Non-Coding RNA Search

Ss1.1-Pig4-TMW8033I15.5

Sequence:


               
               CCCAGTAGAGACTGGGACGTTAAATGTGCCCCTCCTTACCAAAGAGCTGCAGACGATGAG
TTTTGCCCATTGCACAGGGCGATCCTGGAGCTAAGATGGGGACTGCAGGAGGCCACCTAG
CCTGGTAGGTTTCAAGTCAGGCTGTACATTAGAATTCCCTTGGGAGCATTTAGGAAATGC
CAGGGTCCAGACCCAACCCCAGACCAATTGAGGCCCAAGCTCCAGAGTAGGGCCTGGCCT
TGTGTATGTTTTTATAAGTTCCCAGGTGATTCTGCAGTTCGGTGAGGATAGAGACTCACT
GGGCTGGTCCTATCTGCAGTAAAGATGAGAACAATGAGCACCAGACAGGATTTGGGACTC
CAACCCGATCTTCTAAGTCCAGGCTGGAAGCTCCTAAAAAAGTCAAGAAGCATTGTCCTA
GGTGTCTCGGACCCCCAGCTGCAACACAATAAGGGCTCTGTGCTTCTGATTTCCCCTTCC
CTTAGCCATGGCTGAGTCCCCTTGTCTGCCCACACATACCAGATGCCCACATTCCTTGTG
TTTACTCAGTCACTAGGGGCCCGCCAAGCTTGCCAAAGGCTAAATCCCAGAATTGTAGGG
AGCAGAGCTTCACTGGAGGGGGCTACCTCTCTCACCTCATTTGTGGCCGGCACTTTAGAG
TTTACAAGCCCTCCCACCCCCACTCACTGACACATCCTACTCTCCTATGAGTCAGCTGGG
TATTGGTATCTCCAAGATCAGAAGGGAAGACCTAGCCCCAGAGAATGAAAGAATCATCAA
GCCCACAGTACTGGCTGCAAAGCATGGAGGTAGGGCTAGTCTGGGAGCTTCCCGCATGCC
TCCTCTGCCCAGAGCCATCCCTTCCTTCTCAAGCTCTCCCCATCCCTAAGGGACCTAGAC
TTCATGCTTGAAAGCAATGCGAAGGCATCCAAGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGTAGAGACTGGGACGTTAAATGTGCCCCTCCTTACCAAAGAGCTGCAGACGATGAG
TTTTGCCCATTGCACAGGGCGATCCTGGAGCTAAGATGGGGACTGCAGGAGGCCACCTAG
CCTGGTAGGTTTCAAGTCAGGCTGTACATTAGAATTCCCTTGGGAGCATTTAGGAAATGC
CAGGGTCCAGACCCAACCCCAGACCAATTGAGGCCCAAGCTCCAGAGTAGGGCCTGGCCT
TGTGTATGTTTTTATAAGTTCCCAGGTGATTCTGCAGTTCGGTGAGGATAGAGACTCACT
GGGCTGGTCCTATCTGCAGTAAAGATGAGAACAATGAGCACCAGACAGGATTTGGGACTC
CAACCCGATCTTCTAAGTCCAGGCTGGAAGCTCCTAAAAAAGTCAAGAAGCATTGTCCTA
GGTGTCTCGGACCCCCAGCTGCAACACAATAAGGGCTCTGTGCTTCTGATTTCCCCTTCC
CTTAGCCATGGCTGAGTCCCCTTGTCTGCCCACACATACCAGATGCCCACATTCCTTGTG
TTTACTCAGTCACTAGGGGCCCGCCAAGCTTGCCAAAGGCTAAATCCCAGAATTGTAGGG
AGCAGAGCTTCACTGGAGGGGGCTACCTCTCTCACCTCATTTGTGGCCGGCACTTTAGAG
TTTACAAGCCCTCCCACCCCCACTCACTGACACATCCTACTCTCCTATGAGTCAGCTGGG
TATTGGTATCTCCAAGATCAGAAGGGAAGACCTAGCCCCAGAGAATGAAAGAATCATCAA
GCCCACAGTACTGGCTGCAAAGCATGGAGGTAGGGCTAGTCTGGGAGCTTCCCGCATGCC
TCCTCTGCCCAGAGCCATCCCTTCCTTCTCAAGCTCTCCCCATCCCTAAGGGACCTAGAC
TTCATGCTTGAAAGCAATGCGAAGGCATCCAAGAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               322-427, - strand, RNAz p=0.999986

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               322-427, - strand, RNAz p=0.999986

Similar Transcript(s): 3 entry(ies)

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Similar Transcript(s): 3 entry(ies)

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               322-400, BovGen_10996 normal cattle brain Bos taurus cDNA clone 
(gb|CO882671.1|), blast E-value=1e-16, identity=89.87% 
               

               
               322-400, LB0288.CR_C08 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV915551.1|), 
blast E-value=1e-16, identity=89.87% 
               

               
               322-400, LB01732.CR_C05 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE333438.1|), 
blast E-value=1e-16, identity=89.87%

Similar Transcript(s): 3 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               322-400, BovGen_10996 normal cattle brain Bos taurus cDNA clone 
(gb|CO882671.1|), blast E-value=1e-16, identity=89.87% 
               

               
               322-400, LB0288.CR_C08 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV915551.1|), 
blast E-value=1e-16, identity=89.87% 
               

               
               322-400, LB01732.CR_C05 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE333438.1|), 
blast E-value=1e-16, identity=89.87%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               15-936, gnl|bosTau2|chr9 (31787061-31786133)
               

               
               15-936, gnl|Hg17|chr9 (97964345-97963376)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-936, gnl|bosTau2|chr9 (31787061-31786133)
               

               
               15-936, gnl|Hg17|chr9 (97964345-97963376)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               col (0.195008)
               

               
               duo (0.172801)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

	322-400, BovGen_10996 normal cattle brain Bos taurus cDNA clone (gb\|CO882671.1\|), blast E-value=1e-16, identity=89.87%
	322-400, LB0288.CR_C08 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV915551.1\|), blast E-value=1e-16, identity=89.87%
	322-400, LB01732.CR_C05 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|EE333438.1\|), blast E-value=1e-16, identity=89.87%

	15-936, gnl\|bosTau2\|chr9 (31787061-31786133)
	15-936, gnl\|Hg17\|chr9 (97964345-97963376)