Non-Coding RNA Search

Ss1.1-Pig4-TMW8033I05.3

Sequence:


               
               CCCTCCCTCCCTCCCTCCCTCTCATCTCTCTCTGTTCTCTCAGCCCCAGCAACTTTCATG
GTATTATCCAGGTACTGTGCTAAAAGGGTAGCTCTTCTGTAAAATGTCATGCCTTGCCGC
TTTAAAAAGCAAAATCCTGTATTCCATGGAGAGAGGGAAGGGTGACTCTCTTCTAAGAAA
AATAGACTGGACAGGTGAATGCATGTATGCATGTTTAGAATTGCTTCTCAGAAGACAAAG
AGGTGATAGCACTATAAATGAATGAATGAATTGAAGGTCTAGCTCAGGCTGGTCAAGTGT
TTGCCTTAGAGCTTCCCTATTAACAGCTCTAGGAGGGGAACCCTGACCTCAGGGGTGGAA
GGCCCTTCCTTGATGTTATGCTAGCAATTGCTATCCCCTAATTGCCTGTAAAGGCAGGAG
AAAAAAACAAAGGATCATAGCATTGCCATTGATAAAACAGAATGCTGAAAATAAATTCTT
TTCCCTTGTCTCACATGTTTGGAATGAAAGCCAGAATAGGATAGGAAATCCAGTAATAGT
TCTGAGGTTGATACCCCATCTTTAAGAAGATCCTGTCTTTAAAATGAAACTAGCAGGCAA
GTAAACACCAAAATTACCAAAGAACAGCAACTAAACAAGAAAACTTAAAAGATTTTTACT
TCCTATTCTTATCCCCTCGCCCTATATCTGTGACATCTCTTGCATTTGCTCAGTTGCCTG
TGTGTCAAAATATCTTGTGGACGTTGGAAATTATTTGAAAATGTATTGTGTGGAATGTAA
TAAAATGATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCCTCCCTCCCTCCCTCTCATCTCTCTCTGTTCTCTCAGCCCCAGCAACTTTCATG
GTATTATCCAGGTACTGTGCTAAAAGGGTAGCTCTTCTGTAAAATGTCATGCCTTGCCGC
TTTAAAAAGCAAAATCCTGTATTCCATGGAGAGAGGGAAGGGTGACTCTCTTCTAAGAAA
AATAGACTGGACAGGTGAATGCATGTATGCATGTTTAGAATTGCTTCTCAGAAGACAAAG
AGGTGATAGCACTATAAATGAATGAATGAATTGAAGGTCTAGCTCAGGCTGGTCAAGTGT
TTGCCTTAGAGCTTCCCTATTAACAGCTCTAGGAGGGGAACCCTGACCTCAGGGGTGGAA
GGCCCTTCCTTGATGTTATGCTAGCAATTGCTATCCCCTAATTGCCTGTAAAGGCAGGAG
AAAAAAACAAAGGATCATAGCATTGCCATTGATAAAACAGAATGCTGAAAATAAATTCTT
TTCCCTTGTCTCACATGTTTGGAATGAAAGCCAGAATAGGATAGGAAATCCAGTAATAGT
TCTGAGGTTGATACCCCATCTTTAAGAAGATCCTGTCTTTAAAATGAAACTAGCAGGCAA
GTAAACACCAAAATTACCAAAGAACAGCAACTAAACAAGAAAACTTAAAAGATTTTTACT
TCCTATTCTTATCCCCTCGCCCTATATCTGTGACATCTCTTGCATTTGCTCAGTTGCCTG
TGTGTCAAAATATCTTGTGGACGTTGGAAATTATTTGAAAATGTATTGTGTGGAATGTAA
TAAAATGATGAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-792, gnl|bosTau2|chr2 (54519218-54518407)
               

               
               7-792, gnl|Hg17|chr2 (206469114-206469931)
               

               
               7-792, gnl|Mm7|chr1 (63039119-63039963)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-792, gnl|bosTau2|chr2 (54519218-54518407)
               

               
               7-792, gnl|Hg17|chr2 (206469114-206469931)
               

               
               7-792, gnl|Mm7|chr1 (63039119-63039963)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               aor (0.781097)
               

               
               bla (0.373042)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               cut (0.169924)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.781097)
               

               
               bla (0.373042)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               cut (0.169924)

	7-792, gnl\|bosTau2\|chr2 (54519218-54518407)
	7-792, gnl\|Hg17\|chr2 (206469114-206469931)
	7-792, gnl\|Mm7\|chr1 (63039119-63039963)

	aor (0.781097)
	bla (0.373042)
	col (0.195008)
	gul (0.177588)
	cut (0.169924)