Non-Coding RNA Search

Ss1.1-Pig4-TMW8033N04.3

Sequence:


               
               AGTCACCAGGGACACCTGGAGCCCAGCTTCACGGCTTCCCTGTCTGCAGCCCTGAGGTGC
CCTCCCAGCTGCCGCAGGAGGAGGGGCTGTGGGACCTGGACCTCCAGGACGAGCAGGAGG
ACCAGATCGCCGGAGACACCTGCCTGCCAGGCGAGAAGCCCTACGAGTGCGGCCAGTGCG
GCCGCGCCTTCAGCCACAGCTCGCACTTCACGCAGCACGTGCGGGTCCACAACGGCGAGA
AGCCCTACGCGTGCGGTGAGTGCGGCCAGGCCTTCAGCCAGAGCTCCAACCTGCTGCGCC
ACCAGCGGCTGCACACGGGCGAGAAGCCCTACGCCTGCAGCCAGTGCGGCAAGGCCTTCA
TCTGGAGCTCCGTGCTCATCGAGCACCAGCGCATCCACACGGGCGAGAAGCCCTACGAGT
GCCCCGACTGCGGCAAGGCCTTCCGCGGCCGCTCGCACTTCTTCCGGCACCTGCGGACCC
ACACGGGCGAGAAGCCCTTTGCCTGCGGCGCCTGCGGCAAGGCCTTCGGCCAGAGTTCCC
AGCTCATCCAGCACCAGAGGGTCCACTCCCGGGAGTAGTGTGCGCGTGAGGCCTGGAGGA
GCCGCGGGGGGCCGGGGACAGCGGCCTGGTGCGGAGGGGACTTTGGGGAGGGCTCCGGCC
TCTGCGCGCCACCCATTTGGCACAACCGGCACCGTGCGCTGTGTCCCGAATAAATTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCACCAGGGACACCTGGAGCCCAGCTTCACGGCTTCCCTGTCTGCAGCCCTGAGGTGC
CCTCCCAGCTGCCGCAGGAGGAGGGGCTGTGGGACCTGGACCTCCAGGACGAGCAGGAGG
ACCAGATCGCCGGAGACACCTGCCTGCCAGGCGAGAAGCCCTACGAGTGCGGCCAGTGCG
GCCGCGCCTTCAGCCACAGCTCGCACTTCACGCAGCACGTGCGGGTCCACAACGGCGAGA
AGCCCTACGCGTGCGGTGAGTGCGGCCAGGCCTTCAGCCAGAGCTCCAACCTGCTGCGCC
ACCAGCGGCTGCACACGGGCGAGAAGCCCTACGCCTGCAGCCAGTGCGGCAAGGCCTTCA
TCTGGAGCTCCGTGCTCATCGAGCACCAGCGCATCCACACGGGCGAGAAGCCCTACGAGT
GCCCCGACTGCGGCAAGGCCTTCCGCGGCCGCTCGCACTTCTTCCGGCACCTGCGGACCC
ACACGGGCGAGAAGCCCTTTGCCTGCGGCGCCTGCGGCAAGGCCTTCGGCCAGAGTTCCC
AGCTCATCCAGCACCAGAGGGTCCACTCCCGGGAGTAGTGTGCGCGTGAGGCCTGGAGGA
GCCGCGGGGGGCCGGGGACAGCGGCCTGGTGCGGAGGGGACTTTGGGGAGGGCTCCGGCC
TCTGCGCGCCACCCATTTGGCACAACCGGCACCGTGCGCTGTGTCCCGAATAAATTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|87507|pir||F31201

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|87507|pir||F31201

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               427-546, + strand, RNAz p=0.998166

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-546, + strand, RNAz p=0.998166

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               147-588, gnl|bosTau2|chr13 (24163153-24163592)
               

               
               147-588, gnl|Hg17|chr20 (18244877-18245316)
               


               
               148-575, gnl|bosTau2|chr10 (8996683-8996256)
               

               
               148-575, gnl|Hg17|chr19 (42818488-42817977)
               

               
               148-575, gnl|Mm7|chr2 (127310114-127309687)
               


               
               150-558, gnl|bosTau2|chr10 (8996513-8996105)
               

               
               150-558, gnl|Hg17|chr19 (42818318-42817826)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-588, gnl|bosTau2|chr13 (24163153-24163592)
               

               
               147-588, gnl|Hg17|chr20 (18244877-18245316)
               


               
               148-575, gnl|bosTau2|chr10 (8996683-8996256)
               

               
               148-575, gnl|Hg17|chr19 (42818488-42817977)
               

               
               148-575, gnl|Mm7|chr2 (127310114-127309687)
               


               
               150-558, gnl|bosTau2|chr10 (8996513-8996105)
               

               
               150-558, gnl|Hg17|chr19 (42818318-42817826)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ute (0.132784)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ute (0.132784)

	147-588, gnl\|bosTau2\|chr13 (24163153-24163592)
	147-588, gnl\|Hg17\|chr20 (18244877-18245316)

	148-575, gnl\|bosTau2\|chr10 (8996683-8996256)
	148-575, gnl\|Hg17\|chr19 (42818488-42817977)
	148-575, gnl\|Mm7\|chr2 (127310114-127309687)

	150-558, gnl\|bosTau2\|chr10 (8996513-8996105)
	150-558, gnl\|Hg17\|chr19 (42818318-42817826)