Non-Coding RNA Search

Ss1.1-Pig4-TMW8033M14.3

Sequence:


               
               GTGGAAGCGGGATGAGTGAGCGAGTCGCCCGAGTCAGGGAACCCGTCCTTCTTGCTGGCT
CCTCCTGTAGTAATGACCCTTCGGGTTTGTATGCCGTTGCCTTGTGTGTTCTCTCTTGCT
CCTCCTGAAAGTCTTAAGGGGTGGACTTTCTTTCCCCTCTTTCTGTTTCCCCTCTTCTGT
CACTGGGACACGAAGGGTTTTGAAGAGATGGAGTGAGGGATTAGAACCCAAGTCTTAGTC
TCTGAAGTCCAAGCTGGAAGTAGCTTTATCCCTTGGGTGTTTAACCTGTTGTTTAATAAT
TAAACTGTCTTCAGATGGAGCTGGAAGAGGGGAAGGCAGGCAGTGGACTCCGCCAGTATT
ATCTGTCCAAGATTGAAGAACTCCAGGTAAGAGGTCCTGAGGGAGCTGGAAGGGCTTCGG
TGAAGGATCGATGGAGCCGATTTCTAGAAAGCCGTATGATTCCACTGGGGCGCAGTGGAA
GAAGCAAGAAGCCAAGGGTATGAATTATATCAAGTTAACAGTTTCTTCCTCAAGTCCCAC
CCTTTTGAAGATCATTAATATTCACAGTTTGTTACATATTTTCAGGAGTCAAATTTTCAC
ATAAAAGTTAGCCCCGGCCAAAAATCATTCCTTTCAGAGGAAGCCTGAATGGTAGTTTCT
TATAAAAGGGAAGATGTAGGTTCAGAAGATGGGATTTATTAGAGAGGGGTTGGGGCAGAG
TGAGAGTGAGGGAAGACAAAATTGAGGAGTCTGAACAATGCTGGTTCCAGGGGGCCAAAT
GAAAAGGAACTAGCAACCCAGTATTACAGCCTAAAGAGGGAGCCAGAATCATAGAAATGA
GGAAAATATTGCAAATTAGATGGAGAGCCACAAGGAAAAATTCTCACTTCCAGGTACATT
TGCAGGTTTCATATTTGGGTGGTCATTTTTGAAATGCTTTACCTGTGCTGCTTTCATTTG
TTCCTCAAATTAACCCCGAAAAGAGGCCAGTAGGTGCACCACTTGCAGTTTGGTGAGAGA
TCTAGACCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGAAGCGGGATGAGTGAGCGAGTCGCCCGAGTCAGGGAACCCGTCCTTCTTGCTGGCT
CCTCCTGTAGTAATGACCCTTCGGGTTTGTATGCCGTTGCCTTGTGTGTTCTCTCTTGCT
CCTCCTGAAAGTCTTAAGGGGTGGACTTTCTTTCCCCTCTTTCTGTTTCCCCTCTTCTGT
CACTGGGACACGAAGGGTTTTGAAGAGATGGAGTGAGGGATTAGAACCCAAGTCTTAGTC
TCTGAAGTCCAAGCTGGAAGTAGCTTTATCCCTTGGGTGTTTAACCTGTTGTTTAATAAT
TAAACTGTCTTCAGATGGAGCTGGAAGAGGGGAAGGCAGGCAGTGGACTCCGCCAGTATT
ATCTGTCCAAGATTGAAGAACTCCAGGTAAGAGGTCCTGAGGGAGCTGGAAGGGCTTCGG
TGAAGGATCGATGGAGCCGATTTCTAGAAAGCCGTATGATTCCACTGGGGCGCAGTGGAA
GAAGCAAGAAGCCAAGGGTATGAATTATATCAAGTTAACAGTTTCTTCCTCAAGTCCCAC
CCTTTTGAAGATCATTAATATTCACAGTTTGTTACATATTTTCAGGAGTCAAATTTTCAC
ATAAAAGTTAGCCCCGGCCAAAAATCATTCCTTTCAGAGGAAGCCTGAATGGTAGTTTCT
TATAAAAGGGAAGATGTAGGTTCAGAAGATGGGATTTATTAGAGAGGGGTTGGGGCAGAG
TGAGAGTGAGGGAAGACAAAATTGAGGAGTCTGAACAATGCTGGTTCCAGGGGGCCAAAT
GAAAAGGAACTAGCAACCCAGTATTACAGCCTAAAGAGGGAGCCAGAATCATAGAAATGA
GGAAAATATTGCAAATTAGATGGAGAGCCACAAGGAAAAATTCTCACTTCCAGGTACATT
TGCAGGTTTCATATTTGGGTGGTCATTTTTGAAATGCTTTACCTGTGCTGCTTTCATTTG
TTCCTCAAATTAACCCCGAAAAGAGGCCAGTAGGTGCACCACTTGCAGTTTGGTGAGAGA
TCTAGACCTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2564005|dbj|BAA22934.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2564005|dbj|BAA22934.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               387-514, - strand, RNAz p=0.997771

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               387-514, - strand, RNAz p=0.997771

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-884, gnl|bosTau2|chr19 (40501833-40502707)
               

               
               6-884, gnl|Hg17|chr17 (59258837-59259793)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-884, gnl|bosTau2|chr19 (40501833-40502707)
               

               
               6-884, gnl|Hg17|chr17 (59258837-59259793)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	6-884, gnl\|bosTau2\|chr19 (40501833-40502707)
	6-884, gnl\|Hg17\|chr17 (59258837-59259793)