Ss1.1-Pig4-TMW8033L16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGAGGCTGGAGCTTTGATGCTGGCTGATAATGGTGTATGTTGTATTGACGAATTTGAT AAGATGGATGTGCGGGATCAAGTTGCTATTCATGAAGCTATGGAACAACAGACCATCTCC ATCACTAAAGCAGGAGTGAAGGCTACTCTGAATGCCAGGACGTCCATTTTGGCAGCAGCA AACCCGATCAGTGGACACTATGACAGATCAAAGTCATTGAAACAGAATATAAATTTGTCA GCTCCTATCATGTCCCGATTTGATCTCTTCTTTATACTTGTGGATGAATGTAATGAGGTC ACAGATTATGCCATTGCCAGGCGAATAGTAGACTTGCATTCAAGAATTGAGGATTCAATT GATCGTGTCTATTCCCTTGATGATATCAGGAGGTATCTTCTTTTTGCAAGACAGTTTAAA CCCAAGATTTCTAAAGAGTCAGAGGACTTCATAGTGGAACAGTATAAACGCCTTCGCCAG AGGGATGGTTCTGGAGTAACCAAGTCTTCATGGAGGATTACAGTGCGACAGCTCGAGAGC ATGATCCGTCTTTCTGAAGCAATGGCTCGGATGCACTGCTGTGATGAGGTCCAGCCTAAA CATGTGAAGGAAGCTTTCAGGTTACTGAATAAATCAATCATCCGTGTAGAAACACCTGAT GTCAATCTGGATCAAGAAGAAGATGCCCAGATGGAGGTAGATGAGAGTCCAGATGGCATC AATGGTCATGCTGATAGCCCTGCTCCTGTAAATGGAATCAACGGCCATAGTGAAGACATG AATCAAGATTCAGTTCCGAAAGCCTCCTTAAAGCTGGGCTTCTCTGAATACTGCCGAATC TCTAATCTTATTGTGCTTCACCTCAGAAAGATGGAAGAAGAAGAGGATGAGTCAGCATTA AAGAGGAGTGAGCTTGTTAACTGGTACCTGAAGGAAATTGAATCAGAAATTGATTCTGAA GAAGAACTGATAAATAAAAAGAGAATCATAGAGAAAGTCATTTATCGACTCACCCACTAC GATCATGTTCTAATTGAGCTCACCCAAGCTGGATTGAAAGGCTCCACAGAAGGAAGTGAG AGCTATGAAGAAGACCCCTACTTGGTCGTTAACCCTAACTACTTGCTTGAAGATTGAGCT ATTGAAGGTAACCAGAGAAAATGGGGTCCTCTACCTATAGCCTGGAGTCTGGATGGAGTT CTGCTGGCCAGAGAAATGCTTCTGGGAGTGATGCTTCAAGAAGATACACTTTGAGGAAGA AAAACCAACTTGATGGTCTTGTGTGTCTCATTTTTGTCATATACTTTTATACCAGCACAG TTTTTATCCTTTTGTTTAGTGTGCTTCTTGTCTGAATGAAGTTTGATGACAATTATGTGT TGTTCTTATAACTAAGACCTTTGTTTTCATGTGTAGGAAAAGGTTCATTGCTTTTACAGT GTGTGTTATCTTATTGGGGAAATAACTTTTTAAAATTGCCAACCCCTGCTTTTTTCCACC AAAGTGACTTTTTTCTGCTGTTGTCTATTGGATATATTTCTAGTCTACTAAAATTAATGC TTCCATTTATTCATGAAAATGAGTCTTTCCCTTTTTGCTTGATATGGGGCAAGAGGGTAG AAACACAGCATTATAGTAAACATGTAGGAATAGGTTCCTGTGAAGAGAAGTCCTTATTAA AATTTGTTAATATGAATGTAAAACGTGTTGGAGATGACTTTTCGAGGTTAATTCCAATTC TCTTTGTTTTATTTTGATTTAAGATAGTTTGTGAAAATAAAAGGTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGAGGCTGGAGCTTTGATGCTGGCTGATAATGGTGTATGTTGTATTGACGAATTTGAT AAGATGGATGTGCGGGATCAAGTTGCTATTCATGAAGCTATGGAACAACAGACCATCTCC ATCACTAAAGCAGGAGTGAAGGCTACTCTGAATGCCAGGACGTCCATTTTGGCAGCAGCA AACCCGATCAGTGGACACTATGACAGATCAAAGTCATTGAAACAGAATATAAATTTGTCA GCTCCTATCATGTCCCGATTTGATCTCTTCTTTATACTTGTGGATGAATGTAATGAGGTC ACAGATTATGCCATTGCCAGGCGAATAGTAGACTTGCATTCAAGAATTGAGGATTCAATT GATCGTGTCTATTCCCTTGATGATATCAGGAGGTATCTTCTTTTTGCAAGACAGTTTAAA CCCAAGATTTCTAAAGAGTCAGAGGACTTCATAGTGGAACAGTATAAACGCCTTCGCCAG AGGGATGGTTCTGGAGTAACCAAGTCTTCATGGAGGATTACAGTGCGACAGCTCGAGAGC ATGATCCGTCTTTCTGAAGCAATGGCTCGGATGCACTGCTGTGATGAGGTCCAGCCTAAA CATGTGAAGGAAGCTTTCAGGTTACTGAATAAATCAATCATCCGTGTAGAAACACCTGAT GTCAATCTGGATCAAGAAGAAGATGCCCAGATGGAGGTAGATGAGAGTCCAGATGGCATC AATGGTCATGCTGATAGCCCTGCTCCTGTAAATGGAATCAACGGCCATAGTGAAGACATG AATCAAGATTCAGTTCCGAAAGCCTCCTTAAAGCTGGGCTTCTCTGAATACTGCCGAATC TCTAATCTTATTGTGCTTCACCTCAGAAAGATGGAAGAAGAAGAGGATGAGTCAGCATTA AAGAGGAGTGAGCTTGTTAACTGGTACCTGAAGGAAATTGAATCAGAAATTGATTCTGAA GAAGAACTGATAAATAAAAAGAGAATCATAGAGAAAGTCATTTATCGACTCACCCACTAC GATCATGTTCTAATTGAGCTCACCCAAGCTGGATTGAAAGGCTCCACAGAAGGAAGTGAG AGCTATGAAGAAGACCCCTACTTGGTCGTTAACCCTAACTACTTGCTTGAAGATTGAGCT ATTGAAGGTAACCAGAGAAAATGGGGTCCTCTACCTATAGCCTGGAGTCTGGATGGAGTT CTGCTGGCCAGAGAAATGCTTCTGGGAGTGATGCTTCAAGAAGATACACTTTGAGGAAGA AAAACCAACTTGATGGTCTTGTGTGTCTCATTTTTGTCATATACTTTTATACCAGCACAG TTTTTATCCTTTTGTTTAGTGTGCTTCTTGTCTGAATGAAGTTTGATGACAATTATGTGT TGTTCTTATAACTAAGACCTTTGTTTTCATGTGTAGGAAAAGGTTCATTGCTTTTACAGT GTGTGTTATCTTATTGGGGAAATAACTTTTTAAAATTGCCAACCCCTGCTTTTTTCCACC AAAGTGACTTTTTTCTGCTGTTGTCTATTGGATATATTTCTAGTCTACTAAAATTAATGC TTCCATTTATTCATGAAAATGAGTCTTTCCCTTTTTGCTTGATATGGGGCAAGAGGGTAG AAACACAGCATTATAGTAAACATGTAGGAATAGGTTCCTGTGAAGAGAAGTCCTTATTAA AATTTGTTAATATGAATGTAAAACGTGTTGGAGATGACTTTTCGAGGTTAATTCCAATTC TCTTTGTTTTATTTTGATTTAAGATAGTTTGTGAAAATAAAAGGTTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 4-203, - strand, RNAz p=0.694925 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 4-203, - strand, RNAz p=0.694925 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 4-271, gnl|bosTau2|chr25 (33179474-33179207) | |
| 4-271, gnl|Hg17|chr7 (99338355-99338088) | |
| 4-271, gnl|Mm7|chr5 (137112874-137112607) | |
| 425-590, gnl|bosTau2|chr2 (37856742-37856907) | |
| 425-590, gnl|canFam2|chr19 (41655273-41655442) | |
| 425-590, gnl|danRer3|chr2 (44599870-44599705) | |
| 425-590, gnl|dasNov1|scaffold_220497 (262-93) | |
| 425-590, gnl|echTel1|scaffold_302751 (5500-5331) | |
| 425-590, gnl|fr1|chrUn (68101509-68101691) | |
| 425-590, gnl|galGal2|chr7 (31350421-31350590) | |
| 425-590, gnl|hg17|chr2 (136442701-136442870) | |
| 425-590, gnl|Hg17|chr2 (136442867-136442702) | |
| 425-590, gnl|loxAfr1|scaffold_3759 (42450-42281) | |
| 425-590, gnl|mm7|chr1 (128218247-128218416) | |
| 425-590, gnl|Mm7|chr1 (128218413-128218248) | |
| 425-590, gnl|monDom2|scaffold_2 (21457392-21457561) | |
| 425-590, gnl|oryCun1|scaffold_143250 (4151-3982) | |
| 425-590, gnl|panTro1|chr13 (25440853-25441022) | |
| 425-590, gnl|rheMac2|chr13 (116302479-116302310) | |
| 425-590, gnl|rn3|chr13 (41065067-41065236) | |
| 425-590, gnl|tetNig1|chr15 (2404829-2404660) | |
| 425-590, gnl|xenTro1|scaffold_31 (1406941-1406774) | |
| 724-886, gnl|bosTau2|chr2 (37865217-37865379) | |
| 724-886, gnl|canFam2|chr19 (41652397-41652562) | |
| 724-886, gnl|echTel1|scaffold_147360 (288-123) | |
| 724-886, gnl|galGal2|chr7 (31348741-31348917) | |
| 724-886, gnl|hg17|chr2 (136437531-136437695) | |
| 724-886, gnl|Hg17|chr2 (136437695-136437533) | |
| 724-886, gnl|loxAfr1|scaffold_3759 (50678-50513) | |
| 724-886, gnl|mm7|chr1 (128214888-128215053) | |
| 724-886, gnl|Mm7|chr1 (128215053-128214891) | |
| 724-886, gnl|monDom2|scaffold_2 (21455013-21455174) | |
| 724-886, gnl|oryCun1|scaffold_183084 (1334-1499) | |
| 724-886, gnl|panTro1|chr13 (25433371-25433537) | |
| 724-886, gnl|rheMac2|chr13 (116307641-116307477) | |
| 724-886, gnl|rn3|chr13 (41062411-41062575) | |
| 724-886, gnl|xenTro1|scaffold_26 (1938528-1938714) | |
| 1018-1580, gnl|bosTau2|chr2 (37869291-37869850) | |
| 1018-1580, gnl|Hg17|chr2 (136432256-136431684) | |
| 1018-1580, gnl|Mm7|chr1 (128212188-128211672) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-271, gnl|bosTau2|chr25 (33179474-33179207) | |
| 4-271, gnl|Hg17|chr7 (99338355-99338088) | |
| 4-271, gnl|Mm7|chr5 (137112874-137112607) | |
| 425-590, gnl|bosTau2|chr2 (37856742-37856907) | |
| 425-590, gnl|canFam2|chr19 (41655273-41655442) | |
| 425-590, gnl|danRer3|chr2 (44599870-44599705) | |
| 425-590, gnl|dasNov1|scaffold_220497 (262-93) | |
| 425-590, gnl|echTel1|scaffold_302751 (5500-5331) | |
| 425-590, gnl|fr1|chrUn (68101509-68101691) | |
| 425-590, gnl|galGal2|chr7 (31350421-31350590) | |
| 425-590, gnl|hg17|chr2 (136442701-136442870) | |
| 425-590, gnl|Hg17|chr2 (136442867-136442702) | |
| 425-590, gnl|loxAfr1|scaffold_3759 (42450-42281) | |
| 425-590, gnl|mm7|chr1 (128218247-128218416) | |
| 425-590, gnl|Mm7|chr1 (128218413-128218248) | |
| 425-590, gnl|monDom2|scaffold_2 (21457392-21457561) | |
| 425-590, gnl|oryCun1|scaffold_143250 (4151-3982) | |
| 425-590, gnl|panTro1|chr13 (25440853-25441022) | |
| 425-590, gnl|rheMac2|chr13 (116302479-116302310) | |
| 425-590, gnl|rn3|chr13 (41065067-41065236) | |
| 425-590, gnl|tetNig1|chr15 (2404829-2404660) | |
| 425-590, gnl|xenTro1|scaffold_31 (1406941-1406774) | |
| 724-886, gnl|bosTau2|chr2 (37865217-37865379) | |
| 724-886, gnl|canFam2|chr19 (41652397-41652562) | |
| 724-886, gnl|echTel1|scaffold_147360 (288-123) | |
| 724-886, gnl|galGal2|chr7 (31348741-31348917) | |
| 724-886, gnl|hg17|chr2 (136437531-136437695) | |
| 724-886, gnl|Hg17|chr2 (136437695-136437533) | |
| 724-886, gnl|loxAfr1|scaffold_3759 (50678-50513) | |
| 724-886, gnl|mm7|chr1 (128214888-128215053) | |
| 724-886, gnl|Mm7|chr1 (128215053-128214891) | |
| 724-886, gnl|monDom2|scaffold_2 (21455013-21455174) | |
| 724-886, gnl|oryCun1|scaffold_183084 (1334-1499) | |
| 724-886, gnl|panTro1|chr13 (25433371-25433537) | |
| 724-886, gnl|rheMac2|chr13 (116307641-116307477) | |
| 724-886, gnl|rn3|chr13 (41062411-41062575) | |
| 724-886, gnl|xenTro1|scaffold_26 (1938528-1938714) | |
| 1018-1580, gnl|bosTau2|chr2 (37869291-37869850) | |
| 1018-1580, gnl|Hg17|chr2 (136432256-136431684) | |
| 1018-1580, gnl|Mm7|chr1 (128212188-128211672) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| ova (0.387397) | |
| thg (0.380373) | |
| ill (0.351185) | |
| eye (0.341006) | |
| csk (0.281492) | |
| ese (0.253004) | |
| cbe (0.239234) | |
| nbm (0.198649) | |
| fty (0.17584) | |
| cli (0.152812) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.387397) | |
| thg (0.380373) | |
| ill (0.351185) | |
| eye (0.341006) | |
| csk (0.281492) | |
| ese (0.253004) | |
| cbe (0.239234) | |
| nbm (0.198649) | |
| fty (0.17584) | |
| cli (0.152812) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| eje (0.0988338) | |
| ldo (0.0970026) |