Non-Coding RNA Search

Ss1.1-Pig4-TMW8033J05.5

Sequence:


               
               AAAGTGATAACAAAACCATTCTGGAAAACGTATCCCATAGAAGCTGATGTTTAACATACG
AGAAAAAACACACACACACAAAAAACCAAGGTATTGTCTATGTTTCTTCAGTACTTTTTT
GATGCTGTGTACTGAGTGTAAGGTATTTGTCATCTTACATTAGAAAGCGCAGTAAACCAA
GTTGAACGTGGATTATCGTAAATGTCCAACTGTGCTAACTAGGCTTCAAAGTAAAAAGTT
TTCCTTTCATCTTTGACTGTGAGATGTGAAAGGGAGGCAGCCTGTTCCAACAGGAAACAA
TAGACAAAAGGTTGCCAACTCGCATGAGCTACCTCCCTCTTTTCATAAAGTATTTTTGAC
ATATCTGTCAGCCCACCTGTCTGTGGGGGTGCATCGAGAATATATAAAGTTTCTTTGACA
CACAGGAGAAATAATCACCAATATGAATTCACCAATACGAATTTAAAAAAAAAACAAAAA
CAAAAACAGCATAACCCCTCTACTTATAAACAAGGCTTGGGGGTTTTTTAAGTGTGTGTA
AATATATACAGACACACGTATCAAATACAAAATTTTAAAAATTGAGGAGCGCGTCAAATG
GCGGAAAAAAAAAAAAAAAACCTCTTAAATTTCTTTCAAAAAGTAGCTTCTGTTAAAAGT
GGAATTCAGTATGCACATACCACATGCAGATATGGAGACTCATACTGAATTCGGTGGATA
AGGGCTAGGAATTTTGAGCAACTAAATTTGTCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTGATAACAAAACCATTCTGGAAAACGTATCCCATAGAAGCTGATGTTTAACATACG
AGAAAAAACACACACACACAAAAAACCAAGGTATTGTCTATGTTTCTTCAGTACTTTTTT
GATGCTGTGTACTGAGTGTAAGGTATTTGTCATCTTACATTAGAAAGCGCAGTAAACCAA
GTTGAACGTGGATTATCGTAAATGTCCAACTGTGCTAACTAGGCTTCAAAGTAAAAAGTT
TTCCTTTCATCTTTGACTGTGAGATGTGAAAGGGAGGCAGCCTGTTCCAACAGGAAACAA
TAGACAAAAGGTTGCCAACTCGCATGAGCTACCTCCCTCTTTTCATAAAGTATTTTTGAC
ATATCTGTCAGCCCACCTGTCTGTGGGGGTGCATCGAGAATATATAAAGTTTCTTTGACA
CACAGGAGAAATAATCACCAATATGAATTCACCAATACGAATTTAAAAAAAAAACAAAAA
CAAAAACAGCATAACCCCTCTACTTATAAACAAGGCTTGGGGGTTTTTTAAGTGTGTGTA
AATATATACAGACACACGTATCAAATACAAAATTTTAAAAATTGAGGAGCGCGTCAAATG
GCGGAAAAAAAAAAAAAAAACCTCTTAAATTTCTTTCAAAAAGTAGCTTCTGTTAAAAGT
GGAATTCAGTATGCACATACCACATGCAGATATGGAGACTCATACTGAATTCGGTGGATA
AGGGCTAGGAATTTTGAGCAACTAAATTTGTCATTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               161-437, - strand, RNAz p=0.992237
               

               
               478-586, + strand, RNAz p=0.855734

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-437, - strand, RNAz p=0.992237
               

               
               478-586, + strand, RNAz p=0.855734

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               221-286, + strand, RNAmicro p=0.918368

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               221-286, + strand, RNAmicro p=0.918368

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               177-430, DB351736 UTERU2 Homo sapiens cDNA clone UTERU2021927 3', mRNA 
(dbj|DB351736.1|), blast E-value=0, identity=91.34% 
               

               
               177-430, AL526560 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens 
(emb|AL526560.3|), blast E-value=0, identity=91.34% 
               

               
               164-437, AM018003 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007413n06 
(emb|AM018003.1|), blast E-value=0, identity=89.82% 
               

               
               164-437, AM018825 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007413n06 
(emb|AM018825.1|), blast E-value=0, identity=89.82% 
               

               
               177-430, 601458137F1 NIH_MGC_66 Homo sapiens cDNA clone IMAGE (gb|BF036139.1|), 
blast E-value=0, identity=91.34% 
               

               
               177-430, 602629819F1 NCI_CGAP_Skn4 Homo sapiens cDNA clone IMAGE 
(gb|BG681880.1|), blast E-value=0, identity=91.34%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               177-430, DB351736 UTERU2 Homo sapiens cDNA clone UTERU2021927 3', mRNA 
(dbj|DB351736.1|), blast E-value=0, identity=91.34% 
               

               
               177-430, AL526560 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens 
(emb|AL526560.3|), blast E-value=0, identity=91.34% 
               

               
               164-437, AM018003 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007413n06 
(emb|AM018003.1|), blast E-value=0, identity=89.82% 
               

               
               164-437, AM018825 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007413n06 
(emb|AM018825.1|), blast E-value=0, identity=89.82% 
               

               
               177-430, 601458137F1 NIH_MGC_66 Homo sapiens cDNA clone IMAGE (gb|BF036139.1|), 
blast E-value=0, identity=91.34% 
               

               
               177-430, 602629819F1 NCI_CGAP_Skn4 Homo sapiens cDNA clone IMAGE 
(gb|BG681880.1|), blast E-value=0, identity=91.34%

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of AK001124, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK001124, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-756, gnl|bosTau2|chrX (32413-31692)
               

               
               1-756, gnl|Hg17|chrX (116814575-116813862)
               

               
               1-756, gnl|Mm7|chrX (21653344-21652641)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chrX (32413-31692)
               

               
               1-756, gnl|Hg17|chrX (116814575-116813862)
               

               
               1-756, gnl|Mm7|chrX (21653344-21652641)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               ebs (0.236602)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               eje (0.0988338)

	161-437, - strand, RNAz p=0.992237
	478-586, + strand, RNAz p=0.855734

	177-430, DB351736 UTERU2 Homo sapiens cDNA clone UTERU2021927 3', mRNA (dbj\|DB351736.1\|), blast E-value=0, identity=91.34%
	177-430, AL526560 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens (emb\|AL526560.3\|), blast E-value=0, identity=91.34%
	164-437, AM018003 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007413n06 (emb\|AM018003.1\|), blast E-value=0, identity=89.82%
	164-437, AM018825 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007413n06 (emb\|AM018825.1\|), blast E-value=0, identity=89.82%
	177-430, 601458137F1 NIH_MGC_66 Homo sapiens cDNA clone IMAGE (gb\|BF036139.1\|), blast E-value=0, identity=91.34%
	177-430, 602629819F1 NCI_CGAP_Skn4 Homo sapiens cDNA clone IMAGE (gb\|BG681880.1\|), blast E-value=0, identity=91.34%

	1-756, gnl\|bosTau2\|chrX (32413-31692)
	1-756, gnl\|Hg17\|chrX (116814575-116813862)
	1-756, gnl\|Mm7\|chrX (21653344-21652641)

	ebs (0.236602)
	rec (0.17307)
	lin (0.145603)
	sug (0.127291)
	eje (0.0988338)