Non-Coding RNA Search

Ss1.1-Pig4-TMW8033H24.3

Sequence:


               
               ACGGCGACAAGTATGCAGCCACCACCACGCCTTTTACCCCTTTGCACATCAAGGTGAAAC
CCAAGCGGGTGGGCATATTCCTAGACTATGAGGCCGGCACACTGTCTTTTTATAACGTCA
CAGACCGCTCTCACATCTACACCTTCACCGATACTTTTACTGAAAAACTTTGGCCCCTCT
TCTACCCAGGCATCCGGGCTGGTCGGAAGAATGCTGCACCATTGACCATCAGACCCCCAA
CAGATTGGGAGTGACAGGTAGGGACATGGGAATAATCAGGGTGAGGCAGGGTCAAGAGCT
ACGGGCCTTCCTTCCTGTGACCTGCTGGAGCGTCTTCATGTCTGCTGGTTCCAGTCCTGA
ACCATCTGGGAGAACACCATGGTTTCTAGAATGGTTTATGTGGAGGAGTAGGTAGGACTG
GGCTGGGACGAGAGCACGCTGTGTCTCCCTCCTAACTGTCAGGGTGGGGAGCTGGTTCCC
AGGGGGTTGTCGCCCCTGAAGTCCATCAGGTTTTCTGTTGCACAGGATGGGTTGGGAAGG
AAGGAGAGGCTTTTCCAGAAACAACAAGTCTATAGGAGGGTCTGACTTGCTCGAGTCAGA
GGAGGAAACCAAAACCCCTGTACATCCTTTTAGGGGGTTTCTTTGACCCAGAATGGTCTG
GTTTCTTTAGGAAGATCACAGGGGTCTCTGTACCTCTAGACTGAAATTAAGTTGAATGAC
AGTTGCTCTCGTGGGTCTAGAAGTTGAGGAGTTTTGTTCAGGGCAGAGATTGGGCATCAA
GGTTAGAAAGAAGGTTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGCGACAAGTATGCAGCCACCACCACGCCTTTTACCCCTTTGCACATCAAGGTGAAAC
CCAAGCGGGTGGGCATATTCCTAGACTATGAGGCCGGCACACTGTCTTTTTATAACGTCA
CAGACCGCTCTCACATCTACACCTTCACCGATACTTTTACTGAAAAACTTTGGCCCCTCT
TCTACCCAGGCATCCGGGCTGGTCGGAAGAATGCTGCACCATTGACCATCAGACCCCCAA
CAGATTGGGAGTGACAGGTAGGGACATGGGAATAATCAGGGTGAGGCAGGGTCAAGAGCT
ACGGGCCTTCCTTCCTGTGACCTGCTGGAGCGTCTTCATGTCTGCTGGTTCCAGTCCTGA
ACCATCTGGGAGAACACCATGGTTTCTAGAATGGTTTATGTGGAGGAGTAGGTAGGACTG
GGCTGGGACGAGAGCACGCTGTGTCTCCCTCCTAACTGTCAGGGTGGGGAGCTGGTTCCC
AGGGGGTTGTCGCCCCTGAAGTCCATCAGGTTTTCTGTTGCACAGGATGGGTTGGGAAGG
AAGGAGAGGCTTTTCCAGAAACAACAAGTCTATAGGAGGGTCTGACTTGCTCGAGTCAGA
GGAGGAAACCAAAACCCCTGTACATCCTTTTAGGGGGTTTCTTTGACCCAGAATGGTCTG
GTTTCTTTAGGAAGATCACAGGGGTCTCTGTACCTCTAGACTGAAATTAAGTTGAATGAC
AGTTGCTCTCGTGGGTCTAGAAGTTGAGGAGTTTTGTTCAGGGCAGAGATTGGGCATCAA
GGTTAGAAAGAAGGTTTAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50764568|ref|XP_426823.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50764568|ref|XP_426823.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               397-748, + strand, RNAz p=0.999816

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-748, + strand, RNAz p=0.999816

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_172016, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_172016, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-795, gnl|bosTau2|chr23 (20958309-20957512)
               

               
               1-795, gnl|Hg17|chr6 (30417762-30418557)
               

               
               1-795, gnl|Mm7|chr17 (34409098-34408330)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-795, gnl|bosTau2|chr23 (20958309-20957512)
               

               
               1-795, gnl|Hg17|chr6 (30417762-30418557)
               

               
               1-795, gnl|Mm7|chr17 (34409098-34408330)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	1-795, gnl\|bosTau2\|chr23 (20958309-20957512)
	1-795, gnl\|Hg17\|chr6 (30417762-30418557)
	1-795, gnl\|Mm7\|chr17 (34409098-34408330)