Non-Coding RNA Search

Ss1.1-Pig4-TMW8033M11.3

Sequence:


               
               AAAAGAAAAAAAATCCAGTTTGCTTGCCACGAATTGTTCAGCGTTAGGTTTACAAAGCTC
GTTGTTGAATGTTGAACATTTGTCCAAAGGAGTTTGACAAAACAGAAGCTGCTTGGTCCC
TGTTCTGCCTGCTAGGTCATAAGGATTAAGGCCACGTGGCTGGGGTACTTGTGTCAAGTC
CAGAAGAGGGCAGAGTCCCTCTCCTACCTCTGTGAGGACGCAATTGAAGGTCAAGTTGTA
GGGCAGGTACCTCTCATGCTGCAAAGAAGTTTAGAGGAGTCTTTCAGTTGGGGAGGTGAC
AGGTAATAGGACAGGGTTTCTCACGATGGCAAAGATACTAGGGAGAGGAGAGCTGCTGGG
CCCCGGGGACTGTGGTGAGACAGAAGCCAGCTCCCCTCCTCCGTCTCCACACCTGCCTCG
CTTCCCTGAGTCATCCGTATTCCAGCACCCTGTCAGATCCCTCAATGGACTGATTCCCAC
TCCCCGCCCCCCCTTGTGTTAACTATACCAATATTATTTTTTTAGCAATTGAAATGCACT
TTTTTTATTTCAACTCAATCATGATTTTAAGTATAAAAAAAATTTATAGACTGTTAAAAC
TACTTTTTTGTGTATTTTTAACCACTTGATGTAGCATTGTCTATTTTATTCTTATGAGAC
TCTGGTACAAGGTGTGCCACTTCATGATATTTCCGAGATGCTGGGCCTTTGGATGTGTAC
GGTAACCAACTTAATGCTAATGTTCACAGTAAAAAAAGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGAAAAAAAATCCAGTTTGCTTGCCACGAATTGTTCAGCGTTAGGTTTACAAAGCTC
GTTGTTGAATGTTGAACATTTGTCCAAAGGAGTTTGACAAAACAGAAGCTGCTTGGTCCC
TGTTCTGCCTGCTAGGTCATAAGGATTAAGGCCACGTGGCTGGGGTACTTGTGTCAAGTC
CAGAAGAGGGCAGAGTCCCTCTCCTACCTCTGTGAGGACGCAATTGAAGGTCAAGTTGTA
GGGCAGGTACCTCTCATGCTGCAAAGAAGTTTAGAGGAGTCTTTCAGTTGGGGAGGTGAC
AGGTAATAGGACAGGGTTTCTCACGATGGCAAAGATACTAGGGAGAGGAGAGCTGCTGGG
CCCCGGGGACTGTGGTGAGACAGAAGCCAGCTCCCCTCCTCCGTCTCCACACCTGCCTCG
CTTCCCTGAGTCATCCGTATTCCAGCACCCTGTCAGATCCCTCAATGGACTGATTCCCAC
TCCCCGCCCCCCCTTGTGTTAACTATACCAATATTATTTTTTTAGCAATTGAAATGCACT
TTTTTTATTTCAACTCAATCATGATTTTAAGTATAAAAAAAATTTATAGACTGTTAAAAC
TACTTTTTTGTGTATTTTTAACCACTTGATGTAGCATTGTCTATTTTATTCTTATGAGAC
TCTGGTACAAGGTGTGCCACTTCATGATATTTCCGAGATGCTGGGCCTTTGGATGTGTAC
GGTAACCAACTTAATGCTAATGTTCACAGTAAAAAAAGAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               87-206, + strand, RNAz p=0.66323

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-206, + strand, RNAz p=0.66323

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-763, gnl|bosTau2|chr19 (30081921-30082673)
               

               
               8-763, gnl|Hg17|chr17 (44722336-44721576)
               

               
               8-763, gnl|Mm7|chr11 (95880685-95881383)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-763, gnl|bosTau2|chr19 (30081921-30082673)
               

               
               8-763, gnl|Hg17|chr17 (44722336-44721576)
               

               
               8-763, gnl|Mm7|chr11 (95880685-95881383)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cte (0.29274)
               

               
               sug (0.254582)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               sug (0.254582)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	8-763, gnl\|bosTau2\|chr19 (30081921-30082673)
	8-763, gnl\|Hg17\|chr17 (44722336-44721576)
	8-763, gnl\|Mm7\|chr11 (95880685-95881383)

	cte (0.29274)
	sug (0.254582)
	nep (0.183925)
	sin (0.174948)
	duo (0.172801)
	pty (0.142714)
	nca (0.136874)
	ssp (0.13552)
	spc (0.113366)
	jej (0.0989218)