Non-Coding RNA Search

Ss1.1-Pig4-TMW8033I18.3

Sequence:


               
               TTCCTTTTCTACTCCCTCTGTGCTCACAAGGCTGGCTGCCGGGTGGCCTCCACCATGTTG
GTGTGGAGCAAGGATGACGGTATTTCCTGGAGCTCGCCCCGAAACCTGTCCTTGGATATA
GGCACTGAGATGTTTGCCCCCGGACCTGGATCTGGCATTCAGAAACAGTGGGCGCCTCAG
AAGGGCCGGCTCATCGTGTGCGGCCATGGGACGCTGGAGCGGGACGGGGTCTTCTGCCTC
CTCAGCGATGACCACGGCGCCTCGTGGCGCTACGGAAGTGGGATCAGCGGCATCCCCTAT
GGCCAGCCCAAGCGGGAAAACGATTTCAACCCGGACGAGTGCCAGCCCTATGAGCTTCCA
GACGGCTCAGTCGTCATTAATGCCCGGAACCAGAACAACTACCACTGCCGCTGCCGAATC
GTCCTCCGCAGCTACGACGCCTGTGACACTCTGAGGCCCCGTGATGTGACCTTTGACCCC
GAGCTCGTGGACCCCGTGGTAGCGGCAGGAGCTGTAGCCACCAGCTCCGGCATCATCTTC
TTCTCCAACCCAGCCCATCCAGAGTTCCGAGTGAACTTGACCCTGCGCTGGAGCTTCAGC
AATGGTACCTCATGGCGGAAAGAGACCGTCCAGATCTGGCCGGGACCCAGTGGCTACTCC
TCGCTGGCAACCCTGGAGGGCAGTGTGGGCGGGGAGGACCAGGCCCCGCAGCTCTACGTC
CTGTATGAGAAAGGCCGGAACCGGTACACAGAGAGCATCTCCCTGGCCAAAGTCAGCGTC
TATGGGACACTCTGAGCTGTACCCAGGCCAGGGAGGGGTAGACGGCCCTGGCCTCAGCCT
CAGGACCGTGGGTCTGCAGAGGGTCTGCTGGAGGAGCCTGGAAGAGAGTTCCACCTCTTT
TAGACTGCAGCCTTTTGCAAAATCAACTTTGACTAGGAAATCACAGCATTAGGACTAAAA
ACCTGGCTTCTCCCTGGACAAGAAGGGCTCCCCACACCTGGCGGCCCTTCCCTTCCCATT
GCTGGGTCCCGGCCCCTGCCCTTTCTGCCCTCCCAGGACAGTGATTGGTCCTTTTCTTGG
GCAGGGCCAGGCGGGCCTGTAAGCAGTCAGTAAATGTGAACTCAGGGAACCGGGGAAGGC
TTACCTCCTGGAGGTAAGATGCTGGCGTTGGAGAGGGTTGGTGGAAGCCAGAAGGGCAGG
TTATTTGGTTTCTGGGGTAAGGAAGGAGGTGCATCATCTACTTTGACTCTTTGAATCAAA
ATGTGTCTAACATAACGTTTTTAATGAAAGAGAATGACTATTTGCAGAACCTCTGTGGTC
CTGCCCACGCACATCTTCATGTCTGTTTCTTCGAGTGGGTTGTGGAGAGGAGGAGCGAGT
TTGGAGGAGAGGAGGAAGCTGGAGGGCTCATTGCCGTGACAATCTAACTTTGGCCAATCA
ACTCCTCTTTATCACAGAAAAGCGGATTCTCTTCACAGGTGTAATGAGGAGGAGGCGGAG
CCCCCATAAAATGTTTAAAACGGCTGTTTCGGAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTTTTCTACTCCCTCTGTGCTCACAAGGCTGGCTGCCGGGTGGCCTCCACCATGTTG
GTGTGGAGCAAGGATGACGGTATTTCCTGGAGCTCGCCCCGAAACCTGTCCTTGGATATA
GGCACTGAGATGTTTGCCCCCGGACCTGGATCTGGCATTCAGAAACAGTGGGCGCCTCAG
AAGGGCCGGCTCATCGTGTGCGGCCATGGGACGCTGGAGCGGGACGGGGTCTTCTGCCTC
CTCAGCGATGACCACGGCGCCTCGTGGCGCTACGGAAGTGGGATCAGCGGCATCCCCTAT
GGCCAGCCCAAGCGGGAAAACGATTTCAACCCGGACGAGTGCCAGCCCTATGAGCTTCCA
GACGGCTCAGTCGTCATTAATGCCCGGAACCAGAACAACTACCACTGCCGCTGCCGAATC
GTCCTCCGCAGCTACGACGCCTGTGACACTCTGAGGCCCCGTGATGTGACCTTTGACCCC
GAGCTCGTGGACCCCGTGGTAGCGGCAGGAGCTGTAGCCACCAGCTCCGGCATCATCTTC
TTCTCCAACCCAGCCCATCCAGAGTTCCGAGTGAACTTGACCCTGCGCTGGAGCTTCAGC
AATGGTACCTCATGGCGGAAAGAGACCGTCCAGATCTGGCCGGGACCCAGTGGCTACTCC
TCGCTGGCAACCCTGGAGGGCAGTGTGGGCGGGGAGGACCAGGCCCCGCAGCTCTACGTC
CTGTATGAGAAAGGCCGGAACCGGTACACAGAGAGCATCTCCCTGGCCAAAGTCAGCGTC
TATGGGACACTCTGAGCTGTACCCAGGCCAGGGAGGGGTAGACGGCCCTGGCCTCAGCCT
CAGGACCGTGGGTCTGCAGAGGGTCTGCTGGAGGAGCCTGGAAGAGAGTTCCACCTCTTT
TAGACTGCAGCCTTTTGCAAAATCAACTTTGACTAGGAAATCACAGCATTAGGACTAAAA
ACCTGGCTTCTCCCTGGACAAGAAGGGCTCCCCACACCTGGCGGCCCTTCCCTTCCCATT
GCTGGGTCCCGGCCCCTGCCCTTTCTGCCCTCCCAGGACAGTGATTGGTCCTTTTCTTGG
GCAGGGCCAGGCGGGCCTGTAAGCAGTCAGTAAATGTGAACTCAGGGAACCGGGGAAGGC
TTACCTCCTGGAGGTAAGATGCTGGCGTTGGAGAGGGTTGGTGGAAGCCAGAAGGGCAGG
TTATTTGGTTTCTGGGGTAAGGAAGGAGGTGCATCATCTACTTTGACTCTTTGAATCAAA
ATGTGTCTAACATAACGTTTTTAATGAAAGAGAATGACTATTTGCAGAACCTCTGTGGTC
CTGCCCACGCACATCTTCATGTCTGTTTCTTCGAGTGGGTTGTGGAGAGGAGGAGCGAGT
TTGGAGGAGAGGAGGAAGCTGGAGGGCTCATTGCCGTGACAATCTAACTTTGGCCAATCA
ACTCCTCTTTATCACAGAAAAGCGGATTCTCTTCACAGGTGTAATGAGGAGGAGGCGGAG
CCCCCATAAAATGTTTAAAACGGCTGTTTCGGAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62087602|dbj|BAD92248.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62087602|dbj|BAD92248.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               160-345, gnl|bosTau2|chr23 (23463932-23463747)
               

               
               160-345, gnl|Hg17|chr6 (31936380-31936195)
               

               
               160-345, gnl|Mm7|chr17 (33031090-33031275)
               


               
               569-1450, gnl|bosTau2|chr23 (23463296-23462419)
               

               
               569-1450, gnl|Hg17|chr6 (31935701-31934817)
               

               
               569-1450, gnl|Mm7|chr17 (33031695-33032523)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-345, gnl|bosTau2|chr23 (23463932-23463747)
               

               
               160-345, gnl|Hg17|chr6 (31936380-31936195)
               

               
               160-345, gnl|Mm7|chr17 (33031090-33031275)
               


               
               569-1450, gnl|bosTau2|chr23 (23463296-23462419)
               

               
               569-1450, gnl|Hg17|chr6 (31935701-31934817)
               

               
               569-1450, gnl|Mm7|chr17 (33031695-33032523)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               cov (0.264306)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               ese (0.126502)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               ese (0.126502)
               

               
               eje (0.0988338)

	160-345, gnl\|bosTau2\|chr23 (23463932-23463747)
	160-345, gnl\|Hg17\|chr6 (31936380-31936195)
	160-345, gnl\|Mm7\|chr17 (33031090-33031275)

	569-1450, gnl\|bosTau2\|chr23 (23463296-23462419)
	569-1450, gnl\|Hg17\|chr6 (31935701-31934817)
	569-1450, gnl\|Mm7\|chr17 (33031695-33032523)

	cov (0.264306)
	mas (0.210305)
	nbm (0.198649)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	cli (0.152812)
	cag (0.151194)
	cst (0.140036)
	ese (0.126502)
	eje (0.0988338)