Non-Coding RNA Search

Ss1.1-Pig4-TMW8033J07.3

Sequence:


               
               GGAAACAAAACGAGCACTGAAGTCCAAAACCGATGTGGAAGAAAAAATGTACAGTGTAAC
CAAAGAACGAGATGATCTAAAAAACAAACTGAAAGCAGAAGAGGAGAAAGGAAGTGATCT
CCTGTCCAAAGTTAACATGTTGAAAAATAGGCTTCAATCATTGGAAGCAATTGAGAAAGA
CTTCCAAAAAACCAAATTAAATCAAGATTCTAGTAAGTCCACAACAGTATTACACCAAGA
AAACAATAAGATTAAAGAGCTCTCTCAAGAAGTGGAAAGACTGAAACTGAAGCTAAAGGA
TATGAAAGCCATTGAGGATGACCTCATGAAAACTGAAGATGAATATGAAACTCTAGAACG
AAGGTATGCTAATGAACGAGACAAAGCTCAGTTTTTATCTGAAGAGTTGGAGCATGTTAA
AATGGAACTTGCCAAGTACAAGTTAGCAGAAAAGACAGAGTCTAGCCATGAACAATGGCT
TTTCAAAAGGCTTCAAGAAGAAGAAGCTAAATCAGGGCACCTCTCAAAAGAAGTGGATGC
ACTTAAAGAGAAAATTCATGAATACATGGCAACCGAGGACCTGATATGTCACCTCCAGGG
AGATCATTCTCTTTTGCAAAAGAAACTCAATCAACAAGAAAACAGGAACAGAGATTTAGG
AAGAGAGATTGAAAACCTCACTAAAGAGTTAGAGCGATACCGTCATTTCAGTAAGAGCCT
TCGGCCCAGTCTGAATGGAAGAAGAATATCTGACCCTCAAGTATTTTCTAAGGAAGTTCA
AACAGAAGCAGTAGACAATGAGCCACCTGATTACAAGAGTCTCATTCCTCTGGAACGAGC
AGTCATCAATGGTCAGTTATATGAGGAGAGTGAGGACCAGGAAGATGATCCTAATGATGA
GGAATCTGTACTGTCCTTCAAATGCAACTCATCTACTCCCTGTCCTGTTAACAGGAAGCT
ATGGATTCCTTGGATGAAGTCCAAGGAGGGCCATCCTCAGAATGGAAAAATACAAACTAA
ACCCAATGGCAACTTCGTGCAACCTGAGGATCTAGTACTAAGCCACACACCTGAGCAGCC
ACTTCATATAAAGGTTACCCCAGACCATGTCCAGAACACAGCCACTCTTGAAATAACAAG
TCCGACCACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAACAAAACGAGCACTGAAGTCCAAAACCGATGTGGAAGAAAAAATGTACAGTGTAAC
CAAAGAACGAGATGATCTAAAAAACAAACTGAAAGCAGAAGAGGAGAAAGGAAGTGATCT
CCTGTCCAAAGTTAACATGTTGAAAAATAGGCTTCAATCATTGGAAGCAATTGAGAAAGA
CTTCCAAAAAACCAAATTAAATCAAGATTCTAGTAAGTCCACAACAGTATTACACCAAGA
AAACAATAAGATTAAAGAGCTCTCTCAAGAAGTGGAAAGACTGAAACTGAAGCTAAAGGA
TATGAAAGCCATTGAGGATGACCTCATGAAAACTGAAGATGAATATGAAACTCTAGAACG
AAGGTATGCTAATGAACGAGACAAAGCTCAGTTTTTATCTGAAGAGTTGGAGCATGTTAA
AATGGAACTTGCCAAGTACAAGTTAGCAGAAAAGACAGAGTCTAGCCATGAACAATGGCT
TTTCAAAAGGCTTCAAGAAGAAGAAGCTAAATCAGGGCACCTCTCAAAAGAAGTGGATGC
ACTTAAAGAGAAAATTCATGAATACATGGCAACCGAGGACCTGATATGTCACCTCCAGGG
AGATCATTCTCTTTTGCAAAAGAAACTCAATCAACAAGAAAACAGGAACAGAGATTTAGG
AAGAGAGATTGAAAACCTCACTAAAGAGTTAGAGCGATACCGTCATTTCAGTAAGAGCCT
TCGGCCCAGTCTGAATGGAAGAAGAATATCTGACCCTCAAGTATTTTCTAAGGAAGTTCA
AACAGAAGCAGTAGACAATGAGCCACCTGATTACAAGAGTCTCATTCCTCTGGAACGAGC
AGTCATCAATGGTCAGTTATATGAGGAGAGTGAGGACCAGGAAGATGATCCTAATGATGA
GGAATCTGTACTGTCCTTCAAATGCAACTCATCTACTCCCTGTCCTGTTAACAGGAAGCT
ATGGATTCCTTGGATGAAGTCCAAGGAGGGCCATCCTCAGAATGGAAAAATACAAACTAA
ACCCAATGGCAACTTCGTGCAACCTGAGGATCTAGTACTAAGCCACACACCTGAGCAGCC
ACTTCATATAAAGGTTACCCCAGACCATGTCCAGAACACAGCCACTCTTGAAATAACAAG
TCCGACCACAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1297319|gb|AAA98972.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1297319|gb|AAA98972.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               80-199, - strand, RNAz p=0.516783
               

               
               400-559, - strand, RNAz p=0.916105
               

               
               640-759, - strand, RNAz p=0.863622
               

               
               880-1079, - strand, RNAz p=0.993987

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.516783
               

               
               400-559, - strand, RNAz p=0.916105
               

               
               640-759, - strand, RNAz p=0.863622
               

               
               880-1079, - strand, RNAz p=0.993987

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1152, gnl|bosTau2|chr1 (23570663-23569512)
               

               
               1-1152, gnl|Hg17|chr3 (101051587-101050436)
               

               
               1-1152, gnl|Mm7|chr16 (57432192-57433343)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1152, gnl|bosTau2|chr1 (23570663-23569512)
               

               
               1-1152, gnl|Hg17|chr3 (101051587-101050436)
               

               
               1-1152, gnl|Mm7|chr16 (57432192-57433343)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)

	80-199, - strand, RNAz p=0.516783
	400-559, - strand, RNAz p=0.916105
	640-759, - strand, RNAz p=0.863622
	880-1079, - strand, RNAz p=0.993987

	1-1152, gnl\|bosTau2\|chr1 (23570663-23569512)
	1-1152, gnl\|Hg17\|chr3 (101051587-101050436)
	1-1152, gnl\|Mm7\|chr16 (57432192-57433343)

	tbr (0.154178)
	liv (0.146284)
	spl (0.143184)
	ste (0.135208)
	nmm (0.132802)
	jca (0.11396)