Non-Coding RNA Search

Ss1.1-Pig4-TMW8033I12.5

Sequence:


               
               GGAGGAGCATGAGGGCGTCTTTTCACAGTCCTTCCTACCTGCTTCAGATTCTGACAGTGA
CATCATCTTTGACAATGACGATGAGAACAGTAAAAGTCAGAATCAGGATGAAGACTGCAA
TGGAGAGAACAGTTGCCATGAAAGTGAGCCACCGGCAACCACTGAGGCCGTGCACTACCT
CTATATCCAGATGGAATACTGTGAAAAGAGTACCTTACGTGACACCATTGACCAGGGACT
GTATCGAGACACCGTCAGGCTCTGGAGGCTTTTCCGAGAGATTCTGGATGGACTGGCTTA
TATCCATGAGAAAGGAATGATTCACCGAGATTTGAAGCCTGTCAACATTTTTTTGGATTC
TGATGACCACGTAAAAATAGGTGATTTTGGTTTGGCAACAGACCATCTAGCCTTTGCTGC
TGATGGCAAACAAGATGATACATCAGATCATTTGATGAAATCAGACCCTTCAGGTCATTT
AACCGGAATGGTTGGCACTGCTTTATACGTAAGCCCAGAAGTCCAAGGAAGCACCAAATC
TGCATACAACCAGAAAGTGGATCTCTTCAGCCTGGGAATTATCTTCTTCGAGATGTCCTA
TCATCCCATGGTCACAGCCTCAGAAAGGATCTTTGTTCTCAACCAACTCAGAGATCCGAC
TTCGCCTAAGTTTCCAGACGACTTCGATGATGGAGAGCATACAAAGCAGAAATCCGTCAT
CTCCTGGCTGTTGAACCACGACCCAGCCAAGCGGCCCACAGCTACGGAACTGCTCAAGAG
CGAGCTGCTGCCCCCGCCTCAGATGGAGGAGTCAGAGCTGCATGAGGTGCTGCACCACAC
CCTGGCCAACGTGGATGGCAAGGCCTACCGCACCATGATGGCCCAGATCTTCTCCCAGCG
TGTCCCACCTGCCATCGATTATACCTACGACAGCGATATACTCAAGGGCAGTTTCTCCAT
CCGTACAGCCAAGATACAGCAACACGTGTGTGAAACCATCATCCGCATCTTCAAAAGACA
TGGTGCTGTCCAGTTGTGTACCCCACTACTGCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGAGCATGAGGGCGTCTTTTCACAGTCCTTCCTACCTGCTTCAGATTCTGACAGTGA
CATCATCTTTGACAATGACGATGAGAACAGTAAAAGTCAGAATCAGGATGAAGACTGCAA
TGGAGAGAACAGTTGCCATGAAAGTGAGCCACCGGCAACCACTGAGGCCGTGCACTACCT
CTATATCCAGATGGAATACTGTGAAAAGAGTACCTTACGTGACACCATTGACCAGGGACT
GTATCGAGACACCGTCAGGCTCTGGAGGCTTTTCCGAGAGATTCTGGATGGACTGGCTTA
TATCCATGAGAAAGGAATGATTCACCGAGATTTGAAGCCTGTCAACATTTTTTTGGATTC
TGATGACCACGTAAAAATAGGTGATTTTGGTTTGGCAACAGACCATCTAGCCTTTGCTGC
TGATGGCAAACAAGATGATACATCAGATCATTTGATGAAATCAGACCCTTCAGGTCATTT
AACCGGAATGGTTGGCACTGCTTTATACGTAAGCCCAGAAGTCCAAGGAAGCACCAAATC
TGCATACAACCAGAAAGTGGATCTCTTCAGCCTGGGAATTATCTTCTTCGAGATGTCCTA
TCATCCCATGGTCACAGCCTCAGAAAGGATCTTTGTTCTCAACCAACTCAGAGATCCGAC
TTCGCCTAAGTTTCCAGACGACTTCGATGATGGAGAGCATACAAAGCAGAAATCCGTCAT
CTCCTGGCTGTTGAACCACGACCCAGCCAAGCGGCCCACAGCTACGGAACTGCTCAAGAG
CGAGCTGCTGCCCCCGCCTCAGATGGAGGAGTCAGAGCTGCATGAGGTGCTGCACCACAC
CCTGGCCAACGTGGATGGCAAGGCCTACCGCACCATGATGGCCCAGATCTTCTCCCAGCG
TGTCCCACCTGCCATCGATTATACCTACGACAGCGATATACTCAAGGGCAGTTTCTCCAT
CCGTACAGCCAAGATACAGCAACACGTGTGTGAAACCATCATCCGCATCTTCAAAAGACA
TGGTGCTGTCCAGTTGTGTACCCCACTACTGCTTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|26346052|dbj|BAC36677.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26346052|dbj|BAC36677.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               182-317, gnl|bosTau2|chr10 (23297664-23297529)
               

               
               182-317, gnl|Hg17|chr15 (38067467-38067602)
               

               
               182-317, gnl|Mm7|chr2 (118177003-118177138)
               


               
               551-655, gnl|bosTau2|chr10 (23289180-23289076)
               

               
               551-655, gnl|Hg17|chr15 (38076454-38076558)
               

               
               551-655, gnl|Mm7|chr2 (118183971-118184075)
               


               
               708-947, gnl|bosTau2|chr10 (23284934-23284695)
               

               
               708-947, gnl|Hg17|chr15 (38080479-38080718)
               

               
               708-947, gnl|Mm7|chr2 (118189123-118189362)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-317, gnl|bosTau2|chr10 (23297664-23297529)
               

               
               182-317, gnl|Hg17|chr15 (38067467-38067602)
               

               
               182-317, gnl|Mm7|chr2 (118177003-118177138)
               


               
               551-655, gnl|bosTau2|chr10 (23289180-23289076)
               

               
               551-655, gnl|Hg17|chr15 (38076454-38076558)
               

               
               551-655, gnl|Mm7|chr2 (118183971-118184075)
               


               
               708-947, gnl|bosTau2|chr10 (23284934-23284695)
               

               
               708-947, gnl|Hg17|chr15 (38080479-38080718)
               

               
               708-947, gnl|Mm7|chr2 (118189123-118189362)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	182-317, gnl\|bosTau2\|chr10 (23297664-23297529)
	182-317, gnl\|Hg17\|chr15 (38067467-38067602)
	182-317, gnl\|Mm7\|chr2 (118177003-118177138)

	551-655, gnl\|bosTau2\|chr10 (23289180-23289076)
	551-655, gnl\|Hg17\|chr15 (38076454-38076558)
	551-655, gnl\|Mm7\|chr2 (118183971-118184075)

	708-947, gnl\|bosTau2\|chr10 (23284934-23284695)
	708-947, gnl\|Hg17\|chr15 (38080479-38080718)
	708-947, gnl\|Mm7\|chr2 (118189123-118189362)