Non-Coding RNA Search

Ss1.1-Pig4-TMW8033L07.3

Sequence:


               
               TGACTGGGGCCCTTTGAAGAGTCAGAAAGGCGGAGGAGGCGTTCAGAGCCCCCGTTACCT
CCTTGCATTTCCTCCTCTGGGGTTAAAGTTCCCTGTATGGGGAACTGACCAGGAGGTCAC
GTACTCCTTCTCCTGGCTGAGATGGGCCGCACTGGCCTGAGGTCGGCCGTCGGTTGTGCC
TCACCTCCAGGACAGGTTGCGCAGCCTGAAACCTTGACTCCGTTGTTCCCATGTGCTTCC
TTCTCTTGGAGGAGCCCGCGTGCCTTCTGCCTGCTGCTGACACTGAACGTGTTGGGGAGA
GTTGGAGCGGCTCTCTGTGTGGAGTTTTGTAAATACTATGGGTATCTTGACTGGGGGAGT
AGATTGATTTACTACCTGTGAAATGGGAGTTAAAAAAAAATCCAAAGACTCTGTAATAAA
TTGTAAAGATTTAATGATTTGTATTGTATAATGAACTAAACCTCTGTAATTTTGTACCAT
ATATGCCTTTCCATGTATGACCAGCAGCCTCTAAATAAAACCATATGATTTCCTGCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACTGGGGCCCTTTGAAGAGTCAGAAAGGCGGAGGAGGCGTTCAGAGCCCCCGTTACCT
CCTTGCATTTCCTCCTCTGGGGTTAAAGTTCCCTGTATGGGGAACTGACCAGGAGGTCAC
GTACTCCTTCTCCTGGCTGAGATGGGCCGCACTGGCCTGAGGTCGGCCGTCGGTTGTGCC
TCACCTCCAGGACAGGTTGCGCAGCCTGAAACCTTGACTCCGTTGTTCCCATGTGCTTCC
TTCTCTTGGAGGAGCCCGCGTGCCTTCTGCCTGCTGCTGACACTGAACGTGTTGGGGAGA
GTTGGAGCGGCTCTCTGTGTGGAGTTTTGTAAATACTATGGGTATCTTGACTGGGGGAGT
AGATTGATTTACTACCTGTGAAATGGGAGTTAAAAAAAAATCCAAAGACTCTGTAATAAA
TTGTAAAGATTTAATGATTTGTATTGTATAATGAACTAAACCTCTGTAATTTTGTACCAT
ATATGCCTTTCCATGTATGACCAGCAGCCTCTAAATAAAACCATATGATTTCCTGCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               385-495, - strand, RNAz p=0.835238

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-495, - strand, RNAz p=0.835238

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015254, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015254, -

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               169-536, gnl|bosTau2|chr18 (6152063-6151687)
               

               
               169-536, gnl|canFam2|chr25 (31475631-31475175)
               

               
               169-536, gnl|echTel1|scaffold_311739 (8813-9193)
               

               
               169-536, gnl|hg17|chr8 (28980606-28981034)
               

               
               169-536, gnl|loxAfr1|scaffold_17102 (23100-22687)
               

               
               169-536, gnl|mm7|chr14 (59671015-59670660)
               

               
               169-536, gnl|monDom2|scaffold_1 (69251297-69251741)
               

               
               169-536, gnl|oryCun1|scaffold_167532 (23095-22692)
               

               
               169-536, gnl|panTro1|chr7 (30040858-30041286)
               

               
               169-536, gnl|rheMac2|chr8 (29225981-29226407)
               

               
               169-536, gnl|rn3|chr15 (44186169-44185798)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               169-536, gnl|bosTau2|chr18 (6152063-6151687)
               

               
               169-536, gnl|canFam2|chr25 (31475631-31475175)
               

               
               169-536, gnl|echTel1|scaffold_311739 (8813-9193)
               

               
               169-536, gnl|hg17|chr8 (28980606-28981034)
               

               
               169-536, gnl|loxAfr1|scaffold_17102 (23100-22687)
               

               
               169-536, gnl|mm7|chr14 (59671015-59670660)
               

               
               169-536, gnl|monDom2|scaffold_1 (69251297-69251741)
               

               
               169-536, gnl|oryCun1|scaffold_167532 (23095-22692)
               

               
               169-536, gnl|panTro1|chr7 (30040858-30041286)
               

               
               169-536, gnl|rheMac2|chr8 (29225981-29226407)
               

               
               169-536, gnl|rn3|chr15 (44186169-44185798)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cst (0.420109)
               

               
               amn (0.417711)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               cje (0.330469)
               

               
               cte (0.29274)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               che (0.136314)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               cje (0.330469)
               

               
               cte (0.29274)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               che (0.136314)

	169-536, gnl\|bosTau2\|chr18 (6152063-6151687)
	169-536, gnl\|canFam2\|chr25 (31475631-31475175)
	169-536, gnl\|echTel1\|scaffold_311739 (8813-9193)
	169-536, gnl\|hg17\|chr8 (28980606-28981034)
	169-536, gnl\|loxAfr1\|scaffold_17102 (23100-22687)
	169-536, gnl\|mm7\|chr14 (59671015-59670660)
	169-536, gnl\|monDom2\|scaffold_1 (69251297-69251741)
	169-536, gnl\|oryCun1\|scaffold_167532 (23095-22692)
	169-536, gnl\|panTro1\|chr7 (30040858-30041286)
	169-536, gnl\|rheMac2\|chr8 (29225981-29226407)
	169-536, gnl\|rn3\|chr15 (44186169-44185798)

	cst (0.420109)
	amn (0.417711)
	cmu (0.372787)
	sto (0.359648)
	cje (0.330469)
	cte (0.29274)
	fbs (0.175346)
	rec (0.17307)
	cut (0.169924)
	cki (0.165235)
	che (0.136314)