Non-Coding RNA Search

Ss1.1-Pig4-TMW8033K03.3

Sequence:


               
               TGTTCAAAGCAGCCATTGACTCCTCACCCAGCCATTAGACTTGAATATGATTTCCTTCAA
AGGGTAGACGGGTCTATCATTACCTAACCTTCTGTGATCATCCGGGAAATCCAAGATTGA
TAAAGGAAATGCCACTTAACTGCTGAAGACACCATCCATGGGTAGCAAGTGCAAGAGGGG
ACTCAAAGATCTCCACTTTACTGGAGAAACAGTCACAAATTTTCAAGATGCTCTTAGACC
ATATGTGCATTTGGGGGACTCTTGTCTTTGCTAGCATCCTCAGGTGGGTTCAGAATGGCT
CTCTGAAATGCCTGGGAAAAAACGAGAGTTCCTTTCCCAAACAAATATCCATCATGGCCA
CTAATCTTTAGTTTGGGCTTATGGGTGTTTCCATAACATCCCCAAGTGCCCCCTCTACCC
TAGTCCTGTTCCTCTGGGCAGTAGCTCTAGGGAAACATAGGTATTAGATTGCTGTGAAAA
TTTCAGAGTTACTACTTAAAAAACTCGGGGCGCTTCTTGGCCAATCTCTGAAGCTGGGTC
TCCTTAGGAGATGGTATAGAAAAAATCAGGTTCTATTTTAAGCAGTCAGCAGAGATCACT
ATTGTACAGACATGAGAGACATATATATATATATTTCTGTAGTAGTGCCACGGTCAGACT
GGCCAAAGACCAAATATTCCAGGGTCCCCAAGAGGTTTGTCCTTATACATCATTGTGTCT
TTAGGCCCAAGTAGGATTATGAAGCTTTTCCCAAAGATACAGGGGTGGGTAGGAAGGGTA
ATGTGGTCATCGGAGTGGGGGCCGGAACATAATGAGTGCTCAATAAATACAGAATAATGA
GAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTCAAAGCAGCCATTGACTCCTCACCCAGCCATTAGACTTGAATATGATTTCCTTCAA
AGGGTAGACGGGTCTATCATTACCTAACCTTCTGTGATCATCCGGGAAATCCAAGATTGA
TAAAGGAAATGCCACTTAACTGCTGAAGACACCATCCATGGGTAGCAAGTGCAAGAGGGG
ACTCAAAGATCTCCACTTTACTGGAGAAACAGTCACAAATTTTCAAGATGCTCTTAGACC
ATATGTGCATTTGGGGGACTCTTGTCTTTGCTAGCATCCTCAGGTGGGTTCAGAATGGCT
CTCTGAAATGCCTGGGAAAAAACGAGAGTTCCTTTCCCAAACAAATATCCATCATGGCCA
CTAATCTTTAGTTTGGGCTTATGGGTGTTTCCATAACATCCCCAAGTGCCCCCTCTACCC
TAGTCCTGTTCCTCTGGGCAGTAGCTCTAGGGAAACATAGGTATTAGATTGCTGTGAAAA
TTTCAGAGTTACTACTTAAAAAACTCGGGGCGCTTCTTGGCCAATCTCTGAAGCTGGGTC
TCCTTAGGAGATGGTATAGAAAAAATCAGGTTCTATTTTAAGCAGTCAGCAGAGATCACT
ATTGTACAGACATGAGAGACATATATATATATATTTCTGTAGTAGTGCCACGGTCAGACT
GGCCAAAGACCAAATATTCCAGGGTCCCCAAGAGGTTTGTCCTTATACATCATTGTGTCT
TTAGGCCCAAGTAGGATTATGAAGCTTTTCCCAAAGATACAGGGGTGGGTAGGAAGGGTA
ATGTGGTCATCGGAGTGGGGGCCGGAACATAATGAGTGCTCAATAAATACAGAATAATGA
GAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-545, gnl|bosTau2|chr21 (34386084-34385546)
               

               
               1-545, gnl|Hg17|chr15 (41613854-41613317)
               

               
               1-545, gnl|Mm7|chr2 (121052237-121051763)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-545, gnl|bosTau2|chr21 (34386084-34385546)
               

               
               1-545, gnl|Hg17|chr15 (41613854-41613317)
               

               
               1-545, gnl|Mm7|chr2 (121052237-121051763)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               spc (0.226732)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	1-545, gnl\|bosTau2\|chr21 (34386084-34385546)
	1-545, gnl\|Hg17\|chr15 (41613854-41613317)
	1-545, gnl\|Mm7\|chr2 (121052237-121051763)

	spc (0.226732)
	tes (0.207814)
	hea (0.204499)
	aor (0.195274)
	cje (0.165235)
	fco (0.157208)
	spl (0.143184)
	ssp (0.13552)
	pgl (0.118483)
	jej (0.0989218)