Non-Coding RNA Search

Ss1.1-Pig4-TMW8033K06.3

Sequence:


               
               CCTTTCTGCTCCAGGTCAAGGAACCAGCAGCACAAACACTGTTGGAGGAACAGTGAGCAG
CCAGGCTGCCCAGGCTCAGCCTCCTACCATGACGTCTAGCCGGAAGGGCACTTTCACAGA
CGACCTGCACAAGTTGGTGGATAACTGGGCCCGAGACGCCATGAATCTCTCAGGCAGGAG
AGGCAGCAAAGGACACATGAGCTATGAGGGCCCTGGCATGGCGAGGAAGTTCTCCGCACC
TGGTCAGCTGTGCATCTCCATGACCTCAAACCTGGGTGGCTCAGCCCCCATCTCTGCAGC
ATCAGCTACCTCTCTAGGTCACTTCACCAAGTCTATGTGCCCCCCACAGCAGTACGGTTT
CCCAGCCCCCCCCTTTGGCACACAGTGGAGTGGGACAGGTGGCCCAGCACCACAGCCACT
CAGCCAGTTCCAGCCTGTGGGAACTGCCTCCTTACAGAATTTCAACATCAGCAATTTGCA
GAAATCCATCAGCAACCCCCCAGGTTCCAACCTGCGGACCACTTAGACCTAGAGACATTA
CGAAGTAGATTTGGGGGCAGGAGATGGAATGGTGAGGGTGGGTGGGAGGGGGGGTGGGAA
AGTAGCCTATATACTAACTACTAGTGCTGCATTTAACTGGTTATTTCTTGCCAGAAAGGA
ATGTTTTTAATACTGCTTAGAGCCCTCAGAATGGGGAATTTGCCCCTGCCCTCCCCACTT
ACTTACTGGAGCAGGTGAGAAGGAAAGGGCAGCTTTCTTGTGTGTGCTTTGTTGTTCATC
TAGACCCCATAGTGAGCACTTGGAAAGAAAGTCACGTTTATCAGAGAGCTACTAGAGAGC
TCAGTGGGAAAAAAGCAAAGCCCATCTGCATTTGCAGGGAGTGGGGCTCTTAATTTGGTA
CCCATCCCAAACCACTTATTCCCTCAAGAATCAAAACCACAAGACAAAAAAACTATTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTCTGCTCCAGGTCAAGGAACCAGCAGCACAAACACTGTTGGAGGAACAGTGAGCAG
CCAGGCTGCCCAGGCTCAGCCTCCTACCATGACGTCTAGCCGGAAGGGCACTTTCACAGA
CGACCTGCACAAGTTGGTGGATAACTGGGCCCGAGACGCCATGAATCTCTCAGGCAGGAG
AGGCAGCAAAGGACACATGAGCTATGAGGGCCCTGGCATGGCGAGGAAGTTCTCCGCACC
TGGTCAGCTGTGCATCTCCATGACCTCAAACCTGGGTGGCTCAGCCCCCATCTCTGCAGC
ATCAGCTACCTCTCTAGGTCACTTCACCAAGTCTATGTGCCCCCCACAGCAGTACGGTTT
CCCAGCCCCCCCCTTTGGCACACAGTGGAGTGGGACAGGTGGCCCAGCACCACAGCCACT
CAGCCAGTTCCAGCCTGTGGGAACTGCCTCCTTACAGAATTTCAACATCAGCAATTTGCA
GAAATCCATCAGCAACCCCCCAGGTTCCAACCTGCGGACCACTTAGACCTAGAGACATTA
CGAAGTAGATTTGGGGGCAGGAGATGGAATGGTGAGGGTGGGTGGGAGGGGGGGTGGGAA
AGTAGCCTATATACTAACTACTAGTGCTGCATTTAACTGGTTATTTCTTGCCAGAAAGGA
ATGTTTTTAATACTGCTTAGAGCCCTCAGAATGGGGAATTTGCCCCTGCCCTCCCCACTT
ACTTACTGGAGCAGGTGAGAAGGAAAGGGCAGCTTTCTTGTGTGTGCTTTGTTGTTCATC
TAGACCCCATAGTGAGCACTTGGAAAGAAAGTCACGTTTATCAGAGAGCTACTAGAGAGC
TCAGTGGGAAAAAAGCAAAGCCCATCTGCATTTGCAGGGAGTGGGGCTCTTAATTTGGTA
CCCATCCCAAACCACTTATTCCCTCAAGAATCAAAACCACAAGACAAAAAAACTATTGGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q96CZ6_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q96CZ6_HUMAN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               247-366, - strand, RNAz p=0.769938
               

               
               487-601, - strand, RNAz p=0.998605
               

               
               642-761, - strand, RNAz p=0.646492

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               247-366, - strand, RNAz p=0.769938
               

               
               487-601, - strand, RNAz p=0.998605
               

               
               642-761, - strand, RNAz p=0.646492

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               208-951, gnl|bosTau2|chr5 (65122112-65122820)
               

               
               208-951, gnl|Hg17|chr12 (887902-888645)
               

               
               208-951, gnl|Mm7|chr6 (119951988-119951243)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               208-951, gnl|bosTau2|chr5 (65122112-65122820)
               

               
               208-951, gnl|Hg17|chr12 (887902-888645)
               

               
               208-951, gnl|Mm7|chr6 (119951988-119951243)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               cki (0.165235)
               

               
               pla (0.133672)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               pla (0.133672)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	247-366, - strand, RNAz p=0.769938
	487-601, - strand, RNAz p=0.998605
	642-761, - strand, RNAz p=0.646492

	208-951, gnl\|bosTau2\|chr5 (65122112-65122820)
	208-951, gnl\|Hg17\|chr12 (887902-888645)
	208-951, gnl\|Mm7\|chr6 (119951988-119951243)