Ss1.1-Pig4-TMW8033K23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCGTTGGGCTGTCACTGGAACCCCCATTCAAAACAACTTGCTGGACATGTATTCCCTG CTGAAGTTTCTCCGTTGTTCTCCATTTGATGAATTCAGTCTCTGGAAGAGTCAAGTTGAC AATGGTTCAAAGAAAGGAGGAGAACGGTTAAATATTTTAACCAAGAGCCTTTTGCTGCGG AGAACCAAAGACCAGCTGGACTCCACCGGCAAACCCTTGGTGGAGCTGCCCCAGCGTCAA TTTCAGTTGCACCGTTTAAAGCTTTCCGAAGATGAAGAGACTGTTTACAATGTTCTTTTT GCAAGATCAAGGTCAGATTTGCAGTCTTATCTAAAAAGACATGAAACTGGGGACAGATCA TCTGCAAGAAGCCCTGATAATCCATTCAATAAAGTGGCACAGGAGTTTGGGTCTGACGGG CCCAGACGCCCTGTGGCGGGAGACCTGCAGGGGTCCAGCACGGTCCACATACTGTCCCAG TTGCTGAGACTCCGCCAGTGCTGCTGTCACCTTTCTCTGCTGAAGTCGGCCCTGGATCCG ACAGAGCTGAAGAGCGAAGGCCTGGTCCTTTCTCTGGAAGAGCAGCTCAGTGCCTTGACC TTGTCCGAACTCCATAGCTCAGAGTCGTCTGCTTCTGTGTCCCTTAATGGCACCTGCTTC AAGGTGGAGCTTTTTGACAGCATGAGGCAAAGCACCAAGATTTCATCGCTGTTGGCAGAA CTGGAGGCAATCCGAAGAAATTCAGGGTCCCAAAAGAGTGTCATCGTCTCCCAGTGGACC AGCATGCTGGAGGTTGTAGCCTTGCACCTCAAGAGACACAGAGTGACTTATGCCACCATC GATGGCTCTGTCAACCCCAAACAGAGAATGGATTTGGTGGAGGCGTTTAACAGCTCCGGG GGCCCTCAGGTCATGCTGATCTCTCTCTTGGCTGGAGGGGTTGGTCTAAACCTGACCGGA GGAAACCATCTTTTTCTTCTGGACATGCACTGGAATCCATCACTTGAAGATCAAGCTTCT GACCGAATTTACCGGGTGGGGCAGCAGAAGGATGTTGTCATACACAGATTTGTTTGTGAA GGCACAGTGGAAGAGAAGATCTTGCAGCTCCAAGAAAAAAAGAAAGATTTGGCCAAACAG ATCCTATCAGGATCTGGAGAATTTGTTACCAAGCTCACCTTGGCAGACCTCAAAATCCTT TTTGGCATCTAACTTCATGTTTCTGGGGCTCAGAATAGTGCTACTGTTGGTTTGTATTAG GGTCTGGGCATAACAACTAAGAAGCTTTGAGCTCTCCTTGGCATTCCACTTCACTGGCAA CTTACCCTGTTAACCAGTTGGACGTCAACTTATTAACGCATCAACTTATTTAATGAGTGA CATAGAAACCAATAAATTACTTCAGATAAAATGCTTTAGGGTTAGATAATTTGGAAAACA ACTCTGGGAGAGTGGTACAGCACAGAGAGCCCTCTGTCGCCTCCCTCTTCCCAGCTGATG CGGGAGCCAGTGTTCCTGCCTTTTTCTAACACAAGCTCCATCCCATCTCCATCTCTCCTG CCAACAAGTCTGCTCCAACCATTGCTACGGGCTGAGCCGAAGTGGATCCCTGTGGCCATT CCTCTGTAGTAGTTTCCGTCTAGGCAGTTCCTCCTCTCAGGCCTAAGGTCAAGGAGGCGC TTGGTACATGATATATAGGTCATTGGTATTTGTATCATCATATCATTTAGAATTTGCTCT CCTGTCATTATATCATCTTGTATCACTATCATATCATGTAACATTTATGTCATATAATTT CCCTTTGGTATCATTTTTATAGTATTTGTATTTTTACAGATTTACAGTTAATCTGTAGCA CTTGGCATCATTACTTCATTTAGTGTTCTTGTATCATTTAGCATTTGTATTGTCATTGGC ATAATCCAGTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCGTTGGGCTGTCACTGGAACCCCCATTCAAAACAACTTGCTGGACATGTATTCCCTG CTGAAGTTTCTCCGTTGTTCTCCATTTGATGAATTCAGTCTCTGGAAGAGTCAAGTTGAC AATGGTTCAAAGAAAGGAGGAGAACGGTTAAATATTTTAACCAAGAGCCTTTTGCTGCGG AGAACCAAAGACCAGCTGGACTCCACCGGCAAACCCTTGGTGGAGCTGCCCCAGCGTCAA TTTCAGTTGCACCGTTTAAAGCTTTCCGAAGATGAAGAGACTGTTTACAATGTTCTTTTT GCAAGATCAAGGTCAGATTTGCAGTCTTATCTAAAAAGACATGAAACTGGGGACAGATCA TCTGCAAGAAGCCCTGATAATCCATTCAATAAAGTGGCACAGGAGTTTGGGTCTGACGGG CCCAGACGCCCTGTGGCGGGAGACCTGCAGGGGTCCAGCACGGTCCACATACTGTCCCAG TTGCTGAGACTCCGCCAGTGCTGCTGTCACCTTTCTCTGCTGAAGTCGGCCCTGGATCCG ACAGAGCTGAAGAGCGAAGGCCTGGTCCTTTCTCTGGAAGAGCAGCTCAGTGCCTTGACC TTGTCCGAACTCCATAGCTCAGAGTCGTCTGCTTCTGTGTCCCTTAATGGCACCTGCTTC AAGGTGGAGCTTTTTGACAGCATGAGGCAAAGCACCAAGATTTCATCGCTGTTGGCAGAA CTGGAGGCAATCCGAAGAAATTCAGGGTCCCAAAAGAGTGTCATCGTCTCCCAGTGGACC AGCATGCTGGAGGTTGTAGCCTTGCACCTCAAGAGACACAGAGTGACTTATGCCACCATC GATGGCTCTGTCAACCCCAAACAGAGAATGGATTTGGTGGAGGCGTTTAACAGCTCCGGG GGCCCTCAGGTCATGCTGATCTCTCTCTTGGCTGGAGGGGTTGGTCTAAACCTGACCGGA GGAAACCATCTTTTTCTTCTGGACATGCACTGGAATCCATCACTTGAAGATCAAGCTTCT GACCGAATTTACCGGGTGGGGCAGCAGAAGGATGTTGTCATACACAGATTTGTTTGTGAA GGCACAGTGGAAGAGAAGATCTTGCAGCTCCAAGAAAAAAAGAAAGATTTGGCCAAACAG ATCCTATCAGGATCTGGAGAATTTGTTACCAAGCTCACCTTGGCAGACCTCAAAATCCTT TTTGGCATCTAACTTCATGTTTCTGGGGCTCAGAATAGTGCTACTGTTGGTTTGTATTAG GGTCTGGGCATAACAACTAAGAAGCTTTGAGCTCTCCTTGGCATTCCACTTCACTGGCAA CTTACCCTGTTAACCAGTTGGACGTCAACTTATTAACGCATCAACTTATTTAATGAGTGA CATAGAAACCAATAAATTACTTCAGATAAAATGCTTTAGGGTTAGATAATTTGGAAAACA ACTCTGGGAGAGTGGTACAGCACAGAGAGCCCTCTGTCGCCTCCCTCTTCCCAGCTGATG CGGGAGCCAGTGTTCCTGCCTTTTTCTAACACAAGCTCCATCCCATCTCCATCTCTCCTG CCAACAAGTCTGCTCCAACCATTGCTACGGGCTGAGCCGAAGTGGATCCCTGTGGCCATT CCTCTGTAGTAGTTTCCGTCTAGGCAGTTCCTCCTCTCAGGCCTAAGGTCAAGGAGGCGC TTGGTACATGATATATAGGTCATTGGTATTTGTATCATCATATCATTTAGAATTTGCTCT CCTGTCATTATATCATCTTGTATCACTATCATATCATGTAACATTTATGTCATATAATTT CCCTTTGGTATCATTTTTATAGTATTTGTATTTTTACAGATTTACAGTTAATCTGTAGCA CTTGGCATCATTACTTCATTTAGTGTTCTTGTATCATTTAGCATTTGTATTGTCATTGGC ATAATCCAGTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 67-221, + strand, RNAz p=0.996414 | |
| 67-221, - strand, RNAz p=0.996414 | |
| 67-183, + strand, RNAz p=0.59167 | |
| 67-183, - strand, RNAz p=0.59167 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 67-221, + strand, RNAz p=0.996414 | |
| 67-221, - strand, RNAz p=0.996414 | |
| 67-183, + strand, RNAz p=0.59167 | |
| 67-183, - strand, RNAz p=0.59167 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 67-221, gnl|bosTau2|chr3 (22217662-22217816) | |
| 67-221, gnl|canFam2|chr17 (57545711-57545873) | |
| 67-221, gnl|danRer3|chrNA (244227909-244227750) | |
| 67-221, gnl|dasNov1|scaffold_1997 (37307-37148) | |
| 67-221, gnl|fr1|chrUn (207267167-207267325) | |
| 67-221, gnl|galGal2|chr1 (78231380-78231539) | |
| 67-221, gnl|hg17|chr1 (117344718-117344877) | |
| 67-221, gnl|Hg17|chr1 (117344720-117344874) | |
| 67-221, gnl|loxAfr1|scaffold_666 (194796-194637) | |
| 67-221, gnl|mm7|chr3 (100745157-100744998) | |
| 67-221, gnl|Mm7|chr3 (100745153-100744999) | |
| 67-221, gnl|monDom2|scaffold_82 (3255503-3255662) | |
| 67-221, gnl|oryCun1|scaffold_178159 (53382-53541) | |
| 67-221, gnl|panTro1|chr1_random (8276562-8276721) | |
| 67-221, gnl|rheMac2|chr1 (120062249-120062408) | |
| 67-221, gnl|rn3|chr2 (195961408-195961249) | |
| 67-221, gnl|tetNig1|chr2 (17754532-17754374) | |
| 67-221, gnl|xenTro1|scaffold_2211 (7583-7742) | |
| 502-699, gnl|bosTau2|chr3 (22222025-22222224) | |
| 502-699, gnl|Hg17|chr1 (117347368-117347565) | |
| 502-699, gnl|Mm7|chr3 (100742412-100742215) | |
| 757-921, gnl|bosTau2|chr3 (22226828-22226993) | |
| 757-921, gnl|canFam2|chr17 (57552692-57552886) | |
| 757-921, gnl|danRer3|chrNA (244222654-244222481) | |
| 757-921, gnl|echTel1|scaffold_313524 (2637-2477) | |
| 757-921, gnl|fr1|chrUn (207268930-207269092) | |
| 757-921, gnl|galGal2|chr1 (78236262-78236455) | |
| 757-921, gnl|hg17|chr1 (117350801-117350995) | |
| 757-921, gnl|Hg17|chr1 (117350811-117350976) | |
| 757-921, gnl|loxAfr1|scaffold_666 (188500-188357) | |
| 757-921, gnl|mm7|chr3 (100739696-100739509) | |
| 757-921, gnl|Mm7|chr3 (100739684-100739524) | |
| 757-921, gnl|monDom2|scaffold_82 (3268787-3268981) | |
| 757-921, gnl|oryCun1|scaffold_203626 (50668-50474) | |
| 757-921, gnl|panTro1|chr1 (117192952-117193146) | |
| 757-921, gnl|rheMac2|chr1 (120068334-120068528) | |
| 757-921, gnl|rn3|chr2 (195956095-195955901) | |
| 757-921, gnl|tetNig1|chr2 (17753123-17752966) | |
| 757-921, gnl|xenTro1|scaffold_5871 (343-511) | |
| 1065-1576, gnl|bosTau2|chr3 (22233878-22234386) | |
| 1065-1576, gnl|Hg17|chr1 (117356041-117356942) | |
| 1672-1932, gnl|bosTau2|chr3 (22235395-22235650) | |
| 1672-1932, gnl|Hg17|chr1 (117357188-117357507) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-221, gnl|bosTau2|chr3 (22217662-22217816) | |
| 67-221, gnl|canFam2|chr17 (57545711-57545873) | |
| 67-221, gnl|danRer3|chrNA (244227909-244227750) | |
| 67-221, gnl|dasNov1|scaffold_1997 (37307-37148) | |
| 67-221, gnl|fr1|chrUn (207267167-207267325) | |
| 67-221, gnl|galGal2|chr1 (78231380-78231539) | |
| 67-221, gnl|hg17|chr1 (117344718-117344877) | |
| 67-221, gnl|Hg17|chr1 (117344720-117344874) | |
| 67-221, gnl|loxAfr1|scaffold_666 (194796-194637) | |
| 67-221, gnl|mm7|chr3 (100745157-100744998) | |
| 67-221, gnl|Mm7|chr3 (100745153-100744999) | |
| 67-221, gnl|monDom2|scaffold_82 (3255503-3255662) | |
| 67-221, gnl|oryCun1|scaffold_178159 (53382-53541) | |
| 67-221, gnl|panTro1|chr1_random (8276562-8276721) | |
| 67-221, gnl|rheMac2|chr1 (120062249-120062408) | |
| 67-221, gnl|rn3|chr2 (195961408-195961249) | |
| 67-221, gnl|tetNig1|chr2 (17754532-17754374) | |
| 67-221, gnl|xenTro1|scaffold_2211 (7583-7742) | |
| 502-699, gnl|bosTau2|chr3 (22222025-22222224) | |
| 502-699, gnl|Hg17|chr1 (117347368-117347565) | |
| 502-699, gnl|Mm7|chr3 (100742412-100742215) | |
| 757-921, gnl|bosTau2|chr3 (22226828-22226993) | |
| 757-921, gnl|canFam2|chr17 (57552692-57552886) | |
| 757-921, gnl|danRer3|chrNA (244222654-244222481) | |
| 757-921, gnl|echTel1|scaffold_313524 (2637-2477) | |
| 757-921, gnl|fr1|chrUn (207268930-207269092) | |
| 757-921, gnl|galGal2|chr1 (78236262-78236455) | |
| 757-921, gnl|hg17|chr1 (117350801-117350995) | |
| 757-921, gnl|Hg17|chr1 (117350811-117350976) | |
| 757-921, gnl|loxAfr1|scaffold_666 (188500-188357) | |
| 757-921, gnl|mm7|chr3 (100739696-100739509) | |
| 757-921, gnl|Mm7|chr3 (100739684-100739524) | |
| 757-921, gnl|monDom2|scaffold_82 (3268787-3268981) | |
| 757-921, gnl|oryCun1|scaffold_203626 (50668-50474) | |
| 757-921, gnl|panTro1|chr1 (117192952-117193146) | |
| 757-921, gnl|rheMac2|chr1 (120068334-120068528) | |
| 757-921, gnl|rn3|chr2 (195956095-195955901) | |
| 757-921, gnl|tetNig1|chr2 (17753123-17752966) | |
| 757-921, gnl|xenTro1|scaffold_5871 (343-511) | |
| 1065-1576, gnl|bosTau2|chr3 (22233878-22234386) | |
| 1065-1576, gnl|Hg17|chr1 (117356041-117356942) | |
| 1672-1932, gnl|bosTau2|chr3 (22235395-22235650) | |
| 1672-1932, gnl|Hg17|chr1 (117357188-117357507) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cbl (0.344392) | |
| csk (0.281492) | |
| ill (0.175593) | |
| spl (0.143184) | |
| eep (0.122564) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.344392) | |
| csk (0.281492) | |
| ill (0.175593) | |
| spl (0.143184) | |
| eep (0.122564) | |
| spc (0.113366) | |
| cty (0.10408) |