Non-Coding RNA Search

Ss1.1-Pig4-TMW8033M12.3

Sequence:


               
               TGGACTTCCTCATCACCCACCCCCAGGAGGGCCTGGAGGCAGGGCTGCTGCCCAGCGTGA
TATGCTGTCTGGAGAAGCAGGGCCTCGTCCTGTACCACCAGCACCAGCGCGGCCAACAGG
GAGACCCCACCCACCTGGCCCAGAAGCCCCACGCCATGGATGCCTTTGAGATGAGTCTCT
GCATTTTCCGCCTGCCACGCCCCCCAGAGGCTGCCGTAGGGGGGCCCCGGGAGCCCTGCC
CCCCCTGGAAGGCTGTGCGAGTGGACCTGGTGGTCACCCCCATCAGCCAGTTCCCCTTCG
CCCTGCTCGGCTGGACTGGCTCCAAGCATTTCGAGCGGGAGCTGCGCCGCTTCAGCCGGA
AGGAGAGGGGGCTCTGGCTGAACAGCCATGGTCTGTTTGACTCGGAGCAGAAAATGCCTT
TCCACGTGGCTTCAGAGGAGGACATCTTCGGACTCCTGGGCCTGGAGTACCTTCCCCCAG
AGCAGAGAAATGCCTGATCCTATCAGGTGGCCCCCACTTCCATTCTTTGGAAATGGGGGA
GGCATTTGAGCCAGATCCCATGGGTGTCTTTGGCCCCCGAATGTTTCCGGGCAGAAGATG
CACCGCTGCCTCAAGTTCTCCCACGTGGGAGCCTCGTCTGTGTGGACCACCCCTCCTCCC
CCCACACCGTGTTCAAGATGAAATGAAATGAGCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACTTCCTCATCACCCACCCCCAGGAGGGCCTGGAGGCAGGGCTGCTGCCCAGCGTGA
TATGCTGTCTGGAGAAGCAGGGCCTCGTCCTGTACCACCAGCACCAGCGCGGCCAACAGG
GAGACCCCACCCACCTGGCCCAGAAGCCCCACGCCATGGATGCCTTTGAGATGAGTCTCT
GCATTTTCCGCCTGCCACGCCCCCCAGAGGCTGCCGTAGGGGGGCCCCGGGAGCCCTGCC
CCCCCTGGAAGGCTGTGCGAGTGGACCTGGTGGTCACCCCCATCAGCCAGTTCCCCTTCG
CCCTGCTCGGCTGGACTGGCTCCAAGCATTTCGAGCGGGAGCTGCGCCGCTTCAGCCGGA
AGGAGAGGGGGCTCTGGCTGAACAGCCATGGTCTGTTTGACTCGGAGCAGAAAATGCCTT
TCCACGTGGCTTCAGAGGAGGACATCTTCGGACTCCTGGGCCTGGAGTACCTTCCCCCAG
AGCAGAGAAATGCCTGATCCTATCAGGTGGCCCCCACTTCCATTCTTTGGAAATGGGGGA
GGCATTTGAGCCAGATCCCATGGGTGTCTTTGGCCCCCGAATGTTTCCGGGCAGAAGATG
CACCGCTGCCTCAAGTTCTCCCACGTGGGAGCCTCGTCTGTGTGGACCACCCCTCCTCCC
CCCACACCGTGTTCAAGATGAAATGAAATGAGCATA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               78-326, gnl|bosTau2|chr4 (39034090-39033851)
               

               
               78-326, gnl|Hg17|chr7 (43886867-43886622)
               

               
               78-326, gnl|Mm7|chr11 (5781731-5781480)
               


               
               407-695, gnl|bosTau2|chr4 (39033461-39033174)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-326, gnl|bosTau2|chr4 (39034090-39033851)
               

               
               78-326, gnl|Hg17|chr7 (43886867-43886622)
               

               
               78-326, gnl|Mm7|chr11 (5781731-5781480)
               


               
               407-695, gnl|bosTau2|chr4 (39033461-39033174)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               lnt (0.142308)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               lnt (0.142308)
               

               
               cty (0.10408)

	78-326, gnl\|bosTau2\|chr4 (39034090-39033851)
	78-326, gnl\|Hg17\|chr7 (43886867-43886622)
	78-326, gnl\|Mm7\|chr11 (5781731-5781480)

	407-695, gnl\|bosTau2\|chr4 (39033461-39033174)