Non-Coding RNA Search

Ss1.1-Pig4-TMW8033I06.3

Sequence:


               
               GCTGCGCGGGGGTGTGGGGCTCAGAGCGGCGCCGGGATAGCGCGGAGCAGCCGGGCACGG
GGACGAGGAGGAGCTGGGAGAAGGCGGCGGCCCGGCGGGGCAGAGAGAGCTGGACTGACC
ATTATGGAGGAAGAGCTGCAGCATTCGCACTGCGTGAATTGTGTCAGTAGACGGTGTATG
ACCAGACCAGAGCCTGGGATTTCCTGTGACTTGATTGGTTGTCCACTGGTTTGTGGAGCA
GTTTTCCATTCTTGTAAAGCTGATGAGCATCGACTTTTATGTCCATTTGAACGAGTGCCT
TGTTTAAATAGTGACTTTGGATGTCCATTTACAATGGCTCGAAATAAAGTTGCCGAACAT
CTAGAAACATGTCCTGCAAGTGTGGTGTGCTGTACTATGGAGTGGAACCGATGGCCAGTT
AGTTATGCAGACAGAAAATCTTATGAAAATCTAAGCAGAGATGTTGATGAAGTGGCACAA
TTAGATATGGCCTTGGCCCTTCAAGACCAAAGGATGCTCTTAGAATCTCTCAAAGTAGCC
ACCATGATGTCAAAAGCAACTGATAAGGTATCAGAACCTAGAGAACAGATCTCAGTTAAA
TCAAGTGTCTCAGAAATACCACATACTAATGGTTTGGTATCTGTTGATGAAGAATCTTAT
GGTGCACTTTATCAAGCTACTGTTGAAACAACTAGAAGTTTGGCTGCCGCTTTAGACATC
CTGAATACCGCCACAAGAGACATTGGCATGTTAAGTTCGAGTCTTTGTACTTCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCGCGGGGGTGTGGGGCTCAGAGCGGCGCCGGGATAGCGCGGAGCAGCCGGGCACGG
GGACGAGGAGGAGCTGGGAGAAGGCGGCGGCCCGGCGGGGCAGAGAGAGCTGGACTGACC
ATTATGGAGGAAGAGCTGCAGCATTCGCACTGCGTGAATTGTGTCAGTAGACGGTGTATG
ACCAGACCAGAGCCTGGGATTTCCTGTGACTTGATTGGTTGTCCACTGGTTTGTGGAGCA
GTTTTCCATTCTTGTAAAGCTGATGAGCATCGACTTTTATGTCCATTTGAACGAGTGCCT
TGTTTAAATAGTGACTTTGGATGTCCATTTACAATGGCTCGAAATAAAGTTGCCGAACAT
CTAGAAACATGTCCTGCAAGTGTGGTGTGCTGTACTATGGAGTGGAACCGATGGCCAGTT
AGTTATGCAGACAGAAAATCTTATGAAAATCTAAGCAGAGATGTTGATGAAGTGGCACAA
TTAGATATGGCCTTGGCCCTTCAAGACCAAAGGATGCTCTTAGAATCTCTCAAAGTAGCC
ACCATGATGTCAAAAGCAACTGATAAGGTATCAGAACCTAGAGAACAGATCTCAGTTAAA
TCAAGTGTCTCAGAAATACCACATACTAATGGTTTGGTATCTGTTGATGAAGAATCTTAT
GGTGCACTTTATCAAGCTACTGTTGAAACAACTAGAAGTTTGGCTGCCGCTTTAGACATC
CTGAATACCGCCACAAGAGACATTGGCATGTTAAGTTCGAGTCTTTGTACTTCCCCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               106-221, + strand, RNAz p=0.760282

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-221, + strand, RNAz p=0.760282

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               159-247, + strand, RNAmicro p=0.94785

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               159-247, + strand, RNAmicro p=0.94785

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               106-779, gnl|bosTau2|chr9 (48825621-48824948)
               

               
               106-779, gnl|Hg17|chr6 (146169252-146168588)
               

               
               106-779, gnl|Mm7|chr10 (10987697-10988373)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-779, gnl|bosTau2|chr9 (48825621-48824948)
               

               
               106-779, gnl|Hg17|chr6 (146169252-146168588)
               

               
               106-779, gnl|Mm7|chr10 (10987697-10988373)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	106-779, gnl\|bosTau2\|chr9 (48825621-48824948)
	106-779, gnl\|Hg17\|chr6 (146169252-146168588)
	106-779, gnl\|Mm7\|chr10 (10987697-10988373)