Ss1.1-Pig4-TMW8033I24.5
|
CCTTTGTCTCTACCAAAGCCGAGATGATCTGCAGTGGGATCCTCCCGATTGACCAGATGA
GAGATCACGTCCCAGCCATATCACTAGTTTGCCAGAATATTCCAAGACGTGTTTTAGAAG
CTACATACGGCATTGACATCATAAAGCCTAGAGAGGATGAAGATCCCCATCGACCGCCAA
CATCAGAAGAATTCTTGACAGCTTATGGATACATGCGAGGATTCATGACCGCACATGGAC
AGCCAGACCAACCTCGATCTGCACGGTACATCTTGAAGGATTACGTCAATGGCAAACTCC
TGTACTGTCACCCTCCTCCTGGGAGAGATCCCGTGACCTTTCAGCATCAATACCAGCGAC
TCCTAGAGAACAAAACGAATGGTGGGGAAGTAAAAATGCCACCAGGCAGAAATAAAAAAG
CAAATCAGATTGAAAATGTAGTGGACAAAACTTTTTTCCATCAAGAAAATGTAAGAGCTT
TGACCAAAGGAGTCCAGGCTGTGATGGGCTACAAGCCTGGGAGTGGCCTGGTGATGGCAG
CAACTGTGAGCTCTGAGAGGGGGGCTGGGAAGCCTTGGAAAAAACATGGCAACAGAAATA
AAAAAGAGAAAAGTCGTAGACTCTATAAGCACCTGGATACGTGAACTTGGGCTTCAGCTG
AGATGGCATCTGCACTGTGCATCCATGGTGCTATAGGGCGGGCCCTGCCCTTGTGATGCA
CAAGCACATCTGGCAGCCAGTTCAAGACAGAGGGACTCCTCAGAGCACCAGCTCCGACTA
GCAAAGTCATCTCAGAGCCCCAGAAACCTGCTTCTGAAGAAGGCTGAATCTAAGATGAAT
GAATAATGTGTATTTACTTGTGTAAGCCCATACACAAATGCATAGTAATTTGTAACTTGG
GGGTTTTTTTGAAAAAATATTAAAATTAAATTGCCACTTAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTTTGTCTCTACCAAAGCCGAGATGATCTGCAGTGGGATCCTCCCGATTGACCAGATGA
GAGATCACGTCCCAGCCATATCACTAGTTTGCCAGAATATTCCAAGACGTGTTTTAGAAG
CTACATACGGCATTGACATCATAAAGCCTAGAGAGGATGAAGATCCCCATCGACCGCCAA
CATCAGAAGAATTCTTGACAGCTTATGGATACATGCGAGGATTCATGACCGCACATGGAC
AGCCAGACCAACCTCGATCTGCACGGTACATCTTGAAGGATTACGTCAATGGCAAACTCC
TGTACTGTCACCCTCCTCCTGGGAGAGATCCCGTGACCTTTCAGCATCAATACCAGCGAC
TCCTAGAGAACAAAACGAATGGTGGGGAAGTAAAAATGCCACCAGGCAGAAATAAAAAAG
CAAATCAGATTGAAAATGTAGTGGACAAAACTTTTTTCCATCAAGAAAATGTAAGAGCTT
TGACCAAAGGAGTCCAGGCTGTGATGGGCTACAAGCCTGGGAGTGGCCTGGTGATGGCAG
CAACTGTGAGCTCTGAGAGGGGGGCTGGGAAGCCTTGGAAAAAACATGGCAACAGAAATA
AAAAAGAGAAAAGTCGTAGACTCTATAAGCACCTGGATACGTGAACTTGGGCTTCAGCTG
AGATGGCATCTGCACTGTGCATCCATGGTGCTATAGGGCGGGCCCTGCCCTTGTGATGCA
CAAGCACATCTGGCAGCCAGTTCAAGACAGAGGGACTCCTCAGAGCACCAGCTCCGACTA
GCAAAGTCATCTCAGAGCCCCAGAAACCTGCTTCTGAAGAAGGCTGAATCTAAGATGAAT
GAATAATGTGTATTTACTTGTGTAAGCCCATACACAAATGCATAGTAATTTGTAACTTGG
GGGTTTTTTTGAAAAAATATTAAAATTAAATTGCCACTTAAAAAAAAAAAAAAAAAAAAA |
|
gi|61886797|ref|XP_600904.1| |
Protein identifier
|
gi|61886797|ref|XP_600904.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
87-210, gnl|bosTau2|chr1 (43672777-43672900) |
|
87-210, gnl|canFam2|chr33 (34155482-34155335) |
|
87-210, gnl|danRer3|chr15 (4142373-4142524) |
|
87-210, gnl|dasNov1|scaffold_51058 (40361-40508) |
|
87-210, gnl|echTel1|scaffold_291296 (40078-40225) |
|
87-210, gnl|fr1|chrUn (33658618-33658751) |
|
87-210, gnl|galGal2|chr9 (12236420-12236273) |
|
87-210, gnl|hg17|chr3 (195850701-195850847) |
|
87-210, gnl|Hg17|chr3 (195850830-195850707) |
|
87-210, gnl|loxAfr1|scaffold_3679 (86621-86768) |
|
87-210, gnl|mm7|chr16 (30241720-30241867) |
|
87-210, gnl|Mm7|chr16 (30241849-30241726) |
|
87-210, gnl|panTro1|chr2 (199978175-199978321) |
|
87-210, gnl|rheMac2|chr2 (186878663-186878809) |
|
87-210, gnl|rn3|chr11 (72103335-72103188) |
|
87-210, gnl|tetNig1|chr1 (12366069-12366222) |
|
87-210, gnl|xenTro1|scaffold_344 (159768-159915) |
| |
|
453-939, gnl|bosTau2|chr1 (43678851-43679323) |
|
453-939, gnl|Mm7|chr16 (30235886-30235384) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
87-210, gnl|bosTau2|chr1 (43672777-43672900) |
|
87-210, gnl|canFam2|chr33 (34155482-34155335) |
|
87-210, gnl|danRer3|chr15 (4142373-4142524) |
|
87-210, gnl|dasNov1|scaffold_51058 (40361-40508) |
|
87-210, gnl|echTel1|scaffold_291296 (40078-40225) |
|
87-210, gnl|fr1|chrUn (33658618-33658751) |
|
87-210, gnl|galGal2|chr9 (12236420-12236273) |
|
87-210, gnl|hg17|chr3 (195850701-195850847) |
|
87-210, gnl|Hg17|chr3 (195850830-195850707) |
|
87-210, gnl|loxAfr1|scaffold_3679 (86621-86768) |
|
87-210, gnl|mm7|chr16 (30241720-30241867) |
|
87-210, gnl|Mm7|chr16 (30241849-30241726) |
|
87-210, gnl|panTro1|chr2 (199978175-199978321) |
|
87-210, gnl|rheMac2|chr2 (186878663-186878809) |
|
87-210, gnl|rn3|chr11 (72103335-72103188) |
|
87-210, gnl|tetNig1|chr1 (12366069-12366222) |
|
87-210, gnl|xenTro1|scaffold_344 (159768-159915) |
| |
|
453-939, gnl|bosTau2|chr1 (43678851-43679323) |
|
453-939, gnl|Mm7|chr16 (30235886-30235384) |
|
fat (0.294855) |
|
med (0.232504) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
fhi (0.169578) |
|
cag (0.151194) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
fat (0.294855) |
|
med (0.232504) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
fhi (0.169578) |
|
cag (0.151194) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
ebs (0.118301) |
