Non-Coding RNA Search

Ss1.1-Pig4-TMW8033L02.5

Sequence:


               
               GTCTTCTGGCAGGTAGGGGCAGAGCCAGGATCAAGCCCAATGCTCCACCCCAACCCTAAG
GCCAGGATTTGCTCGGATCTCACTGGGCTGGTTTGTTCTCCTACTAATTGGTTGTAGCAG
ATGCCACACACAGCCTTTCCTGAGGCCATAGGTGGGCTTCCTGCAGCCAAGGTTTGTGTG
GGTCCTTGTCTAGAAGGATGCCACTCAAACTGTGGACCTTACACTGTCACAGGTTCCCAG
GTCCCACCCAGACCTCTGAAGTGGGTATTGTATTTCTGCTTTGACATGCCTCCCACGTGT
TCCGATGCGCACTACAGTTGGACAACCACTACTGTAGAAAACTTACTTTCGACTGGCATT
TCTCAAACCATGTTCCATAGGAAACAAGTGTCCTGGGATCCAGTGGTGGTTCCGCGTGTT
CCCTGGCAAGGTCCAGTGAGTTTGGGAAAAGCCGCATCTATACACCCCTCTTGAAGCAGC
AGAATATATGTTAGTGGAACCTGTTTATTTAACCCAGCATGTCTCAGACAGATTATGGAG
TTGTTTTTTTTTTGTTTGTTTGTTTTTGGTTTTTTTTTTTGGCAAGTAAACTTGCCAGGA
TTTCCAAGGAAACACCCTTCCAGGCTGAGGTGACCTTAGGACAGCTCAGCTCGAGTATAC
CCTTCACTCTGCCAGAAATGAGGATGAATGGCTATCTGTGGTTTGTTAGTTCTGAACCTT
TAGAGTTCAGGTCTGTCTTGGACCTTTGATGAAGCTTTAAGGTGACACCATCAGCCAACC
AAGTGGATGTCAACCTCGCTGAAACGCACATTATGTGGACTAAGTGCTTTTAATTCTAGA
ATTAGAATGGGAATTACTGTATCTTCGTAAATGTGATTGGTTTCAGAATAGCATTACACT
TAATAAATGTTAAGGGAATGTGTGAATGTCGCTTATGCATTCATGGATGTTTCAGTCACT
TTGAGATTTTTTGACTTTTTTAATTTTCCAGCTTGGGTCTTTTTTTCCTTCTACACCTAA
AATGATTATAGACAAGATTTCGTGGGAATTTGAAACTCCTACATGCAGAAGTAACTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTCTGGCAGGTAGGGGCAGAGCCAGGATCAAGCCCAATGCTCCACCCCAACCCTAAG
GCCAGGATTTGCTCGGATCTCACTGGGCTGGTTTGTTCTCCTACTAATTGGTTGTAGCAG
ATGCCACACACAGCCTTTCCTGAGGCCATAGGTGGGCTTCCTGCAGCCAAGGTTTGTGTG
GGTCCTTGTCTAGAAGGATGCCACTCAAACTGTGGACCTTACACTGTCACAGGTTCCCAG
GTCCCACCCAGACCTCTGAAGTGGGTATTGTATTTCTGCTTTGACATGCCTCCCACGTGT
TCCGATGCGCACTACAGTTGGACAACCACTACTGTAGAAAACTTACTTTCGACTGGCATT
TCTCAAACCATGTTCCATAGGAAACAAGTGTCCTGGGATCCAGTGGTGGTTCCGCGTGTT
CCCTGGCAAGGTCCAGTGAGTTTGGGAAAAGCCGCATCTATACACCCCTCTTGAAGCAGC
AGAATATATGTTAGTGGAACCTGTTTATTTAACCCAGCATGTCTCAGACAGATTATGGAG
TTGTTTTTTTTTTGTTTGTTTGTTTTTGGTTTTTTTTTTTGGCAAGTAAACTTGCCAGGA
TTTCCAAGGAAACACCCTTCCAGGCTGAGGTGACCTTAGGACAGCTCAGCTCGAGTATAC
CCTTCACTCTGCCAGAAATGAGGATGAATGGCTATCTGTGGTTTGTTAGTTCTGAACCTT
TAGAGTTCAGGTCTGTCTTGGACCTTTGATGAAGCTTTAAGGTGACACCATCAGCCAACC
AAGTGGATGTCAACCTCGCTGAAACGCACATTATGTGGACTAAGTGCTTTTAATTCTAGA
ATTAGAATGGGAATTACTGTATCTTCGTAAATGTGATTGGTTTCAGAATAGCATTACACT
TAATAAATGTTAAGGGAATGTGTGAATGTCGCTTATGCATTCATGGATGTTTCAGTCACT
TTGAGATTTTTTGACTTTTTTAATTTTCCAGCTTGGGTCTTTTTTTCCTTCTACACCTAA
AATGATTATAGACAAGATTTCGTGGGAATTTGAAACTCCTACATGCAGAAGTAACTGAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               339-452, - strand, RNAz p=0.943486
               

               
               567-683, + strand, RNAz p=0.997975

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-452, - strand, RNAz p=0.943486
               

               
               567-683, + strand, RNAz p=0.997975

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015141, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015141, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               71-222, gnl|bosTau2|chr22 (10653917-10654064)
               

               
               71-222, gnl|Hg17|chr3 (32183281-32183466)
               

               
               71-222, gnl|Mm7|chr9 (114552664-114552501)
               


               
               228-553, gnl|bosTau2|chr22 (10654096-10654429)
               

               
               228-553, gnl|canFam2|chr23 (15611637-15611176)
               

               
               228-553, gnl|echTel1|scaffold_36344 (1791-2251)
               

               
               228-553, gnl|hg17|chr3 (32183510-32183944)
               

               
               228-553, gnl|Hg17|chr3 (32183516-32183822)
               

               
               228-553, gnl|loxAfr1|scaffold_20544 (55709-56128)
               

               
               228-553, gnl|mm7|chr9 (114552472-114552056)
               

               
               228-553, gnl|Mm7|chr9 (114552459-114552151)
               

               
               228-553, gnl|oryCun1|scaffold_179589 (11695-12041)
               

               
               228-553, gnl|panTro1|chr2 (33172796-33173230)
               

               
               228-553, gnl|rheMac2|chr2 (174641685-174642122)
               

               
               228-553, gnl|rn3|chr8 (119336238-119335822)
               


               
               567-1040, gnl|bosTau2|chr22 (10654418-10654904)
               

               
               567-1040, gnl|Hg17|chr3 (32183816-32184288)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-222, gnl|bosTau2|chr22 (10653917-10654064)
               

               
               71-222, gnl|Hg17|chr3 (32183281-32183466)
               

               
               71-222, gnl|Mm7|chr9 (114552664-114552501)
               


               
               228-553, gnl|bosTau2|chr22 (10654096-10654429)
               

               
               228-553, gnl|canFam2|chr23 (15611637-15611176)
               

               
               228-553, gnl|echTel1|scaffold_36344 (1791-2251)
               

               
               228-553, gnl|hg17|chr3 (32183510-32183944)
               

               
               228-553, gnl|Hg17|chr3 (32183516-32183822)
               

               
               228-553, gnl|loxAfr1|scaffold_20544 (55709-56128)
               

               
               228-553, gnl|mm7|chr9 (114552472-114552056)
               

               
               228-553, gnl|Mm7|chr9 (114552459-114552151)
               

               
               228-553, gnl|oryCun1|scaffold_179589 (11695-12041)
               

               
               228-553, gnl|panTro1|chr2 (33172796-33173230)
               

               
               228-553, gnl|rheMac2|chr2 (174641685-174642122)
               

               
               228-553, gnl|rn3|chr8 (119336238-119335822)
               


               
               567-1040, gnl|bosTau2|chr22 (10654418-10654904)
               

               
               567-1040, gnl|Hg17|chr3 (32183816-32184288)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               hea (0.204499)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               cbl (0.114797)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               cbl (0.114797)

	339-452, - strand, RNAz p=0.943486
	567-683, + strand, RNAz p=0.997975

	71-222, gnl\|bosTau2\|chr22 (10653917-10654064)
	71-222, gnl\|Hg17\|chr3 (32183281-32183466)
	71-222, gnl\|Mm7\|chr9 (114552664-114552501)

	228-553, gnl\|bosTau2\|chr22 (10654096-10654429)
	228-553, gnl\|canFam2\|chr23 (15611637-15611176)
	228-553, gnl\|echTel1\|scaffold_36344 (1791-2251)
	228-553, gnl\|hg17\|chr3 (32183510-32183944)
	228-553, gnl\|Hg17\|chr3 (32183516-32183822)
	228-553, gnl\|loxAfr1\|scaffold_20544 (55709-56128)
	228-553, gnl\|mm7\|chr9 (114552472-114552056)
	228-553, gnl\|Mm7\|chr9 (114552459-114552151)
	228-553, gnl\|oryCun1\|scaffold_179589 (11695-12041)
	228-553, gnl\|panTro1\|chr2 (33172796-33173230)
	228-553, gnl\|rheMac2\|chr2 (174641685-174642122)
	228-553, gnl\|rn3\|chr8 (119336238-119335822)

	567-1040, gnl\|bosTau2\|chr22 (10654418-10654904)
	567-1040, gnl\|Hg17\|chr3 (32183816-32184288)

	hea (0.204499)
	ill (0.175593)
	fbs (0.175346)
	mcp (0.170648)
	cag (0.151194)
	lnt (0.142308)
	kid (0.129735)
	cbl (0.114797)