Non-Coding RNA Search

Ss1.1-Pig4-TMW8033H21.3

Sequence:


               
               TCAGGTGTCTGCTCATTCAAAGTTTATACATTACAGAGTATAAATTTGACAGTGGAAACA
AAATTTTTTTTTCCATAAAAACCTGGTCAGGGTCATTTATATATTAGAACAGTTGGACAC
ATAGGTGTCCAATTTTTCCTTTCATTTAGACATTTGAGAGTCGGAGTGCAGTCATAATCT
TATAGGTGGTCATTTAAATTTCTTACATTTATGGTCCATAAAAACTTCAAGGCTGATAGA
TACTCTTGGTATTTCAGTTTTGACATTGCAGCTAGACGTTATTTCTGCCATAATTTCAAA
ATGGTGGAATAAATGACTTTCTCTTACCAAATCTGTTGGGTTTCAATGTTTAATAGAATA
ACCGCCTTTAAAATTGCCCTTAATTGAAAAGTAGTTAACATAGCTTAGTTGACTCAGTAG
TTTAATTTTAACTGATAAAAGTAACATAATTTCAATGTAGTAAATCTTTTTTTCCATAAG
AGGAAATGTAAAATTTCATTCTTTTAAAATTAAAGTTATAAAAATATGAGCTAAAAGTTC
TGAAAAGAATTGAAACTTAAGACTTTAAATTGAGAGTGGCATTTAATATTTAAAATACCT
GCTTATTCAATTTTTAGTTTAAACACACATCAGTTCTCTACTGGATTCTTTTTATACTTC
TCATTTATTTTAAAAACTACAGGTAAATATGTGAGAACACTAGAAGTGTCAGATTATCTA
TGGAGATGCCTTTTTTTTCTTTTAATTTGAACCTTTAATTTAAATCTTTATTCTGATGTA
ACATTTGAGGTTGATAACTATACTGAGTTATTCCTTCAGTTCCTTTGATAACCAAAGACG
TACAGTGGAAGCTGTCCCTCTTATTACTAGGAAATGCAGTCCTTCCAAAAAAAAAAAAAA
AATCAAGTTTCCTTTTCCTGCCTTCCATCCATTTATTGCCCATAATTTTCAAGAAAAGGT
AGGTATAGAAACACATGGGAAATGTGATGGTGAAACAATATTTATAAAAATGAGAACATG
TCCAAATGAATTCTGGTCTCCTCTTCAGAACTGGCCATTTAAGATGCTTTCTGTGAATTC
AGGTCGTAATGCTTATTTGCAGTTTTACCAGTCTTTCATGTACAGCAAGAAAACTATGTG
GAAACTGTGAGCTGAATTGTCGCCTTAGTAGAAGAGGTTAAAGGAGTGTGAAAAGAGACA
TAAAAATGCATTAAACATTTAATTTGTTTACAAAAATAAAACTTGCTATATAAATCTAGA
GTAATTTTGAATAGGAGGCTGTTTTTATATTGTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGTGTCTGCTCATTCAAAGTTTATACATTACAGAGTATAAATTTGACAGTGGAAACA
AAATTTTTTTTTCCATAAAAACCTGGTCAGGGTCATTTATATATTAGAACAGTTGGACAC
ATAGGTGTCCAATTTTTCCTTTCATTTAGACATTTGAGAGTCGGAGTGCAGTCATAATCT
TATAGGTGGTCATTTAAATTTCTTACATTTATGGTCCATAAAAACTTCAAGGCTGATAGA
TACTCTTGGTATTTCAGTTTTGACATTGCAGCTAGACGTTATTTCTGCCATAATTTCAAA
ATGGTGGAATAAATGACTTTCTCTTACCAAATCTGTTGGGTTTCAATGTTTAATAGAATA
ACCGCCTTTAAAATTGCCCTTAATTGAAAAGTAGTTAACATAGCTTAGTTGACTCAGTAG
TTTAATTTTAACTGATAAAAGTAACATAATTTCAATGTAGTAAATCTTTTTTTCCATAAG
AGGAAATGTAAAATTTCATTCTTTTAAAATTAAAGTTATAAAAATATGAGCTAAAAGTTC
TGAAAAGAATTGAAACTTAAGACTTTAAATTGAGAGTGGCATTTAATATTTAAAATACCT
GCTTATTCAATTTTTAGTTTAAACACACATCAGTTCTCTACTGGATTCTTTTTATACTTC
TCATTTATTTTAAAAACTACAGGTAAATATGTGAGAACACTAGAAGTGTCAGATTATCTA
TGGAGATGCCTTTTTTTTCTTTTAATTTGAACCTTTAATTTAAATCTTTATTCTGATGTA
ACATTTGAGGTTGATAACTATACTGAGTTATTCCTTCAGTTCCTTTGATAACCAAAGACG
TACAGTGGAAGCTGTCCCTCTTATTACTAGGAAATGCAGTCCTTCCAAAAAAAAAAAAAA
AATCAAGTTTCCTTTTCCTGCCTTCCATCCATTTATTGCCCATAATTTTCAAGAAAAGGT
AGGTATAGAAACACATGGGAAATGTGATGGTGAAACAATATTTATAAAAATGAGAACATG
TCCAAATGAATTCTGGTCTCCTCTTCAGAACTGGCCATTTAAGATGCTTTCTGTGAATTC
AGGTCGTAATGCTTATTTGCAGTTTTACCAGTCTTTCATGTACAGCAAGAAAACTATGTG
GAAACTGTGAGCTGAATTGTCGCCTTAGTAGAAGAGGTTAAAGGAGTGTGAAAAGAGACA
TAAAAATGCATTAAACATTTAATTTGTTTACAAAAATAAAACTTGCTATATAAATCTAGA
GTAATTTTGAATAGGAGGCTGTTTTTATATTGTGTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               223-340, + strand, RNAz p=0.658948
               

               
               1095-1213, - strand, RNAz p=0.610924

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-340, + strand, RNAz p=0.658948
               

               
               1095-1213, - strand, RNAz p=0.610924

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR749800, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR749800, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1296, gnl|bosTau2|chr26 (27981499-27982808)
               

               
               3-1296, gnl|Hg17|chr10 (124743204-124742008)
               

               
               3-1296, gnl|Mm7|chr7 (127747412-127746275)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1296, gnl|bosTau2|chr26 (27981499-27982808)
               

               
               3-1296, gnl|Hg17|chr10 (124743204-124742008)
               

               
               3-1296, gnl|Mm7|chr7 (127747412-127746275)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ret (0.257467)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)

	223-340, + strand, RNAz p=0.658948
	1095-1213, - strand, RNAz p=0.610924

	3-1296, gnl\|bosTau2\|chr26 (27981499-27982808)
	3-1296, gnl\|Hg17\|chr10 (124743204-124742008)
	3-1296, gnl\|Mm7\|chr7 (127747412-127746275)

	ret (0.257467)
	tra (0.246184)
	aor (0.195274)
	ill (0.175593)
	mga (0.160205)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	nmm (0.132802)
	ova (0.129132)
	cbl (0.114797)