Ss1.1-Pig4-TMW8033M09.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TCTCTCTCTCTCTGTCTGTGTCTCCCTCTGTCTCTCTCTCTGTCTGTCTGTCTCTCTCTC TCCCTTCTTGCTTGGTAGTAACTAGGAAGAAGGAGGGGTGGGCACAGGAAAAAGGGAAAA GAGAAAACAGAAAAAGAATTGCATGCCACTATGTCTGAATATATCCTCTACTTGTAGATA ATTCCATCTAATTTGCACTTTTGTCTTTTTATTTCCGTTTTTGGACACCTCCTTTATCAT CCAGCCAACTGGGATAGACAAAGCACTGTTGGTGCCCTGAGCGACAGAACTCTGGTAGGG GGCTGGCTGTAAATTGACGTGGCATGGAAATTCTTCGCTAAGTTGTAGCAGCTTGCATGT TTCTCCTAAGAGCAAGCCCAGCCTCCCGGAGCTGTAGCTTAATCATCATGGGTTCAACGA CTTTACAGAAAAATGGATAGAAGTCTTCTGCTCCTTTCTTTGGACTCAAATGTTTTCTTT TTGAATATCTATGATTTAGCTGAAAAAATCAAAGCAGTTAAGTCTGTAACTTTCTTTTTG CAGCTTAAACAACAGAATTTGCTGCTCTCCCTCCCCTATCCTGCAATTTAATTCCTTACA GATTTTGCCATGGGGTGCGGACTTAGAAAGCTAGAAGACCCTGATGATAGCAGCCCTGGA AAAATATTTTCTACCCTGAAGAGACCGCAAGTGGAAACAAAGGCAGAATTTGCTTACGAA TATGTATTGCTGGATTTTACTTTACAAGCTTCACCACATCCAGCAGTCATCAAGATAAAT TCGATTCCGGATATAGTAACAAAAGTGGAAGACTACTATCTTAAAGGATATATTGTTGGG GCTATTCATCCTGTTATACAACCTATGGGGCAGCAAAAACACCTACCTGCAAGTTACCTG TACAGGGTGGTGCTATCACGCTTGAAATTAAGCACGAAGCATTCAACAGCTCCCAGTGGA CAAAGACGCCCAAGGCTTGTGATTGAGGAATGTCCTTTAACTTATGAGACACAAACAAAT GACTCAGCAAAAGAACTGATAGAAAAGATTAATATAGCCGCTAAAAAAGGAATGAAATTT GTTGGATTCATATCACAGCATTGTCCACCCCTTAAATTCTGCAATGGAACCAACCATGAT GGAGATATAGAATCAGCACTTCATGTGAGACACAGTTCAGAGGAAAACTGCAAAAGCTGG AATGAAGGCACATTCAGTGGGCAGTCATCTGAAAGTGGAATTGAAGAAGAACTGCATCAT GAAAGTGGACAGTGTCAAATGGAACTAGACGGCAGCCCCAGTTTCTCTAAATCAAGAAAG GAAGAAGATAACAAGTTGTATACAGTCTTCAATGTTTTTGATGATGAATCTACCTGCTGG ACCTATCAGGAAGGCATCCTGTCAATGAAAGTAACAAGAAAAGGCTCGGTTGTTAGTACA CTTGATGCCGATGGGCTGGAGTTAACTACATTTTATTATAAACAAGGCTTATCTTTAATT GATTCTTTTGTATGCTGGGAAACATCTAAAGGGGACCCTTCGCCAAAATCTTTGGAAGGA TTCTTTATCTATGAAGAAGAAGGTTCTGGAGTTCCAGGATCCAGCAGGAAAGGAAATGAT GCCATCGTAGTAGAACAATGGACTGTTATTGAGGGCTGTGAAATCAAAACGGATTACGGG CCTCTGCTGCACACACTGGCTGAGTTTGGATGGCTTCTGACAAGCGTGTTGCCTACACCT ATACTGAGACATGACAGTGAAGGAAATTTGGCTACAAAGCAAGTTGTGTTTCTTCAGAGA CCAGTTATGTGGAATTCAGCTGCTCAAACACCAGAAAGGCGAGGCAGCCGGCACGTGAAA GGGGAAGACAGGAGCAAAGTCACCAGCAGGAGCATCGGACTGGACACGGCGCTGTCACAC TCTGCAGAGAGCAGAAGCCCGGCCGAGGGGCGCCTTCTCTCTCCCTCTAGAGAATGCTGG ATGAAGGAGAAGAGGCCTGCCCAGCCCAGCGGCTTCTCCGGGCTCAGCAGCAGTGACAGT GTCCTGCGGGAGCTAGACGATGGACAGTTTGACCAGGAAGATGGAGTAACTCAGGTCACT TGTATGTGAGCAAAGAAGGAAAGCCACAGAGGCCTTGTAAATAATAATGAGTAAAATAAT TGCCAAGTGACTTCATTGTATCACTTTACCTGTATTTACATAATACTTTGAATTTTTCCA GACTCAGGCTGTCCTCTAATCTATGTAAACTTTGGCTCAACCTCCCAGGCACGGAAGAAT AACCAACATATTTGTACATTTAGAATCCTGTTTAGAGTTCTCTCAACTAAAACATCTGTT TAAACAGATGTCTCATTAGGTTATTAACCCATAATGTACTTCAGTTTCTCATGAATGTTC AAGGTATAATTTTCTTACAGTTCCTGGTAAGACGACTAAATTTCTCAACCAGTATCTTTA CCTAATTAGACAATTCTCAGGAAATTAGAGTCTTAAAACTGAAATTCTCTCTCTCTCACT TACACACACATATAAAGGGCTAATTAATAAAATACCTATTTCCTGAAAATAGCAGTCTAA ATTTTGTCTTTAACTGTGTTATGTATATACAAAGCAAACCTATTTGTTAAAATAGTCTTT GAAAAAGAATCTGTTTTGAATGTCTTTGGTTTTAAAGAGTCACCGTGCTACCCACCCTGT ACTAATTCATTGAGCTTCAACTTTGATGCTTCTAATAGCCTAACAAAGAGCGAAGCAGCA TCCCCTAAAATTCAATGTGAAAAGAACCCACAAGCTCAATATTTAAAAACCTTAATAGAA TTAATTTTCTTTTAAAAAATGTAAATAGTCTAAAAACTATGTAAAGTTCCATCAACTTTA AATGGAAACTGAAGTCTTTTATATCTCTCTAGATTTGAGTTATGCTTTTATTTTGATTGC TAATCATGAAGAATGTGGAAACCCAGAATTTTCACTCCTGAAAGAATAAAAAATGCTTCT AGCACATGCAATGTGTACAGTGACCATCTCTGCTTTTCTTGCTCTGTTACTAGGAATACA TTTGCCTTTCCCAGCCTTTAACAGAGATTTAAAGGCTCACTTTGAAATGTGAGAAATTTT AGATGAATTACAACTGACTGTGCCATTGATGAATTCAGCCCATTATATATTTTTATTAGC ATTGGCATTATAAGACCATTTGAATAATAAAATATCATTTACTATTGG |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TCTCTCTCTCTCTGTCTGTGTCTCCCTCTGTCTCTCTCTCTGTCTGTCTGTCTCTCTCTC TCCCTTCTTGCTTGGTAGTAACTAGGAAGAAGGAGGGGTGGGCACAGGAAAAAGGGAAAA GAGAAAACAGAAAAAGAATTGCATGCCACTATGTCTGAATATATCCTCTACTTGTAGATA ATTCCATCTAATTTGCACTTTTGTCTTTTTATTTCCGTTTTTGGACACCTCCTTTATCAT CCAGCCAACTGGGATAGACAAAGCACTGTTGGTGCCCTGAGCGACAGAACTCTGGTAGGG GGCTGGCTGTAAATTGACGTGGCATGGAAATTCTTCGCTAAGTTGTAGCAGCTTGCATGT TTCTCCTAAGAGCAAGCCCAGCCTCCCGGAGCTGTAGCTTAATCATCATGGGTTCAACGA CTTTACAGAAAAATGGATAGAAGTCTTCTGCTCCTTTCTTTGGACTCAAATGTTTTCTTT TTGAATATCTATGATTTAGCTGAAAAAATCAAAGCAGTTAAGTCTGTAACTTTCTTTTTG CAGCTTAAACAACAGAATTTGCTGCTCTCCCTCCCCTATCCTGCAATTTAATTCCTTACA GATTTTGCCATGGGGTGCGGACTTAGAAAGCTAGAAGACCCTGATGATAGCAGCCCTGGA AAAATATTTTCTACCCTGAAGAGACCGCAAGTGGAAACAAAGGCAGAATTTGCTTACGAA TATGTATTGCTGGATTTTACTTTACAAGCTTCACCACATCCAGCAGTCATCAAGATAAAT TCGATTCCGGATATAGTAACAAAAGTGGAAGACTACTATCTTAAAGGATATATTGTTGGG GCTATTCATCCTGTTATACAACCTATGGGGCAGCAAAAACACCTACCTGCAAGTTACCTG TACAGGGTGGTGCTATCACGCTTGAAATTAAGCACGAAGCATTCAACAGCTCCCAGTGGA CAAAGACGCCCAAGGCTTGTGATTGAGGAATGTCCTTTAACTTATGAGACACAAACAAAT GACTCAGCAAAAGAACTGATAGAAAAGATTAATATAGCCGCTAAAAAAGGAATGAAATTT GTTGGATTCATATCACAGCATTGTCCACCCCTTAAATTCTGCAATGGAACCAACCATGAT GGAGATATAGAATCAGCACTTCATGTGAGACACAGTTCAGAGGAAAACTGCAAAAGCTGG AATGAAGGCACATTCAGTGGGCAGTCATCTGAAAGTGGAATTGAAGAAGAACTGCATCAT GAAAGTGGACAGTGTCAAATGGAACTAGACGGCAGCCCCAGTTTCTCTAAATCAAGAAAG GAAGAAGATAACAAGTTGTATACAGTCTTCAATGTTTTTGATGATGAATCTACCTGCTGG ACCTATCAGGAAGGCATCCTGTCAATGAAAGTAACAAGAAAAGGCTCGGTTGTTAGTACA CTTGATGCCGATGGGCTGGAGTTAACTACATTTTATTATAAACAAGGCTTATCTTTAATT GATTCTTTTGTATGCTGGGAAACATCTAAAGGGGACCCTTCGCCAAAATCTTTGGAAGGA TTCTTTATCTATGAAGAAGAAGGTTCTGGAGTTCCAGGATCCAGCAGGAAAGGAAATGAT GCCATCGTAGTAGAACAATGGACTGTTATTGAGGGCTGTGAAATCAAAACGGATTACGGG CCTCTGCTGCACACACTGGCTGAGTTTGGATGGCTTCTGACAAGCGTGTTGCCTACACCT ATACTGAGACATGACAGTGAAGGAAATTTGGCTACAAAGCAAGTTGTGTTTCTTCAGAGA CCAGTTATGTGGAATTCAGCTGCTCAAACACCAGAAAGGCGAGGCAGCCGGCACGTGAAA GGGGAAGACAGGAGCAAAGTCACCAGCAGGAGCATCGGACTGGACACGGCGCTGTCACAC TCTGCAGAGAGCAGAAGCCCGGCCGAGGGGCGCCTTCTCTCTCCCTCTAGAGAATGCTGG ATGAAGGAGAAGAGGCCTGCCCAGCCCAGCGGCTTCTCCGGGCTCAGCAGCAGTGACAGT GTCCTGCGGGAGCTAGACGATGGACAGTTTGACCAGGAAGATGGAGTAACTCAGGTCACT TGTATGTGAGCAAAGAAGGAAAGCCACAGAGGCCTTGTAAATAATAATGAGTAAAATAAT TGCCAAGTGACTTCATTGTATCACTTTACCTGTATTTACATAATACTTTGAATTTTTCCA GACTCAGGCTGTCCTCTAATCTATGTAAACTTTGGCTCAACCTCCCAGGCACGGAAGAAT AACCAACATATTTGTACATTTAGAATCCTGTTTAGAGTTCTCTCAACTAAAACATCTGTT TAAACAGATGTCTCATTAGGTTATTAACCCATAATGTACTTCAGTTTCTCATGAATGTTC AAGGTATAATTTTCTTACAGTTCCTGGTAAGACGACTAAATTTCTCAACCAGTATCTTTA CCTAATTAGACAATTCTCAGGAAATTAGAGTCTTAAAACTGAAATTCTCTCTCTCTCACT TACACACACATATAAAGGGCTAATTAATAAAATACCTATTTCCTGAAAATAGCAGTCTAA ATTTTGTCTTTAACTGTGTTATGTATATACAAAGCAAACCTATTTGTTAAAATAGTCTTT GAAAAAGAATCTGTTTTGAATGTCTTTGGTTTTAAAGAGTCACCGTGCTACCCACCCTGT ACTAATTCATTGAGCTTCAACTTTGATGCTTCTAATAGCCTAACAAAGAGCGAAGCAGCA TCCCCTAAAATTCAATGTGAAAAGAACCCACAAGCTCAATATTTAAAAACCTTAATAGAA TTAATTTTCTTTTAAAAAATGTAAATAGTCTAAAAACTATGTAAAGTTCCATCAACTTTA AATGGAAACTGAAGTCTTTTATATCTCTCTAGATTTGAGTTATGCTTTTATTTTGATTGC TAATCATGAAGAATGTGGAAACCCAGAATTTTCACTCCTGAAAGAATAAAAAATGCTTCT AGCACATGCAATGTGTACAGTGACCATCTCTGCTTTTCTTGCTCTGTTACTAGGAATACA TTTGCCTTTCCCAGCCTTTAACAGAGATTTAAAGGCTCACTTTGAAATGTGAGAAATTTT AGATGAATTACAACTGACTGTGCCATTGATGAATTCAGCCCATTATATATTTTTATTAGC ATTGGCATTATAAGACCATTTGAATAATAAAATATCATTTACTATTGG |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
152-2392, + strand, RNAz p=0.792138 | |
501-610, - strand, RNAz p=0.620547 | |
1161-1301, - strand, RNAz p=0.97458 |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
152-2392, + strand, RNAz p=0.792138 | |
501-610, - strand, RNAz p=0.620547 | |
1161-1301, - strand, RNAz p=0.97458 |
Homologous human UTR: 1 entry(ies) | More info |
Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
3' of NM_144629, + |
Aligned organism(s): 50 entry(ies) | More info |
Aligned organism(s): 50 entry(ies) | Help | Less info |
47-748, gnl|bosTau2|chr2 (52121434-52120727) | |
47-748, gnl|Hg17|chr2 (198366390-198365550) | |
47-748, gnl|Mm7|chr1 (55474116-55473431) | |
1046-1334, gnl|bosTau2|chr2 (52100731-52100443) | |
1046-1334, gnl|canFam2|chr37 (10114992-10115204) | |
1046-1334, gnl|dasNov1|scaffold_50984 (7424-7190) | |
1046-1334, gnl|echTel1|scaffold_299707 (756-993) | |
1046-1334, gnl|galGal2|chr7 (11202986-11202739) | |
1046-1334, gnl|hg17|chr2 (198323916-198324144) | |
1046-1334, gnl|Hg17|chr2 (198324229-198323944) | |
1046-1334, gnl|mm7|chr1 (55453614-55453842) | |
1046-1334, gnl|Mm7|chr1 (55453927-55453639) | |
1046-1334, gnl|monDom2|scaffold_2 (107392121-107392372) | |
1046-1334, gnl|oryCun1|scaffold_172536 (23772-23547) | |
1046-1334, gnl|panTro1|chr13 (88283462-88283690) | |
1046-1334, gnl|rheMac2|chr12 (61240742-61240970) | |
1046-1334, gnl|rn3|chr9 (54121240-54121457) | |
1530-1654, gnl|bosTau2|chr2 (52088201-52088077) | |
1530-1654, gnl|canFam2|chr37 (10101086-10101253) | |
1530-1654, gnl|dasNov1|scaffold_47496 (12189-12019) | |
1530-1654, gnl|echTel1|scaffold_321487 (47756-47920) | |
1530-1654, gnl|fr1|chrUn (190949108-190948969) | |
1530-1654, gnl|galGal2|chr7 (11207755-11207580) | |
1530-1654, gnl|hg17|chr2 (198307998-198308166) | |
1530-1654, gnl|Hg17|chr2 (198308153-198308029) | |
1530-1654, gnl|loxAfr1|scaffold_46700 (13413-13248) | |
1530-1654, gnl|mm7|chr1 (55442803-55442961) | |
1530-1654, gnl|Mm7|chr1 (55442949-55442825) | |
1530-1654, gnl|monDom2|scaffold_2 (107377684-107377835) | |
1530-1654, gnl|oryCun1|scaffold_172536 (34077-33923) | |
1530-1654, gnl|panTro1|chr13 (88269678-88269846) | |
1530-1654, gnl|rheMac2|chr12 (61223612-61223780) | |
1530-1654, gnl|rn3|chr9 (54110130-54110287) | |
1837-3084, gnl|bosTau2|chr19 (28824928-28823666) | |
1837-3084, gnl|Hg17|chr2 (198262510-198261215) | |
1837-3084, gnl|Mm7|chr1 (55419392-55417661) | |
3099-3228, gnl|bosTau2|chr19 (28823614-28823483) | |
3099-3228, gnl|canFam2|chr37 (10074499-10074765) | |
3099-3228, gnl|dasNov1|scaffold_48327 (7837-8093) | |
3099-3228, gnl|echTel1|scaffold_321487 (2884-3155) | |
3099-3228, gnl|hg17|chr2 (198261002-198261272) | |
3099-3228, gnl|Hg17|chr2 (198261162-198261029) | |
3099-3228, gnl|loxAfr1|scaffold_17832 (35688-35961) | |
3099-3228, gnl|mm7|chr1 (55417465-55417713) | |
3099-3228, gnl|Mm7|chr1 (55417611-55417492) | |
3099-3228, gnl|monDom2|scaffold_2 (107340653-107340998) | |
3099-3228, gnl|oryCun1|scaffold_109583 (1023-745) | |
3099-3228, gnl|panTro1|chr13 (88224301-88224573) | |
3099-3228, gnl|rheMac2|chr12 (61183576-61183846) | |
3099-3228, gnl|rn3|chr9 (54084525-54084777) |
Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
47-748, gnl|bosTau2|chr2 (52121434-52120727) | |
47-748, gnl|Hg17|chr2 (198366390-198365550) | |
47-748, gnl|Mm7|chr1 (55474116-55473431) | |
1046-1334, gnl|bosTau2|chr2 (52100731-52100443) | |
1046-1334, gnl|canFam2|chr37 (10114992-10115204) | |
1046-1334, gnl|dasNov1|scaffold_50984 (7424-7190) | |
1046-1334, gnl|echTel1|scaffold_299707 (756-993) | |
1046-1334, gnl|galGal2|chr7 (11202986-11202739) | |
1046-1334, gnl|hg17|chr2 (198323916-198324144) | |
1046-1334, gnl|Hg17|chr2 (198324229-198323944) | |
1046-1334, gnl|mm7|chr1 (55453614-55453842) | |
1046-1334, gnl|Mm7|chr1 (55453927-55453639) | |
1046-1334, gnl|monDom2|scaffold_2 (107392121-107392372) | |
1046-1334, gnl|oryCun1|scaffold_172536 (23772-23547) | |
1046-1334, gnl|panTro1|chr13 (88283462-88283690) | |
1046-1334, gnl|rheMac2|chr12 (61240742-61240970) | |
1046-1334, gnl|rn3|chr9 (54121240-54121457) | |
1530-1654, gnl|bosTau2|chr2 (52088201-52088077) | |
1530-1654, gnl|canFam2|chr37 (10101086-10101253) | |
1530-1654, gnl|dasNov1|scaffold_47496 (12189-12019) | |
1530-1654, gnl|echTel1|scaffold_321487 (47756-47920) | |
1530-1654, gnl|fr1|chrUn (190949108-190948969) | |
1530-1654, gnl|galGal2|chr7 (11207755-11207580) | |
1530-1654, gnl|hg17|chr2 (198307998-198308166) | |
1530-1654, gnl|Hg17|chr2 (198308153-198308029) | |
1530-1654, gnl|loxAfr1|scaffold_46700 (13413-13248) | |
1530-1654, gnl|mm7|chr1 (55442803-55442961) | |
1530-1654, gnl|Mm7|chr1 (55442949-55442825) | |
1530-1654, gnl|monDom2|scaffold_2 (107377684-107377835) | |
1530-1654, gnl|oryCun1|scaffold_172536 (34077-33923) | |
1530-1654, gnl|panTro1|chr13 (88269678-88269846) | |
1530-1654, gnl|rheMac2|chr12 (61223612-61223780) | |
1530-1654, gnl|rn3|chr9 (54110130-54110287) | |
1837-3084, gnl|bosTau2|chr19 (28824928-28823666) | |
1837-3084, gnl|Hg17|chr2 (198262510-198261215) | |
1837-3084, gnl|Mm7|chr1 (55419392-55417661) | |
3099-3228, gnl|bosTau2|chr19 (28823614-28823483) | |
3099-3228, gnl|canFam2|chr37 (10074499-10074765) | |
3099-3228, gnl|dasNov1|scaffold_48327 (7837-8093) | |
3099-3228, gnl|echTel1|scaffold_321487 (2884-3155) | |
3099-3228, gnl|hg17|chr2 (198261002-198261272) | |
3099-3228, gnl|Hg17|chr2 (198261162-198261029) | |
3099-3228, gnl|loxAfr1|scaffold_17832 (35688-35961) | |
3099-3228, gnl|mm7|chr1 (55417465-55417713) | |
3099-3228, gnl|Mm7|chr1 (55417611-55417492) | |
3099-3228, gnl|monDom2|scaffold_2 (107340653-107340998) | |
3099-3228, gnl|oryCun1|scaffold_109583 (1023-745) | |
3099-3228, gnl|panTro1|chr13 (88224301-88224573) | |
3099-3228, gnl|rheMac2|chr12 (61183576-61183846) | |
3099-3228, gnl|rn3|chr9 (54084525-54084777) |
Expressed library(ies): 21 entry(ies) | More info |
Expressed library(ies): 21 entry(ies) | Help | Less info |
spl (0.572738) | |
mcp (0.511945) | |
fco (0.471624) | |
fat (0.442282) | |
amn (0.417711) | |
elu (0.385356) | |
tra (0.369276) | |
vin (0.332557) | |
mga (0.32041) | |
sme (0.305437) | |
ova (0.258264) | |
eru (0.240096) | |
ski (0.146735) | |
liv (0.146284) | |
nca (0.136874) | |
che (0.136314) | |
ste (0.135208) | |
ret (0.128733) | |
eep (0.122564) | |
ebs (0.118301) | |
jca (0.11396) |
Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
spl (0.572738) | |
mcp (0.511945) | |
fco (0.471624) | |
fat (0.442282) | |
amn (0.417711) | |
elu (0.385356) | |
tra (0.369276) | |
vin (0.332557) | |
mga (0.32041) | |
sme (0.305437) | |
ova (0.258264) | |
eru (0.240096) | |
ski (0.146735) | |
liv (0.146284) | |
nca (0.136874) | |
che (0.136314) | |
ste (0.135208) | |
ret (0.128733) | |
eep (0.122564) | |
ebs (0.118301) | |
jca (0.11396) |