Non-Coding RNA Search

Ss1.1-Pig4-TMW8033I13.3

Sequence:


               
               GAATAAGATATGATGGAAAATCTTTATAAACATAGCCCTCACAGCAGTAGTACCTCAGTG
TGTCTGGTAAGAGACATTTCAATAGCCTTTCCTGTCAGTAGGTGGCTGTAGGCTGACTCC
AGGGTGACGGGTGAACAGGTGACTCCTGTACACCAGACAGTGCTTGTGGTGGCTCTGTTG
TCCTGGACGCAGTCTTTTACTTGTAAGTGCTAGGTATTTACCCGATGACCTCCCTTTAAG
GCCCTGTAAATTCTTCGACAGGAAGCCAGTAACAGATTATGATAACTTGAAAGGATAATC
ATGTTAAAATAAGTGACATCCTGGGTATAAAATGTACTTTTTTGAGAAGCTGGTTCTGGG
CCCTTAAACATTGACTGACAGTTTATAGATTTGTATTAGTTGTCAATATAAAAATAGCCC
AAATATCACCTCTCTTAACAAATATTTTTAATGAGAAAAGTTACCTGAGTTTTGAGTCTC
GATATTAATTAGTTCCACCTCCCTGACAGAAACAGCTACTGGTCTAATAAACACAGCCAG
CCCTTTTCTGTCCTACAACATCTCTCTCAGAGAACATAGAATAATGCCTACATGCAGTGG
GGTTGTTTTTGTTATTTTTGTTTTTGCTGGAGATTAGATGTTTTTAAGAAAAGTACTTTA
ATATATCAGTATGTCCAGAAAAATAACCCTTGGTTGAATATCATTGTGTAAATTCTTCAT
AATTGCATAGGCTCTAATTAGCAATCAGGTTTATTAATAAATTAATTTGAAATGCGTCTG
TTATAAGGAAACCTTTAAAACCTTCTTTTTAAGGAAGAATTTTAAATGAAATGTCAAGTG
CATAATGTAACATTTTTCTCTGGACCATGTTACCCTGTTAAAATTGCTGTATTGTTAATT
AATTAAACAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATAAGATATGATGGAAAATCTTTATAAACATAGCCCTCACAGCAGTAGTACCTCAGTG
TGTCTGGTAAGAGACATTTCAATAGCCTTTCCTGTCAGTAGGTGGCTGTAGGCTGACTCC
AGGGTGACGGGTGAACAGGTGACTCCTGTACACCAGACAGTGCTTGTGGTGGCTCTGTTG
TCCTGGACGCAGTCTTTTACTTGTAAGTGCTAGGTATTTACCCGATGACCTCCCTTTAAG
GCCCTGTAAATTCTTCGACAGGAAGCCAGTAACAGATTATGATAACTTGAAAGGATAATC
ATGTTAAAATAAGTGACATCCTGGGTATAAAATGTACTTTTTTGAGAAGCTGGTTCTGGG
CCCTTAAACATTGACTGACAGTTTATAGATTTGTATTAGTTGTCAATATAAAAATAGCCC
AAATATCACCTCTCTTAACAAATATTTTTAATGAGAAAAGTTACCTGAGTTTTGAGTCTC
GATATTAATTAGTTCCACCTCCCTGACAGAAACAGCTACTGGTCTAATAAACACAGCCAG
CCCTTTTCTGTCCTACAACATCTCTCTCAGAGAACATAGAATAATGCCTACATGCAGTGG
GGTTGTTTTTGTTATTTTTGTTTTTGCTGGAGATTAGATGTTTTTAAGAAAAGTACTTTA
ATATATCAGTATGTCCAGAAAAATAACCCTTGGTTGAATATCATTGTGTAAATTCTTCAT
AATTGCATAGGCTCTAATTAGCAATCAGGTTTATTAATAAATTAATTTGAAATGCGTCTG
TTATAAGGAAACCTTTAAAACCTTCTTTTTAAGGAAGAATTTTAAATGAAATGTCAAGTG
CATAATGTAACATTTTTCTCTGGACCATGTTACCCTGTTAAAATTGCTGTATTGTTAATT
AATTAAACAGGT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               2-491, gnl|bosTau2|chr9 (56867598-56868062)
               

               
               2-491, gnl|Hg17|chr6 (157684027-157683360)
               


               
               614-902, gnl|bosTau2|chr13 (41992202-41991926)
               

               
               614-902, gnl|Hg17|chr6 (157683398-157683097)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-491, gnl|bosTau2|chr9 (56867598-56868062)
               

               
               2-491, gnl|Hg17|chr6 (157684027-157683360)
               


               
               614-902, gnl|bosTau2|chr13 (41992202-41991926)
               

               
               614-902, gnl|Hg17|chr6 (157683398-157683097)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               fbs (0.350693)
               

               
               fcc (0.197785)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               fcc (0.197785)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	2-491, gnl\|bosTau2\|chr9 (56867598-56868062)
	2-491, gnl\|Hg17\|chr6 (157684027-157683360)

	614-902, gnl\|bosTau2\|chr13 (41992202-41991926)
	614-902, gnl\|Hg17\|chr6 (157683398-157683097)

	fbs (0.350693)
	fcc (0.197785)
	tbr (0.154178)
	bfe (0.149858)
	lin (0.145603)
	lyg (0.133103)
	sug (0.127291)
	spc (0.113366)