Ss1.1-Pig4-TMW8033J01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTCAGAGGTAATCCTGGCAGAAGATAAGAGGACTCAGAAGCTGGTGGCCATCAAATGT ATCGCCAAGAAGGCTCTGGAAGGCAAGGAGGGCAGCATGGAGAATGAGATCGCTGTCCTA CACAAAATCAAGCACCCCAACATTGTAGCCCTGGATGACATCTATGAGAGTGGGGGACAC CTCTACCTCATCATGCAGCTCGTGTCAGGTGGGGAGCTGTTTGACCGAATTGTAGAAAAA GGCTTCTATACAGAGCGGGATGCCAGCCGCCTCATCTTTCAAGTGCTGGACGCCGTCAAG TACCTGCACGATCTGGGCATCGTACACCGGGACCTCAAGCCAGAGAATCTGCTGTACTAC AGCCTGGATGAAGACTCCAAGATCATGATCTCTGACTTTGGCCTCTCCAAGATGGAGGAC CCTGGCAGCGTGCTCTCCACAGCATGCGGGACCCCAGGATATGTGGCCCCAGAGGTGCTG GCTCAGAAGCCCTACAGCAAGGCAGTGGATTGCTGGTCCATTGGAGTCATTGCCTATATC CTGCTCTGTGGTTACCCCCCCTTCTATGACGAGAATGATGCCAAACTCTTTGAACAGATT TTGAAGGCCGAGTACGAGTTTGACTCTCCTTACTGGGACGACATCTCTGACTCCGCCAAA GACTTCATCCGACATTTGATGGAGAAGGATCCAGAGAAGAGGTTTACCTGTGACCAGGCC TTGCAGCACCCCTGGATTGCAGGAGATACGGCTCTAGATAAGAATATTCACCAGTCAGTG AGCGAGCAGATCAAGAAGAACTTTGCCAAGAGCAAGTGGAAGCAAGCCTTCAATGCCACA GCTGTGGTGCGGCACATGAGGAAGCTACAGCTGGGCACCAGCCAGGAGGGGCAGGGACAG ACGGCCAGCCATGGGGAGCTGCTAACACCAGCAGCTGGGGGTTCTGCGGCTGGCTGTTGC TGTCGAGACTGCTGCGTGGAGCCAGGTCCAGAAGTGTCTCCCACACTGCCCCCCCAGCTC TAGGGGCTGGGATCCCCTATGTGGGAGGGCCTGGGGGTGGCCTGCTCCCACTCCCTCCAT AAACTGGGGAGTTACCCTGCCTCACCCCCCTCTGAAACCCTTTGCCTACCATACCTCCAC TGCCTTTTCCATACAAATGTTTCTATTTTATTGTTCCTTCTTATAATAAAGGGAAGAAAT TAAAACCACAGGTAGCTCTGTCTCCACACACAACCCCCATCCCAACACTGTTGTGCTTGA TTTGAGGGTGCCTGGCCCCTGAGATAGTTGCAGGGAATCCCCCTTTCCAACATGAGACTG GATAGGAGAGGTGTTGGGGGAATCCCTCTGTCCAAGGCCCCCATCTAGCCTACCGGGCCT GTGCATCTTTTTCTGCGCTTTGCTGGTGGCTCCTGAGCTCGGTGGGGTTGGCGCAGCTCA GCACTGAACAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTCAGAGGTAATCCTGGCAGAAGATAAGAGGACTCAGAAGCTGGTGGCCATCAAATGT ATCGCCAAGAAGGCTCTGGAAGGCAAGGAGGGCAGCATGGAGAATGAGATCGCTGTCCTA CACAAAATCAAGCACCCCAACATTGTAGCCCTGGATGACATCTATGAGAGTGGGGGACAC CTCTACCTCATCATGCAGCTCGTGTCAGGTGGGGAGCTGTTTGACCGAATTGTAGAAAAA GGCTTCTATACAGAGCGGGATGCCAGCCGCCTCATCTTTCAAGTGCTGGACGCCGTCAAG TACCTGCACGATCTGGGCATCGTACACCGGGACCTCAAGCCAGAGAATCTGCTGTACTAC AGCCTGGATGAAGACTCCAAGATCATGATCTCTGACTTTGGCCTCTCCAAGATGGAGGAC CCTGGCAGCGTGCTCTCCACAGCATGCGGGACCCCAGGATATGTGGCCCCAGAGGTGCTG GCTCAGAAGCCCTACAGCAAGGCAGTGGATTGCTGGTCCATTGGAGTCATTGCCTATATC CTGCTCTGTGGTTACCCCCCCTTCTATGACGAGAATGATGCCAAACTCTTTGAACAGATT TTGAAGGCCGAGTACGAGTTTGACTCTCCTTACTGGGACGACATCTCTGACTCCGCCAAA GACTTCATCCGACATTTGATGGAGAAGGATCCAGAGAAGAGGTTTACCTGTGACCAGGCC TTGCAGCACCCCTGGATTGCAGGAGATACGGCTCTAGATAAGAATATTCACCAGTCAGTG AGCGAGCAGATCAAGAAGAACTTTGCCAAGAGCAAGTGGAAGCAAGCCTTCAATGCCACA GCTGTGGTGCGGCACATGAGGAAGCTACAGCTGGGCACCAGCCAGGAGGGGCAGGGACAG ACGGCCAGCCATGGGGAGCTGCTAACACCAGCAGCTGGGGGTTCTGCGGCTGGCTGTTGC TGTCGAGACTGCTGCGTGGAGCCAGGTCCAGAAGTGTCTCCCACACTGCCCCCCCAGCTC TAGGGGCTGGGATCCCCTATGTGGGAGGGCCTGGGGGTGGCCTGCTCCCACTCCCTCCAT AAACTGGGGAGTTACCCTGCCTCACCCCCCTCTGAAACCCTTTGCCTACCATACCTCCAC TGCCTTTTCCATACAAATGTTTCTATTTTATTGTTCCTTCTTATAATAAAGGGAAGAAAT TAAAACCACAGGTAGCTCTGTCTCCACACACAACCCCCATCCCAACACTGTTGTGCTTGA TTTGAGGGTGCCTGGCCCCTGAGATAGTTGCAGGGAATCCCCCTTTCCAACATGAGACTG GATAGGAGAGGTGTTGGGGGAATCCCTCTGTCCAAGGCCCCCATCTAGCCTACCGGGCCT GTGCATCTTTTTCTGCGCTTTGCTGGTGGCTCCTGAGCTCGGTGGGGTTGGCGCAGCTCA GCACTGAACAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-120, + strand, RNAz p=0.624153 | |
| 988-1165, - strand, RNAz p=0.999458 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-120, + strand, RNAz p=0.624153 | |
| 988-1165, - strand, RNAz p=0.999458 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_016819, - |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 1-125, gnl|bosTau2|chr22 (11912514-11912390) | |
| 1-125, gnl|canFam2|chr20 (11482778-11482622) | |
| 1-125, gnl|danRer3|chr6 (28276956-28277100) | |
| 1-125, gnl|dasNov1|scaffold_250060 (3516-3668) | |
| 1-125, gnl|echTel1|scaffold_311188 (35061-35238) | |
| 1-125, gnl|fr1|chrUn (44792022-44792160) | |
| 1-125, gnl|galGal2|chr12 (11489210-11489365) | |
| 1-125, gnl|hg17|chr3 (9782433-9782589) | |
| 1-125, gnl|Hg17|chr3 (9782567-9782443) | |
| 1-125, gnl|loxAfr1|scaffold_19511 (32929-33085) | |
| 1-125, gnl|mm7|chr6 (113501216-113501365) | |
| 1-125, gnl|Mm7|chr6 (113501344-113501220) | |
| 1-125, gnl|monDom2|scaffold_5 (36565520-36565666) | |
| 1-125, gnl|oryCun1|scaffold_142753 (4624-4468) | |
| 1-125, gnl|panTro1|chr2 (10162008-10162164) | |
| 1-125, gnl|rheMac2|chr2 (51230922-51230766) | |
| 1-125, gnl|rn3|chrX (159631638-159631780) | |
| 1-125, gnl|tetNig1|chr11 (4926765-4926627) | |
| 1-125, gnl|xenTro1|scaffold_1005 (248374-248527) | |
| 133-575, gnl|bosTau2|chr18 (14958800-14958352) | |
| 133-575, gnl|canFam2|chr5 (84591200-84591612) | |
| 133-575, gnl|danRer3|chr18 (20979689-20979277) | |
| 133-575, gnl|dasNov1|scaffold_3445 (88511-88925) | |
| 133-575, gnl|echTel1|scaffold_166784 (469-881) | |
| 133-575, gnl|fr1|chrUn (168727634-168728046) | |
| 133-575, gnl|galGal2|chr11 (937800-937388) | |
| 133-575, gnl|Hg17|chr16 (66500607-66501055) | |
| 133-575, gnl|hg17|chr5 (54688244-54688664) | |
| 133-575, gnl|loxAfr1|scaffold_972 (12163-12575) | |
| 133-575, gnl|mm7|chr8 (104512449-104512037) | |
| 133-575, gnl|Mm7|chr8 (104511998-104512446) | |
| 133-575, gnl|monDom2|scaffold_11 (60323672-60323262) | |
| 133-575, gnl|oryCun1|scaffold_174091 (52655-52243) | |
| 133-575, gnl|panTro1|chr4 (61521063-61520643) | |
| 133-575, gnl|rheMac2|chr6 (53013902-53014318) | |
| 133-575, gnl|rn3|chr19 (35757575-35757163) | |
| 133-575, gnl|tetNig1|chrUn_random (18326962-18327374) | |
| 133-575, gnl|xenTro1|scaffold_984 (352368-351956) | |
| 202-339, gnl|bosTau2|chr16 (50627280-50627417) | |
| 202-339, gnl|canFam2|chr7 (11220343-11220516) | |
| 202-339, gnl|danRer3|chr23 (52456057-52455892) | |
| 202-339, gnl|dasNov1|scaffold_138512 (328-162) | |
| 202-339, gnl|echTel1|scaffold_276964 (40596-40767) | |
| 202-339, gnl|fr1|chrUn (207803021-207803191) | |
| 202-339, gnl|galGal2|chr26 (1688942-1689112) | |
| 202-339, gnl|hg17|chr1 (206167245-206167420) | |
| 202-339, gnl|Hg17|chr1 (206167277-206167414) | |
| 202-339, gnl|loxAfr1|scaffold_6769 (13949-14120) | |
| 202-339, gnl|mm7|chr1 (192907768-192907607) | |
| 202-339, gnl|Mm7|chr1 (192907745-192907608) | |
| 202-339, gnl|monDom2|scaffold_13 (12572625-12572790) | |
| 202-339, gnl|oryCun1|scaffold_209827 (47554-47727) | |
| 202-339, gnl|panTro1|chr1 (189781572-189781744) | |
| 202-339, gnl|rheMac2|chr1 (160797490-160797318) | |
| 202-339, gnl|rn3|chr13 (109390324-109390163) | |
| 202-339, gnl|tetNig1|chrUn_random (5111101-5111257) | |
| 202-339, gnl|xenTro1|scaffold_138 (1285451-1285594) | |
| 821-942, gnl|bosTau2|chr22 (11906899-11906778) | |
| 821-942, gnl|Hg17|chr3 (9774532-9774411) | |
| 821-942, gnl|Mm7|chr6 (113495561-113495440) | |
| 948-1330, gnl|bosTau2|chr22 (11906665-11906266) | |
| 948-1330, gnl|Hg17|chr3 (9774298-9773893) | |
| 948-1330, gnl|Mm7|chr6 (113495329-113494918) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-125, gnl|bosTau2|chr22 (11912514-11912390) | |
| 1-125, gnl|canFam2|chr20 (11482778-11482622) | |
| 1-125, gnl|danRer3|chr6 (28276956-28277100) | |
| 1-125, gnl|dasNov1|scaffold_250060 (3516-3668) | |
| 1-125, gnl|echTel1|scaffold_311188 (35061-35238) | |
| 1-125, gnl|fr1|chrUn (44792022-44792160) | |
| 1-125, gnl|galGal2|chr12 (11489210-11489365) | |
| 1-125, gnl|hg17|chr3 (9782433-9782589) | |
| 1-125, gnl|Hg17|chr3 (9782567-9782443) | |
| 1-125, gnl|loxAfr1|scaffold_19511 (32929-33085) | |
| 1-125, gnl|mm7|chr6 (113501216-113501365) | |
| 1-125, gnl|Mm7|chr6 (113501344-113501220) | |
| 1-125, gnl|monDom2|scaffold_5 (36565520-36565666) | |
| 1-125, gnl|oryCun1|scaffold_142753 (4624-4468) | |
| 1-125, gnl|panTro1|chr2 (10162008-10162164) | |
| 1-125, gnl|rheMac2|chr2 (51230922-51230766) | |
| 1-125, gnl|rn3|chrX (159631638-159631780) | |
| 1-125, gnl|tetNig1|chr11 (4926765-4926627) | |
| 1-125, gnl|xenTro1|scaffold_1005 (248374-248527) | |
| 133-575, gnl|bosTau2|chr18 (14958800-14958352) | |
| 133-575, gnl|canFam2|chr5 (84591200-84591612) | |
| 133-575, gnl|danRer3|chr18 (20979689-20979277) | |
| 133-575, gnl|dasNov1|scaffold_3445 (88511-88925) | |
| 133-575, gnl|echTel1|scaffold_166784 (469-881) | |
| 133-575, gnl|fr1|chrUn (168727634-168728046) | |
| 133-575, gnl|galGal2|chr11 (937800-937388) | |
| 133-575, gnl|Hg17|chr16 (66500607-66501055) | |
| 133-575, gnl|hg17|chr5 (54688244-54688664) | |
| 133-575, gnl|loxAfr1|scaffold_972 (12163-12575) | |
| 133-575, gnl|mm7|chr8 (104512449-104512037) | |
| 133-575, gnl|Mm7|chr8 (104511998-104512446) | |
| 133-575, gnl|monDom2|scaffold_11 (60323672-60323262) | |
| 133-575, gnl|oryCun1|scaffold_174091 (52655-52243) | |
| 133-575, gnl|panTro1|chr4 (61521063-61520643) | |
| 133-575, gnl|rheMac2|chr6 (53013902-53014318) | |
| 133-575, gnl|rn3|chr19 (35757575-35757163) | |
| 133-575, gnl|tetNig1|chrUn_random (18326962-18327374) | |
| 133-575, gnl|xenTro1|scaffold_984 (352368-351956) | |
| 202-339, gnl|bosTau2|chr16 (50627280-50627417) | |
| 202-339, gnl|canFam2|chr7 (11220343-11220516) | |
| 202-339, gnl|danRer3|chr23 (52456057-52455892) | |
| 202-339, gnl|dasNov1|scaffold_138512 (328-162) | |
| 202-339, gnl|echTel1|scaffold_276964 (40596-40767) | |
| 202-339, gnl|fr1|chrUn (207803021-207803191) | |
| 202-339, gnl|galGal2|chr26 (1688942-1689112) | |
| 202-339, gnl|hg17|chr1 (206167245-206167420) | |
| 202-339, gnl|Hg17|chr1 (206167277-206167414) | |
| 202-339, gnl|loxAfr1|scaffold_6769 (13949-14120) | |
| 202-339, gnl|mm7|chr1 (192907768-192907607) | |
| 202-339, gnl|Mm7|chr1 (192907745-192907608) | |
| 202-339, gnl|monDom2|scaffold_13 (12572625-12572790) | |
| 202-339, gnl|oryCun1|scaffold_209827 (47554-47727) | |
| 202-339, gnl|panTro1|chr1 (189781572-189781744) | |
| 202-339, gnl|rheMac2|chr1 (160797490-160797318) | |
| 202-339, gnl|rn3|chr13 (109390324-109390163) | |
| 202-339, gnl|tetNig1|chrUn_random (5111101-5111257) | |
| 202-339, gnl|xenTro1|scaffold_138 (1285451-1285594) | |
| 821-942, gnl|bosTau2|chr22 (11906899-11906778) | |
| 821-942, gnl|Hg17|chr3 (9774532-9774411) | |
| 821-942, gnl|Mm7|chr6 (113495561-113495440) | |
| 948-1330, gnl|bosTau2|chr22 (11906665-11906266) | |
| 948-1330, gnl|Hg17|chr3 (9774298-9773893) | |
| 948-1330, gnl|Mm7|chr6 (113495329-113494918) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| eep (0.367692) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jca (0.11396) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.367692) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jca (0.11396) |