Ss1.1-Pig4-TMW8033K17.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GTTCTGGTCTAGAAGGGTACGCCGGCCTCGTTTACTTGGGCGGCTGTGCGAGGTTTTTTG GGGTGTGACTGCAAGGAGGAAGGCCCCAGGGACATCCCGCTGTCCCAGCGCCTCGCCCCG CACACAGGGAGTCACCGAGGAGACGCGCCATCGCCCAAGTTGCCTTTCGCTGTCGCAGCC ATGGCCACACGACTCCTCCGTGGATCTCTGCGCTTGTGGGGCGGCCTCTGTGCTCCGCGC CTACCGACGGCCTCGAGATGTTCTCATTCTGGAGGGGAGGAACGTCTAGAAAGTCCTTCT GCTAAAAAATTAACAGATATAGGGATTAGAAGAATCTTCTCTTCAGAGCATGATATTTTC CGGGAAAGTGTAAGGAAGTTTTTTCAAGAAGAAGTGATTCCTCATCACGCAGAATGGGAG AAAGCTGGAGAAGTGAGTAGGGAGCTTTGGGAAAAAGCTGGAAAACAAGGACTGCTTGGT ATCAATATTGCAGAGCGTCATGGTGGCATTGGAGGGGACTTGTACTCGGCAGCTATTGTT TGGGAGGAGCAAGCATATTCGAATTGTACAGGCCCGGGTTTCAGTCTTCATTCAGATATT GTCATGCCCTATATTGCAAACTATGGCTCAGAAGAACAGATTAAACACTTCATCCCCCAG ATGACTGCAGGGAAATGTATTGGTGCCATAGCAATGACAGAGCCTGGAGCTGGAAGTGAT TTGCAAGGAGTAAGAACAAATGCCAAGAAGGATGGAAGTGACTGGATTCTCAATGGAAGC AAGGTATTCATCACTAATGGGTGGCTAAGTGATGTTGTGATTGTAGTGGCTGTTACAAAT CGTGAAGCTCGCTCTCCTGCCCATGGCATTAGCCTTTTTCTGGTGGAAAATGGAATGAAA GGATTTGTTAAGGGGCGAAAGCTACATAAAATAGGACTAAAAGCTCAGGATACTGCAGAG TTATTCTTTGAAGATGTACGGTTGCCAGCGAGTGCCCTACTTGGAGAAGAGAATAAAGGC TTCTATTACCTCATGCAAGAGCTTCCCCAGGAAAGGCTACTGATTGCTGAGTTGGCAGTT TCAGCCAGTGAATTCATGTTTGAAGAAACTAGGAACTACGTTAAACAAAGAAAAGCTTTT GGAAAGACAGTGGCACATATACAGACGGTGCAGCATAAGCTAGCAGAATTAAAAACACAC ATTTGTGTAACCAGAGCTTTTGTGGACAGCTGTCTCCAGCTGCATGAAACGAAACGTCTG GAGTCTGCCGCTGCTTCCATGGCAAAATATTGGGCATCTGAGTTACAAAACAGCGTGGCT TATGACTGTGTGCAGCTGCACGGAGGTTGGGGATACATGTGGGAGTACCCCATTGCCAGA GCTTATGTGGATGCCCGAGTTCAGCCAATCTATGGTGGTACCAATGAAATAATGAAGGAG CTGATTGCAAGAGAGATCGTCCATGACAAGTAGACATCTGCCCACATCCTGGAATCCTAT TACAACTAATCTGGGTTTAGATCTACTTAAGCTAAAATACAACCTGGAAAGGGAGGGAAC ACTAAACATGTTTTTATATGCTCTTGCTATGGAGAAAGAAATCAAATATAGATAAAAGAT GAACACAGTGGAACAAGAAATCTTTGCATCCAAAGATTCTAAAATTTTCTAATATTAAGG TTTAACTTTTAATTTTTTTACATCTAAAAGGCAAAGATTTTCTGATGAAGCCTAGTCCTT CATTTTCCCCTAAAGTTCTAAAAGCATGTAATGCTTAGATCTTTAAAATTGAGACAGAAA TAATTTTGTTCTTATACTGTAACATCATTAATATTTACAACACATTCTCTTTGAAAGGTA AAAATAAATATAATTCATAATGCAAAAAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GTTCTGGTCTAGAAGGGTACGCCGGCCTCGTTTACTTGGGCGGCTGTGCGAGGTTTTTTG GGGTGTGACTGCAAGGAGGAAGGCCCCAGGGACATCCCGCTGTCCCAGCGCCTCGCCCCG CACACAGGGAGTCACCGAGGAGACGCGCCATCGCCCAAGTTGCCTTTCGCTGTCGCAGCC ATGGCCACACGACTCCTCCGTGGATCTCTGCGCTTGTGGGGCGGCCTCTGTGCTCCGCGC CTACCGACGGCCTCGAGATGTTCTCATTCTGGAGGGGAGGAACGTCTAGAAAGTCCTTCT GCTAAAAAATTAACAGATATAGGGATTAGAAGAATCTTCTCTTCAGAGCATGATATTTTC CGGGAAAGTGTAAGGAAGTTTTTTCAAGAAGAAGTGATTCCTCATCACGCAGAATGGGAG AAAGCTGGAGAAGTGAGTAGGGAGCTTTGGGAAAAAGCTGGAAAACAAGGACTGCTTGGT ATCAATATTGCAGAGCGTCATGGTGGCATTGGAGGGGACTTGTACTCGGCAGCTATTGTT TGGGAGGAGCAAGCATATTCGAATTGTACAGGCCCGGGTTTCAGTCTTCATTCAGATATT GTCATGCCCTATATTGCAAACTATGGCTCAGAAGAACAGATTAAACACTTCATCCCCCAG ATGACTGCAGGGAAATGTATTGGTGCCATAGCAATGACAGAGCCTGGAGCTGGAAGTGAT TTGCAAGGAGTAAGAACAAATGCCAAGAAGGATGGAAGTGACTGGATTCTCAATGGAAGC AAGGTATTCATCACTAATGGGTGGCTAAGTGATGTTGTGATTGTAGTGGCTGTTACAAAT CGTGAAGCTCGCTCTCCTGCCCATGGCATTAGCCTTTTTCTGGTGGAAAATGGAATGAAA GGATTTGTTAAGGGGCGAAAGCTACATAAAATAGGACTAAAAGCTCAGGATACTGCAGAG TTATTCTTTGAAGATGTACGGTTGCCAGCGAGTGCCCTACTTGGAGAAGAGAATAAAGGC TTCTATTACCTCATGCAAGAGCTTCCCCAGGAAAGGCTACTGATTGCTGAGTTGGCAGTT TCAGCCAGTGAATTCATGTTTGAAGAAACTAGGAACTACGTTAAACAAAGAAAAGCTTTT GGAAAGACAGTGGCACATATACAGACGGTGCAGCATAAGCTAGCAGAATTAAAAACACAC ATTTGTGTAACCAGAGCTTTTGTGGACAGCTGTCTCCAGCTGCATGAAACGAAACGTCTG GAGTCTGCCGCTGCTTCCATGGCAAAATATTGGGCATCTGAGTTACAAAACAGCGTGGCT TATGACTGTGTGCAGCTGCACGGAGGTTGGGGATACATGTGGGAGTACCCCATTGCCAGA GCTTATGTGGATGCCCGAGTTCAGCCAATCTATGGTGGTACCAATGAAATAATGAAGGAG CTGATTGCAAGAGAGATCGTCCATGACAAGTAGACATCTGCCCACATCCTGGAATCCTAT TACAACTAATCTGGGTTTAGATCTACTTAAGCTAAAATACAACCTGGAAAGGGAGGGAAC ACTAAACATGTTTTTATATGCTCTTGCTATGGAGAAAGAAATCAAATATAGATAAAAGAT GAACACAGTGGAACAAGAAATCTTTGCATCCAAAGATTCTAAAATTTTCTAATATTAAGG TTTAACTTTTAATTTTTTTACATCTAAAAGGCAAAGATTTTCTGATGAAGCCTAGTCCTT CATTTTCCCCTAAAGTTCTAAAAGCATGTAATGCTTAGATCTTTAAAATTGAGACAGAAA TAATTTTGTTCTTATACTGTAACATCATTAATATTTACAACACATTCTCTTTGAAAGGTA AAAATAAATATAATTCATAATGCAAAAAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
1163-1293, + strand, RNAz p=0.86196 | |
1163-1293, + strand, RNAz p=0.948605 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
1163-1293, + strand, RNAz p=0.86196 | |
1163-1293, + strand, RNAz p=0.948605 |
Aligned organism(s): 79 entry(ies) | More info |
Aligned organism(s): 79 entry(ies) | Help | Less info |
108-260, gnl|bosTau2|chr2 (55388377-55388531) | |
108-260, gnl|Hg17|chr2 (210915575-210915414) | |
409-551, gnl|bosTau2|chr2 (55398298-55398439) | |
409-551, gnl|canFam2|chr37 (21064215-21064395) | |
409-551, gnl|danRer3|chrNA (245922633-245922480) | |
409-551, gnl|echTel1|scaffold_27779 (287-107) | |
409-551, gnl|fr1|chrUn (75418897-75418751) | |
409-551, gnl|galGal2|chr7 (2704967-2705146) | |
409-551, gnl|hg17|chr2 (210908162-210908342) | |
409-551, gnl|Hg17|chr2 (210908336-210908195) | |
409-551, gnl|loxAfr1|scaffold_45875 (3374-3190) | |
409-551, gnl|mm7|chr1 (67094299-67094479) | |
409-551, gnl|Mm7|chr1 (67094473-67094332) | |
409-551, gnl|monDom2|scaffold_39 (12599900-12599728) | |
409-551, gnl|oryCun1|scaffold_209589 (17385-17205) | |
409-551, gnl|panTro1|chr13_random (27455140-27455320) | |
409-551, gnl|rheMac2|chr12 (73990121-73990301) | |
409-551, gnl|rn3|chr9 (65790814-65790994) | |
409-551, gnl|tetNig1|chr3 (2048910-2049059) | |
409-551, gnl|xenTro1|scaffold_782 (491249-491090) | |
552-716, gnl|bosTau2|chr2 (55400885-55401049) | |
552-716, gnl|canFam2|chr37 (21062787-21063006) | |
552-716, gnl|danRer3|chrNA (245923619-245923409) | |
552-716, gnl|dasNov1|scaffold_78856 (966-745) | |
552-716, gnl|echTel1|scaffold_27779 (1888-1687) | |
552-716, gnl|fr1|chrUn (75419134-75418954) | |
552-716, gnl|galGal2|chr7 (2704410-2704622) | |
552-716, gnl|hg17|chr2 (210906563-210906781) | |
552-716, gnl|Hg17|chr2 (210906741-210906577) | |
552-716, gnl|loxAfr1|scaffold_45875 (4764-4556) | |
552-716, gnl|mm7|chr1 (67092825-67093038) | |
552-716, gnl|Mm7|chr1 (67092999-67092835) | |
552-716, gnl|monDom2|scaffold_39 (12602695-12602459) | |
552-716, gnl|panTro1|chr13_random (27453551-27453769) | |
552-716, gnl|rheMac2|chr12 (73988558-73988776) | |
552-716, gnl|rn3|chr9 (65789208-65789426) | |
552-716, gnl|tetNig1|chr3 (2048672-2048875) | |
552-716, gnl|xenTro1|scaffold_782 (491941-491731) | |
782-949, gnl|bosTau2|chr2 (55404838-55405005) | |
782-949, gnl|canFam2|chr37 (21052276-21052447) | |
782-949, gnl|danRer3|chrNA (245926560-245926392) | |
782-949, gnl|dasNov1|scaffold_5659 (40887-40715) | |
782-949, gnl|fr1|chrUn (75419546-75419375) | |
782-949, gnl|galGal2|chr7 (2702341-2702513) | |
782-949, gnl|hg17|chr2 (210895860-210896032) | |
782-949, gnl|Hg17|chr2 (210896028-210895861) | |
782-949, gnl|mm7|chr1 (67084874-67085046) | |
782-949, gnl|Mm7|chr1 (67085042-67084875) | |
782-949, gnl|monDom2|scaffold_39 (12611778-12611606) | |
782-949, gnl|oryCun1|scaffold_160768 (1435-1263) | |
782-949, gnl|panTro1|chr13 (100986271-100986443) | |
782-949, gnl|rheMac2|chr12 (73977236-73977408) | |
782-949, gnl|rn3|chr9 (65776272-65776444) | |
782-949, gnl|tetNig1|chr3 (2048272-2048443) | |
782-949, gnl|xenTro1|scaffold_782 (493170-492999) | |
1163-1293, gnl|bosTau2|chr2 (55420269-55420399) | |
1163-1293, gnl|canFam2|chr37 (21039591-21039760) | |
1163-1293, gnl|danRer3|chrNA (245932747-245932606) | |
1163-1293, gnl|echTel1|scaffold_284744 (54751-54582) | |
1163-1293, gnl|fr1|chrUn (75420158-75420007) | |
1163-1293, gnl|galGal2|chr7 (2697591-2697759) | |
1163-1293, gnl|hg17|chr2 (210885412-210885581) | |
1163-1293, gnl|Hg17|chr2 (210885570-210885440) | |
1163-1293, gnl|loxAfr1|scaffold_22293 (18848-18678) | |
1163-1293, gnl|mm7|chr1 (67077958-67078126) | |
1163-1293, gnl|Mm7|chr1 (67078116-67077986) | |
1163-1293, gnl|monDom2|scaffold_39 (12632603-12632434) | |
1163-1293, gnl|oryCun1|scaffold_209589 (51389-51224) | |
1163-1293, gnl|panTro1|chr13 (100975722-100975891) | |
1163-1293, gnl|rheMac2|chr12 (73966125-73966294) | |
1163-1293, gnl|rn3|chr9 (65767105-65767273) | |
1163-1293, gnl|tetNig1|chr3 (2047708-2047839) | |
1163-1293, gnl|xenTro1|scaffold_782 (495758-495602) | |
1376-1614, gnl|bosTau2|chr2 (55427687-55427925) | |
1376-1614, gnl|Hg17|chr2 (210879288-210879050) | |
1376-1614, gnl|Mm7|chr1 (67071239-67070962) | |
1648-1890, gnl|bosTau2|chr2 (55427925-55428165) | |
1648-1890, gnl|Hg17|chr2 (210879050-210878774) | |
1648-1890, gnl|Mm7|chr1 (67070962-67070738) |
Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
108-260, gnl|bosTau2|chr2 (55388377-55388531) | |
108-260, gnl|Hg17|chr2 (210915575-210915414) | |
409-551, gnl|bosTau2|chr2 (55398298-55398439) | |
409-551, gnl|canFam2|chr37 (21064215-21064395) | |
409-551, gnl|danRer3|chrNA (245922633-245922480) | |
409-551, gnl|echTel1|scaffold_27779 (287-107) | |
409-551, gnl|fr1|chrUn (75418897-75418751) | |
409-551, gnl|galGal2|chr7 (2704967-2705146) | |
409-551, gnl|hg17|chr2 (210908162-210908342) | |
409-551, gnl|Hg17|chr2 (210908336-210908195) | |
409-551, gnl|loxAfr1|scaffold_45875 (3374-3190) | |
409-551, gnl|mm7|chr1 (67094299-67094479) | |
409-551, gnl|Mm7|chr1 (67094473-67094332) | |
409-551, gnl|monDom2|scaffold_39 (12599900-12599728) | |
409-551, gnl|oryCun1|scaffold_209589 (17385-17205) | |
409-551, gnl|panTro1|chr13_random (27455140-27455320) | |
409-551, gnl|rheMac2|chr12 (73990121-73990301) | |
409-551, gnl|rn3|chr9 (65790814-65790994) | |
409-551, gnl|tetNig1|chr3 (2048910-2049059) | |
409-551, gnl|xenTro1|scaffold_782 (491249-491090) | |
552-716, gnl|bosTau2|chr2 (55400885-55401049) | |
552-716, gnl|canFam2|chr37 (21062787-21063006) | |
552-716, gnl|danRer3|chrNA (245923619-245923409) | |
552-716, gnl|dasNov1|scaffold_78856 (966-745) | |
552-716, gnl|echTel1|scaffold_27779 (1888-1687) | |
552-716, gnl|fr1|chrUn (75419134-75418954) | |
552-716, gnl|galGal2|chr7 (2704410-2704622) | |
552-716, gnl|hg17|chr2 (210906563-210906781) | |
552-716, gnl|Hg17|chr2 (210906741-210906577) | |
552-716, gnl|loxAfr1|scaffold_45875 (4764-4556) | |
552-716, gnl|mm7|chr1 (67092825-67093038) | |
552-716, gnl|Mm7|chr1 (67092999-67092835) | |
552-716, gnl|monDom2|scaffold_39 (12602695-12602459) | |
552-716, gnl|panTro1|chr13_random (27453551-27453769) | |
552-716, gnl|rheMac2|chr12 (73988558-73988776) | |
552-716, gnl|rn3|chr9 (65789208-65789426) | |
552-716, gnl|tetNig1|chr3 (2048672-2048875) | |
552-716, gnl|xenTro1|scaffold_782 (491941-491731) | |
782-949, gnl|bosTau2|chr2 (55404838-55405005) | |
782-949, gnl|canFam2|chr37 (21052276-21052447) | |
782-949, gnl|danRer3|chrNA (245926560-245926392) | |
782-949, gnl|dasNov1|scaffold_5659 (40887-40715) | |
782-949, gnl|fr1|chrUn (75419546-75419375) | |
782-949, gnl|galGal2|chr7 (2702341-2702513) | |
782-949, gnl|hg17|chr2 (210895860-210896032) | |
782-949, gnl|Hg17|chr2 (210896028-210895861) | |
782-949, gnl|mm7|chr1 (67084874-67085046) | |
782-949, gnl|Mm7|chr1 (67085042-67084875) | |
782-949, gnl|monDom2|scaffold_39 (12611778-12611606) | |
782-949, gnl|oryCun1|scaffold_160768 (1435-1263) | |
782-949, gnl|panTro1|chr13 (100986271-100986443) | |
782-949, gnl|rheMac2|chr12 (73977236-73977408) | |
782-949, gnl|rn3|chr9 (65776272-65776444) | |
782-949, gnl|tetNig1|chr3 (2048272-2048443) | |
782-949, gnl|xenTro1|scaffold_782 (493170-492999) | |
1163-1293, gnl|bosTau2|chr2 (55420269-55420399) | |
1163-1293, gnl|canFam2|chr37 (21039591-21039760) | |
1163-1293, gnl|danRer3|chrNA (245932747-245932606) | |
1163-1293, gnl|echTel1|scaffold_284744 (54751-54582) | |
1163-1293, gnl|fr1|chrUn (75420158-75420007) | |
1163-1293, gnl|galGal2|chr7 (2697591-2697759) | |
1163-1293, gnl|hg17|chr2 (210885412-210885581) | |
1163-1293, gnl|Hg17|chr2 (210885570-210885440) | |
1163-1293, gnl|loxAfr1|scaffold_22293 (18848-18678) | |
1163-1293, gnl|mm7|chr1 (67077958-67078126) | |
1163-1293, gnl|Mm7|chr1 (67078116-67077986) | |
1163-1293, gnl|monDom2|scaffold_39 (12632603-12632434) | |
1163-1293, gnl|oryCun1|scaffold_209589 (51389-51224) | |
1163-1293, gnl|panTro1|chr13 (100975722-100975891) | |
1163-1293, gnl|rheMac2|chr12 (73966125-73966294) | |
1163-1293, gnl|rn3|chr9 (65767105-65767273) | |
1163-1293, gnl|tetNig1|chr3 (2047708-2047839) | |
1163-1293, gnl|xenTro1|scaffold_782 (495758-495602) | |
1376-1614, gnl|bosTau2|chr2 (55427687-55427925) | |
1376-1614, gnl|Hg17|chr2 (210879288-210879050) | |
1376-1614, gnl|Mm7|chr1 (67071239-67070962) | |
1648-1890, gnl|bosTau2|chr2 (55427925-55428165) | |
1648-1890, gnl|Hg17|chr2 (210879050-210878774) | |
1648-1890, gnl|Mm7|chr1 (67070962-67070738) |
Expressed library(ies): 39 entry(ies) | More info |
Expressed library(ies): 39 entry(ies) | Help | Less info |
vin (1.99534) | |
isp (1.95489) | |
kid (1.29735) | |
hea (1.02249) | |
tbr (0.770891) | |
sag (0.730861) | |
sin (0.69979) | |
sme (0.610874) | |
ski (0.586941) | |
ssp (0.542079) | |
mgp (0.461361) | |
sug (0.381874) | |
tra (0.369276) | |
fty (0.351679) | |
spc (0.340097) | |
bfe (0.299715) | |
fat (0.294855) | |
hyp (0.285673) | |
csk (0.281492) | |
ste (0.270416) | |
pan (0.23596) | |
nms (0.213858) | |
mas (0.210305) | |
jej (0.197844) | |
cmu (0.186393) | |
sto (0.179824) | |
ton (0.1755) | |
cki (0.165235) | |
lun (0.150489) | |
lin (0.145603) | |
hlv (0.139256) | |
lyg (0.133103) | |
nmm (0.132802) | |
ova (0.129132) | |
ret (0.128733) | |
bla (0.124347) | |
eru (0.120048) | |
cty (0.10408) | |
nbm (0.0993246) |
Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
vin (1.99534) | |
isp (1.95489) | |
kid (1.29735) | |
hea (1.02249) | |
tbr (0.770891) | |
sag (0.730861) | |
sin (0.69979) | |
sme (0.610874) | |
ski (0.586941) | |
ssp (0.542079) | |
mgp (0.461361) | |
sug (0.381874) | |
tra (0.369276) | |
fty (0.351679) | |
spc (0.340097) | |
bfe (0.299715) | |
fat (0.294855) | |
hyp (0.285673) | |
csk (0.281492) | |
ste (0.270416) | |
pan (0.23596) | |
nms (0.213858) | |
mas (0.210305) | |
jej (0.197844) | |
cmu (0.186393) | |
sto (0.179824) | |
ton (0.1755) | |
cki (0.165235) | |
lun (0.150489) | |
lin (0.145603) | |
hlv (0.139256) | |
lyg (0.133103) | |
nmm (0.132802) | |
ova (0.129132) | |
ret (0.128733) | |
bla (0.124347) | |
eru (0.120048) | |
cty (0.10408) | |
nbm (0.0993246) |