Non-Coding RNA Search

Ss1.1-Pig4-TMW8033I10.3

Sequence:


               
               CAAGTGCTGGCTCTCTTACCTGAAATAGTGTTCTTCTTATGTGGAAATGGATGCTAATTC
CCTTAAAACAACTCAGAATAGCAGGAAGATGGGCTAATGGGTGGCCTGTGTAACTGATAA
TCTCTGGGGCCACCTGCCCCTCTGTGACTACTCACTGTGTCAATTTCCTTCCTTCAGAGT
GGGGTGCTGTCCTCCCTGCCTTTTATTGCTGCCTCAAGTTGTACAATTCTAGGAGGTCAG
TTGGCAGATTTCCTCCTGTCCAGGAAACTTCTCAGATTAATCACCGTCCGAAAACTCTTT
TCGTCCCTAGGTAAGGATAGTCAGGATGCAGTTAACCAATCCCTTTCTCCACATGTGGTC
AGAGAAGTTTCCTGACAGCATGTCTTATTGCCCAGGGCTCCTCCTTCCATCACTATGTGC
TGTGGCTCTGCCTTTTGTGGCTTCCAGTTACATAACAACCATTATTTTGCTGATACTTAT
TCCCGGGACCAGCAACCTGTGTGATTCGGGATTCATCATCAATACCTTAGATGTTGCCCC
CAGATATGCAAGTTTCCTCATGGGGATCTCAAGGGGATTTGGGCTCATCGCGGGAATCAT
CTCCTCCACTGCCACCGGATTCCTTATCAGTCAGGATTCTGTGTCTGGATGGAGGAATGT
CTTTTTCCTGGCTGCTGCTGTCAACATATTTGGCCTGGTTTTTTACCTCACATTTGGACA
AGCAGAAATCCAGGACTGGGCCAAAGAGAGGACTCTTACCCGCCTCTAAGAATATAGAGT
TGTAAACTTAAATGCAGTACTGACGATTAAGTTTTTTAACATTTTTTACTTATTTTTCTT
CATATTCGTGGCCATAGACTCAGCAATTCTCAACTTTGGTGGTGCGTTAAAATACCTGGG
TGTCTTTAAAATACCTGGATGAATGGACTCTCCTCCAGAGATTCTGAATGAGTTGGTCTG
GGGTAGAGCCCAGATATCACTAATTTTTAGACACACCTCAGGATTTCTAACATGAAGCCA
GCATTGACAACTGCTGGACAAACTTGAAACATCAATACCTGTTGCCTTTGAAATTTCCTT
TTTGACAGGAACTAGATAAATAAAAATCTGTGTGAAAATAATCACCAATAAATACCTTCA
CAGAGGTGATTATAGACACAGAGAAGATCTACTGGAAGCATAGCTGTATATTATAGAGAA
CAGCGCAGATAGAATTTTAAGGCTGTAATCCACAGAATTAACATTTTTATTGTTTTTATA
CGTGGTGAAACAGGGATGTTTATTTATGTGATTACATTCTATTAAAATTCACGTTTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGTGCTGGCTCTCTTACCTGAAATAGTGTTCTTCTTATGTGGAAATGGATGCTAATTC
CCTTAAAACAACTCAGAATAGCAGGAAGATGGGCTAATGGGTGGCCTGTGTAACTGATAA
TCTCTGGGGCCACCTGCCCCTCTGTGACTACTCACTGTGTCAATTTCCTTCCTTCAGAGT
GGGGTGCTGTCCTCCCTGCCTTTTATTGCTGCCTCAAGTTGTACAATTCTAGGAGGTCAG
TTGGCAGATTTCCTCCTGTCCAGGAAACTTCTCAGATTAATCACCGTCCGAAAACTCTTT
TCGTCCCTAGGTAAGGATAGTCAGGATGCAGTTAACCAATCCCTTTCTCCACATGTGGTC
AGAGAAGTTTCCTGACAGCATGTCTTATTGCCCAGGGCTCCTCCTTCCATCACTATGTGC
TGTGGCTCTGCCTTTTGTGGCTTCCAGTTACATAACAACCATTATTTTGCTGATACTTAT
TCCCGGGACCAGCAACCTGTGTGATTCGGGATTCATCATCAATACCTTAGATGTTGCCCC
CAGATATGCAAGTTTCCTCATGGGGATCTCAAGGGGATTTGGGCTCATCGCGGGAATCAT
CTCCTCCACTGCCACCGGATTCCTTATCAGTCAGGATTCTGTGTCTGGATGGAGGAATGT
CTTTTTCCTGGCTGCTGCTGTCAACATATTTGGCCTGGTTTTTTACCTCACATTTGGACA
AGCAGAAATCCAGGACTGGGCCAAAGAGAGGACTCTTACCCGCCTCTAAGAATATAGAGT
TGTAAACTTAAATGCAGTACTGACGATTAAGTTTTTTAACATTTTTTACTTATTTTTCTT
CATATTCGTGGCCATAGACTCAGCAATTCTCAACTTTGGTGGTGCGTTAAAATACCTGGG
TGTCTTTAAAATACCTGGATGAATGGACTCTCCTCCAGAGATTCTGAATGAGTTGGTCTG
GGGTAGAGCCCAGATATCACTAATTTTTAGACACACCTCAGGATTTCTAACATGAAGCCA
GCATTGACAACTGCTGGACAAACTTGAAACATCAATACCTGTTGCCTTTGAAATTTCCTT
TTTGACAGGAACTAGATAAATAAAAATCTGTGTGAAAATAATCACCAATAAATACCTTCA
CAGAGGTGATTATAGACACAGAGAAGATCTACTGGAAGCATAGCTGTATATTATAGAGAA
CAGCGCAGATAGAATTTTAAGGCTGTAATCCACAGAATTAACATTTTTATTGTTTTTATA
CGTGGTGAAACAGGGATGTTTATTTATGTGATTACATTCTATTAAAATTCACGTTTAAAT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               151-270, + strand, RNAz p=0.796372
               

               
               871-1027, - strand, RNAz p=0.999208
               

               
               1068-1183, - strand, RNAz p=0.522485

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-270, + strand, RNAz p=0.796372
               

               
               871-1027, - strand, RNAz p=0.999208
               

               
               1068-1183, - strand, RNAz p=0.522485

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               887-1013, + strand, RNAmicro p=0.999843
               

               
               896-1030, - strand, RNAmicro p=0.998992

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               887-1013, + strand, RNAmicro p=0.999843
               

               
               896-1030, - strand, RNAmicro p=0.998992

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-546, gnl|bosTau2|chr23 (24423240-24423780)
               

               
               1-546, gnl|Hg17|chr6 (26024460-26023703)
               

               
               1-546, gnl|Mm7|chr13 (23185500-23186034)
               


               
               632-1186, gnl|bosTau2|chr23 (24426410-24426952)
               

               
               632-1186, gnl|Hg17|chr6 (26021661-26021117)
               

               
               632-1186, gnl|Mm7|chr13 (23188094-23188588)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-546, gnl|bosTau2|chr23 (24423240-24423780)
               

               
               1-546, gnl|Hg17|chr6 (26024460-26023703)
               

               
               1-546, gnl|Mm7|chr13 (23185500-23186034)
               


               
               632-1186, gnl|bosTau2|chr23 (24426410-24426952)
               

               
               632-1186, gnl|Hg17|chr6 (26021661-26021117)
               

               
               632-1186, gnl|Mm7|chr13 (23188094-23188588)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.300978)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.300978)

	151-270, + strand, RNAz p=0.796372
	871-1027, - strand, RNAz p=0.999208
	1068-1183, - strand, RNAz p=0.522485

	887-1013, + strand, RNAmicro p=0.999843
	896-1030, - strand, RNAmicro p=0.998992

	1-546, gnl\|bosTau2\|chr23 (24423240-24423780)
	1-546, gnl\|Hg17\|chr6 (26024460-26023703)
	1-546, gnl\|Mm7\|chr13 (23185500-23186034)

	632-1186, gnl\|bosTau2\|chr23 (24426410-24426952)
	632-1186, gnl\|Hg17\|chr6 (26021661-26021117)
	632-1186, gnl\|Mm7\|chr13 (23188094-23188588)