CCAAAGAGAACACGCAGGCAAAGCTGAGCAGTGGTCACACCCAAAGATGGGCTAATCTCG
ATGAGAATGGCCATCACTGACTCACGACTCTTGAGCAGATTAAACTTCCTCACCGATTTT
GGTAATAAGTTGGGAAATGATGACTGAATTATGTCCCTCTGGTTTCATCCTATCCTCGGG
CAATGTCCCAGAGTGTAAGTCTAGGCCAGTGTCGGAGGGTTCTCTCTATTGGATGGGTCA
GCCTGTAGTAATGGCATAACTTCCAAAGTACACAAAATCTAATACTAATGGTGCAATAAT
TTATTGGTATGACTTCCACCTCAAAAGGTAAGTAACACAAACGTTTCAGGATTACAGTAT
ATATTATCAGGCTAGCATCTCTGCATTAAAAACAAGTTATAGCTCGGAGCTAGACAATGT
GATTTTTAGTGTCTGAAATGCATTAATTGTATGCGCCTGTCTCAGAAGACTGCATGTCTC
AAATTGGCATGTCCTGCATTTTCTGCAGCTCAATTCTGTAAACATAAAGTGTTTCATTCC
TAGAAATGCTATTAAAAAAGAAAAACAGGTTTATTGCATCATGAATCTCATTAACTCTCA
AAGAGAATAACAAATCTTAAACGGTAAGCCTGTGTGACCACACTAAGACCTTTTTTAAAA
AAACTATTCAGGATCATCACAATTCAGTATTTTTTCTGTATATGTTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               817-924, + strand, RNAz p=0.87805

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               817-924, + strand, RNAz p=0.87805

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-424, gnl|bosTau2|chr6 (31043566-31043143)
               

               
               1-424, gnl|Hg17|chr4 (41541463-41541050)
               

               
               1-424, gnl|Mm7|chr5 (66411123-66410694)
               


               
               428-1062, gnl|bosTau2|chr6 (31043068-31042421)
               

               
               428-1062, gnl|Hg17|chr4 (41540964-41540344)
               

               
               428-1062, gnl|Mm7|chr5 (66410611-66410009)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-424, gnl|bosTau2|chr6 (31043566-31043143)
               

               
               1-424, gnl|Hg17|chr4 (41541463-41541050)
               

               
               1-424, gnl|Mm7|chr5 (66411123-66410694)
               


               
               428-1062, gnl|bosTau2|chr6 (31043068-31042421)
               

               
               428-1062, gnl|Hg17|chr4 (41540964-41540344)
               

               
               428-1062, gnl|Mm7|chr5 (66410611-66410009)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-424, gnl\|bosTau2\|chr6 (31043566-31043143)
	1-424, gnl\|Hg17\|chr4 (41541463-41541050)
	1-424, gnl\|Mm7\|chr5 (66411123-66410694)

	428-1062, gnl\|bosTau2\|chr6 (31043068-31042421)
	428-1062, gnl\|Hg17\|chr4 (41540964-41540344)
	428-1062, gnl\|Mm7\|chr5 (66410611-66410009)