Non-Coding RNA Search

Ss1.1-Pig4-TMW8033I08.5

Sequence:


               
               CCACAAAGTGCAAAAATCTGTATTTCGGAACACCCCGCGCTTACACAGCGCCGGTGACTG
ACCAGTGGGTGGGGCGCTGCTCCCCCACATTTCCTGCCACCACGGTCAGTGTTCTCGTTC
CTGCGGCGGCACCAAGGAGTGGGAAGGCGCCAGGCCCAGCCCAGCCCTCTTGGCCGGCCT
GGCGCTGGACCCCCAGGCGAAGCCCCTGGTCGTGAGCTGCAGCCGCCCTGGTCTCAGGTC
CACCCCAGCACTGATTTTCCGGGTCACCAGCTTGCAGACCCTGCCCCGTGAGCCAGGACC
TCTTCCTCCTGAGAAGAGGATGGACAGGCAGGTGTGCCACACAGCTGTCCGACAGATGCC
ACCTTCCTGTCTCCCCTCACTTTGGGGGGCTCAGGGTCCTCAGAGGGGACCCCTGCACAT
AAGCCAGGACAGCATTTTGCAGGAAGCTGGCCCTCTGTGCTTCCTCTTCCCGGATTCGGG
CGATCTCTGCCTCTTTCAGCCGAAGCTTCTCGCGGAGAGAGGCGTTCTCGCTTTCCCTGT
CCAGTAGCGCCTCCCGGTGGTCACTCGCGATCACTTTCAGCTGGCGCTCCAGGGCTGCCG
CCTTCTCCTTGAGCGCTTCCTGGGCCGTCAGCTCCGCCTGCAAGCGGCCATTCTGCTCCT
GCAGCTCCAGCCGCACCCTGGTCACCTCAGCCGCCTTTTCTTGGTCCTTATTGCTCAGCT
CCTGCTGCAGCTCCTCCAGGCGCCGCCTCAGGCCCTCCACCTGTAGGCCTAGCTGGCTGG
CCCGGGCCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACAAAGTGCAAAAATCTGTATTTCGGAACACCCCGCGCTTACACAGCGCCGGTGACTG
ACCAGTGGGTGGGGCGCTGCTCCCCCACATTTCCTGCCACCACGGTCAGTGTTCTCGTTC
CTGCGGCGGCACCAAGGAGTGGGAAGGCGCCAGGCCCAGCCCAGCCCTCTTGGCCGGCCT
GGCGCTGGACCCCCAGGCGAAGCCCCTGGTCGTGAGCTGCAGCCGCCCTGGTCTCAGGTC
CACCCCAGCACTGATTTTCCGGGTCACCAGCTTGCAGACCCTGCCCCGTGAGCCAGGACC
TCTTCCTCCTGAGAAGAGGATGGACAGGCAGGTGTGCCACACAGCTGTCCGACAGATGCC
ACCTTCCTGTCTCCCCTCACTTTGGGGGGCTCAGGGTCCTCAGAGGGGACCCCTGCACAT
AAGCCAGGACAGCATTTTGCAGGAAGCTGGCCCTCTGTGCTTCCTCTTCCCGGATTCGGG
CGATCTCTGCCTCTTTCAGCCGAAGCTTCTCGCGGAGAGAGGCGTTCTCGCTTTCCCTGT
CCAGTAGCGCCTCCCGGTGGTCACTCGCGATCACTTTCAGCTGGCGCTCCAGGGCTGCCG
CCTTCTCCTTGAGCGCTTCCTGGGCCGTCAGCTCCGCCTGCAAGCGGCCATTCTGCTCCT
GCAGCTCCAGCCGCACCCTGGTCACCTCAGCCGCCTTTTCTTGGTCCTTATTGCTCAGCT
CCTGCTGCAGCTCCTCCAGGCGCCGCCTCAGGCCCTCCACCTGTAGGCCTAGCTGGCTGG
CCCGGGCCTGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               346-447, - strand, RNAz p=0.651221

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               346-447, - strand, RNAz p=0.651221

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_144999, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_144999, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               164-575, gnl|bosTau2|chr19 (45658299-45657856)
               

               
               164-575, gnl|Hg17|chr17 (77582156-77581772)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               164-575, gnl|bosTau2|chr19 (45658299-45657856)
               

               
               164-575, gnl|Hg17|chr17 (77582156-77581772)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               ute (0.132784)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               ute (0.132784)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	164-575, gnl\|bosTau2\|chr19 (45658299-45657856)
	164-575, gnl\|Hg17\|chr17 (77582156-77581772)

	nep (0.183925)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	csp (0.161186)
	ute (0.132784)
	jca (0.11396)
	eje (0.0988338)