Ss1.1-Pig4-TMW8033L01.3.53
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGTGGCCACCCTGACGGCTGCCTGCGCCCAGCACTGCCCCGACGCCATGATCTGCATCA TTTCCAACCCGGTTAACTCCACCATCCCAATCACGGCGGAGGTCTTCAAGAAACACGGCG TGTACAACCCCAATAAAATCTTCGGGGTGACGACCCTGGACATTGTCCGAGCCAACGCTT TTGTTGCAGAGCTGAAGGGTTTGGACCCGGCTCGAGTCAGCGTTCCCGTCATTGGCGGCC ACGCCGGGAAGACCATCATCCCGCTCATCTCTCAGTGCACCCCGAAGGTGGACTTTCCGC AGGACCAGCTCTCCACCCTCACCGGGCGCATCCAGGAGGCCGGCACCGAGGTGGTCAAGG CTAAGGCCGGAGCAGGCTCTGCCACCCTGTCCATGGCATATGCCGGAGCCCGGTTTGTCT TCTCCCTCGTGGATGCAATGAACGGGAAGGAAGGCGTTGTCGAGTGTTCCTTTGTCAAGT CCCAGGAAACGGACTGTCCGTATTTCTCCACGCCATTGCTGCTGGGGAAAAAGGGCATCG AGAAGAATCTAGGCATCGGCAAAATCTCCCCTTTTGAAGAGAAGATGATCGCCGAGGCCA TTCCTGAGCTGAAAGCCTCCATCAAGAAAGGAGAGGAGTTTGTCAAGAACATGAAATGAG CAGGCGGTTGGCGAGCAGTCCGCTTCCTTAACTTATTCGGGCATCATGTCACTGTAAAGC CATTTCAGACCCCTCTGTCTCCTCCCTTTGCTTTGGTGATGAGTGTCCTGTTTACAAAGC ACCCCTTCCAAATCTCGGGGCATCTCTCGGTGCATCCGTAAAGCAGGCTCTGGTCTTGTT TTTGAGAGTCTCCTCCGGTTGAATACTCGGCTTTCTTCCCCAACAGAGCTGACTGCAGAG TGTCCATCGTGATTCGGAACTAGATGTGTTTCCAAAATAGACGGAAGCATGATGGTCTGT CAGTAGCTTCAGATCTCACACCTTTATCAGTAACTGCTTCTCCCACCCTGCCCTCTGCTC CGTCGAGTCCCTCGGGTGTGTGGGCTGAAGGAAGGGCTGGCTGCATCCGAGAGGGTGGCA GCCCGGTGGCCAACGCCAGGCTGCCGTCTTATGTTCCAAGCTTGTTTCTGTGTGTGTTTT CTGGCCAAACAAACAGCACCATTGGCTGGATTTCGTTGTCTAATTCTGATCAAGCCCTGA AATTCAGTGGCAGTGACAATCCACAGCCAGAAGTGGGAGGAAAGCTGGGCAGGGCAGGAC AGCTGCACCAAAACACCAGCTGCCACCGCCGGGCTGAAGACATGGGGAAGGGGTTTCACG GCCTCATCAGTGGCCTGAGGGGACTTCGTTGCATTAGCTGGGCTTACGGTAAATGTGAGG AATTACAGGAGACCTGACTCCCTTAGTGTCAGGTGAAAACAGCTCCATACCTGGGGAAGA ACTTTCTGGCCACGGGTGATGATTGACCTTCCAGTGAAAGCACAGGTGAGGGTGGAGCCC CCCCCAGTGGACAGATACTCATTTATCAACAGCTTTTTTTTTTTTTTTTTCCTTAAAACT GAAATGGATTTTATCGTGTGACATTGTTTTCTTATGCAAATAAATAATGTTCACTGTTTA AAACCTAAAATGTAGCCAAATAATAAAATCAGGAAAATATATGACCAGCATATGGTCCTC TTAATTATGCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGTGGCCACCCTGACGGCTGCCTGCGCCCAGCACTGCCCCGACGCCATGATCTGCATCA TTTCCAACCCGGTTAACTCCACCATCCCAATCACGGCGGAGGTCTTCAAGAAACACGGCG TGTACAACCCCAATAAAATCTTCGGGGTGACGACCCTGGACATTGTCCGAGCCAACGCTT TTGTTGCAGAGCTGAAGGGTTTGGACCCGGCTCGAGTCAGCGTTCCCGTCATTGGCGGCC ACGCCGGGAAGACCATCATCCCGCTCATCTCTCAGTGCACCCCGAAGGTGGACTTTCCGC AGGACCAGCTCTCCACCCTCACCGGGCGCATCCAGGAGGCCGGCACCGAGGTGGTCAAGG CTAAGGCCGGAGCAGGCTCTGCCACCCTGTCCATGGCATATGCCGGAGCCCGGTTTGTCT TCTCCCTCGTGGATGCAATGAACGGGAAGGAAGGCGTTGTCGAGTGTTCCTTTGTCAAGT CCCAGGAAACGGACTGTCCGTATTTCTCCACGCCATTGCTGCTGGGGAAAAAGGGCATCG AGAAGAATCTAGGCATCGGCAAAATCTCCCCTTTTGAAGAGAAGATGATCGCCGAGGCCA TTCCTGAGCTGAAAGCCTCCATCAAGAAAGGAGAGGAGTTTGTCAAGAACATGAAATGAG CAGGCGGTTGGCGAGCAGTCCGCTTCCTTAACTTATTCGGGCATCATGTCACTGTAAAGC CATTTCAGACCCCTCTGTCTCCTCCCTTTGCTTTGGTGATGAGTGTCCTGTTTACAAAGC ACCCCTTCCAAATCTCGGGGCATCTCTCGGTGCATCCGTAAAGCAGGCTCTGGTCTTGTT TTTGAGAGTCTCCTCCGGTTGAATACTCGGCTTTCTTCCCCAACAGAGCTGACTGCAGAG TGTCCATCGTGATTCGGAACTAGATGTGTTTCCAAAATAGACGGAAGCATGATGGTCTGT CAGTAGCTTCAGATCTCACACCTTTATCAGTAACTGCTTCTCCCACCCTGCCCTCTGCTC CGTCGAGTCCCTCGGGTGTGTGGGCTGAAGGAAGGGCTGGCTGCATCCGAGAGGGTGGCA GCCCGGTGGCCAACGCCAGGCTGCCGTCTTATGTTCCAAGCTTGTTTCTGTGTGTGTTTT CTGGCCAAACAAACAGCACCATTGGCTGGATTTCGTTGTCTAATTCTGATCAAGCCCTGA AATTCAGTGGCAGTGACAATCCACAGCCAGAAGTGGGAGGAAAGCTGGGCAGGGCAGGAC AGCTGCACCAAAACACCAGCTGCCACCGCCGGGCTGAAGACATGGGGAAGGGGTTTCACG GCCTCATCAGTGGCCTGAGGGGACTTCGTTGCATTAGCTGGGCTTACGGTAAATGTGAGG AATTACAGGAGACCTGACTCCCTTAGTGTCAGGTGAAAACAGCTCCATACCTGGGGAAGA ACTTTCTGGCCACGGGTGATGATTGACCTTCCAGTGAAAGCACAGGTGAGGGTGGAGCCC CCCCCAGTGGACAGATACTCATTTATCAACAGCTTTTTTTTTTTTTTTTTCCTTAAAACT GAAATGGATTTTATCGTGTGACATTGTTTTCTTATGCAAATAAATAATGTTCACTGTTTA AAACCTAAAATGTAGCCAAATAATAAAATCAGGAAAATATATGACCAGCATATGGTCCTC TTAATTATGCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 527-645, - strand, RNAz p=0.734251 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 527-645, - strand, RNAz p=0.734251 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 71-198, gnl|bosTau2|chr25 (30844939-30845066) | |
| 71-198, gnl|canFam2|chr6 (10399499-10399650) | |
| 71-198, gnl|danRer3|chr10 (29054633-29054493) | |
| 71-198, gnl|dasNov1|scaffold_111631 (2416-2263) | |
| 71-198, gnl|echTel1|scaffold_183757 (4642-4766) | |
| 71-198, gnl|fr1|chrUn (55594135-55594008) | |
| 71-198, gnl|galGal2|chr19 (4017291-4017140) | |
| 71-198, gnl|hg17|chr7 (75334333-75334485) | |
| 71-198, gnl|Hg17|chr7 (75334341-75334468) | |
| 71-198, gnl|loxAfr1|scaffold_173062 (4695-4817) | |
| 71-198, gnl|mm7|chr5 (134757505-134757660) | |
| 71-198, gnl|Mm7|chr5 (134757512-134757639) | |
| 71-198, gnl|monDom2|scaffold_77 (5066284-5066132) | |
| 71-198, gnl|oryCun1|scaffold_170234 (4513-4365) | |
| 71-198, gnl|panTro1|chr6 (76431452-76431604) | |
| 71-198, gnl|rheMac2|chr3 (50209016-50208864) | |
| 71-198, gnl|rn3|chr12 (22012977-22012825) | |
| 71-198, gnl|tetNig1|chr8 (3396342-3396219) | |
| 71-198, gnl|xenTro1|scaffold_38 (690181-690051) | |
| 273-376, gnl|bosTau2|chr25 (30848264-30848367) | |
| 273-376, gnl|canFam2|chr6 (10403731-10403842) | |
| 273-376, gnl|danRer3|chr10 (29052705-29052594) | |
| 273-376, gnl|dasNov1|scaffold_38057 (35954-36066) | |
| 273-376, gnl|echTel1|scaffold_183757 (4844-4944) | |
| 273-376, gnl|fr1|chrUn (55593933-55593832) | |
| 273-376, gnl|galGal2|chr19 (4015276-4015177) | |
| 273-376, gnl|hg17|chr7 (75338306-75338417) | |
| 273-376, gnl|Hg17|chr7 (75338305-75338408) | |
| 273-376, gnl|loxAfr1|scaffold_54734 (4115-4226) | |
| 273-376, gnl|mm7|chr5 (134760479-134760590) | |
| 273-376, gnl|Mm7|chr5 (134760478-134760581) | |
| 273-376, gnl|monDom2|scaffold_77 (5064218-5064107) | |
| 273-376, gnl|oryCun1|scaffold_170234 (3108-2999) | |
| 273-376, gnl|panTro1|chr6 (76435420-76435531) | |
| 273-376, gnl|rheMac2|chr3 (50205070-50204959) | |
| 273-376, gnl|rn3|chr12 (22009754-22009642) | |
| 273-376, gnl|tetNig1|chr8 (3396141-3396040) | |
| 273-376, gnl|xenTro1|scaffold_38 (688016-687912) | |
| 527-1404, gnl|bosTau2|chr25 (30850055-30850938) | |
| 527-1404, gnl|Hg17|chr7 (75340247-75341171) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-198, gnl|bosTau2|chr25 (30844939-30845066) | |
| 71-198, gnl|canFam2|chr6 (10399499-10399650) | |
| 71-198, gnl|danRer3|chr10 (29054633-29054493) | |
| 71-198, gnl|dasNov1|scaffold_111631 (2416-2263) | |
| 71-198, gnl|echTel1|scaffold_183757 (4642-4766) | |
| 71-198, gnl|fr1|chrUn (55594135-55594008) | |
| 71-198, gnl|galGal2|chr19 (4017291-4017140) | |
| 71-198, gnl|hg17|chr7 (75334333-75334485) | |
| 71-198, gnl|Hg17|chr7 (75334341-75334468) | |
| 71-198, gnl|loxAfr1|scaffold_173062 (4695-4817) | |
| 71-198, gnl|mm7|chr5 (134757505-134757660) | |
| 71-198, gnl|Mm7|chr5 (134757512-134757639) | |
| 71-198, gnl|monDom2|scaffold_77 (5066284-5066132) | |
| 71-198, gnl|oryCun1|scaffold_170234 (4513-4365) | |
| 71-198, gnl|panTro1|chr6 (76431452-76431604) | |
| 71-198, gnl|rheMac2|chr3 (50209016-50208864) | |
| 71-198, gnl|rn3|chr12 (22012977-22012825) | |
| 71-198, gnl|tetNig1|chr8 (3396342-3396219) | |
| 71-198, gnl|xenTro1|scaffold_38 (690181-690051) | |
| 273-376, gnl|bosTau2|chr25 (30848264-30848367) | |
| 273-376, gnl|canFam2|chr6 (10403731-10403842) | |
| 273-376, gnl|danRer3|chr10 (29052705-29052594) | |
| 273-376, gnl|dasNov1|scaffold_38057 (35954-36066) | |
| 273-376, gnl|echTel1|scaffold_183757 (4844-4944) | |
| 273-376, gnl|fr1|chrUn (55593933-55593832) | |
| 273-376, gnl|galGal2|chr19 (4015276-4015177) | |
| 273-376, gnl|hg17|chr7 (75338306-75338417) | |
| 273-376, gnl|Hg17|chr7 (75338305-75338408) | |
| 273-376, gnl|loxAfr1|scaffold_54734 (4115-4226) | |
| 273-376, gnl|mm7|chr5 (134760479-134760590) | |
| 273-376, gnl|Mm7|chr5 (134760478-134760581) | |
| 273-376, gnl|monDom2|scaffold_77 (5064218-5064107) | |
| 273-376, gnl|oryCun1|scaffold_170234 (3108-2999) | |
| 273-376, gnl|panTro1|chr6 (76435420-76435531) | |
| 273-376, gnl|rheMac2|chr3 (50205070-50204959) | |
| 273-376, gnl|rn3|chr12 (22009754-22009642) | |
| 273-376, gnl|tetNig1|chr8 (3396141-3396040) | |
| 273-376, gnl|xenTro1|scaffold_38 (688016-687912) | |
| 527-1404, gnl|bosTau2|chr25 (30850055-30850938) | |
| 527-1404, gnl|Hg17|chr7 (75340247-75341171) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| nms (1.49701) | |
| hlv (0.696282) | |
| mas (0.630915) | |
| ton (0.351) | |
| jca (0.34188) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| col (0.195008) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| sug (0.127291) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (1.49701) | |
| hlv (0.696282) | |
| mas (0.630915) | |
| ton (0.351) | |
| jca (0.34188) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| col (0.195008) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| sug (0.127291) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |